Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0024030 | OGI:11080140 | 5/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:29857833-29859551 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtatccggaggactacacgatcaagaaggatgatttggtgaagcaatgggtagctgaagggtttattGgtgaagtaaatgagcaagacaggttcaaggttgctgaaggatattttcatgaacttacaaggagaggattgatccaagaagttgataccaattataataatgatgagttgccatgtacagttcatcacatcgtgatggactttattaggtacaaatccgaggaggagagtttcatcagtattgccgactatcttcaaacaacaccaggcaatcctgacaggattcgtcgattgtccgtccagtttggaggttcaaaaggtgcaaagataccaggaagcgtcagaatgagccaacttcggtcacttgcatattttggattcttcaattgtgtaccttccattgcagagtatatcctcctgcgagttctgattcttcatgtttgggctgataaagacaagacaaaTtttgacctctccagcattcaagaactatttcgactgagatatctgaagattgcatgtaatgttagcgtcaagcttccaacaaagattcgatggttacaatacttggagactctggatattgatgcaagagtagtaaattttccctcagatatcgttcatttgaagcatttgttgcacctccgccttccacgtgagattaatatgccccgcgagatcgataagatgacatcgctttgcagtttagcgtattttcagctctcaagagacagtgtgttgaaccttggcaagctggccaatttacaggatctccatctaatctgttataaagtaaaatctgatcgtttggttgttatcatgaaaagtcttggatctatcatggagaaattcagcaaactcaaaactctagttctagatgctggtgcttcaacaatgggcattctctgtgatggtttgagcaatgtgccctctccgccacatcatcttcagaagcttaagttctcgccacaaatttgcatctttcccagcctcccggagtggattgggaaacttaatgaactggcgattctaaagattgcagttaaggacttatcgaggaataatattgagattcttaaaagattgactggtcttactattctctcgctctctgtccagactgcccctgcagaacgagctgtttttgacgagggattccaagcactcaggtacttcaagtttgcatgtactgcagcatgtttgtcctttgtgcaaggagcaatggttaatgttgaaaggctaaagttatgcttcaatgccgataccattgaacaatacgatcttacatcggttggcttccagtatttgacttcacttcaagagatctcggtaaaatttggagaccccagttcttccagaataaggaatgcaaagactgccctggatgctgcggttagcaagaatccaaacaccactatcgtcaacgtacagacgacagaaGgaatatcttttggtgacaaagaaaagaatgtatcaccacaaataacaaataatcttcagtccccaggaagacagggtataatcacacggaaagattcagtcgaactagtagttcgagaaaaggaagaaagtactacagcagaaaagaaagaccagataaaaaaggaattggaactgatcgaaggaaaagacactgatacacaaggagatcaagaaaatatttcaagtgaagaagatacatacaatcaagacaacagcaggtgcgtatag
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| CDS seq | atgtatccggaggactacacgatcaagaaggatgatttggtgaagcaatgggtagctgaagggtttattGgtgaagtaaatgagcaagacaggttcaaggttgctgaaggatattttcatgaacttacaaggagaggattgatccaagaagttgataccaattataataatgatgagttgccatgtacagttcatcacatcgtgatggactttattaggtacaaatccgaggaggagagtttcatcagtattgccgactatcttcaaacaacaccaggcaatcctgacaggattcgtcgattgtccgtccagtttggaggttcaaaaggtgcaaagataccaggaagcgtcagaatgagccaacttcggtcacttgcatattttggattcttcaattgtgtaccttccattgcagagtatatcctcctgcgagttctgattcttcatgtttgggctgataaagacaagacaaaTtttgacctctccagcattcaagaactatttcgactgagatatctgaagattgcatgtaatgttagcgtcaagcttccaacaaagattcgatggttacaatacttggagactctggatattgatgcaagagtagtaaattttccctcagatatcgttcatttgaagcatttgttgcacctccgccttccacgtgagattaatatgccccgcgagatcgataagatgacatcgctttgcagtttagcgtattttcagctctcaagagacagtgtgttgaaccttggcaagctggccaatttacaggatctccatctaatctgttataaagtaaaatctgatcgtttggttgttatcatgaaaagtcttggatctatcatggagaaattcagcaaactcaaaactctagttctagatgctggtgcttcaacaatgggcattctctgtgatggtttgagcaatgtgccctctccgccacatcatcttcagaagcttaagttctcgccacaaatttgcatctttcccagcctcccggagtggattgggaaacttaatgaactggcgattctaaagattgcagttaaggacttatcgaggaataatattgagattcttaaaagattgactggtcttactattctctcgctctctgtccagactgcccctgcagaacgagctgtttttgacgagggattccaagcactcaggtacttcaagtttgcatgtactgcagcatgtttgtcctttgtgcaaggagcaatggttaatgttgaaaggctaaagttatgcttcaatgccgataccattgaacaatacgatcttacatcggttggcttccagtatttgacttcacttcaagagatctcggtaaaatttggagaccccagttcttccagaataaggaatgcaaagactgccctggatgctgcggttagcaagaatccaaacaccactatcgtcaacgtacagacgacagaaGgaatatcttttggtgacaaagaaaagaatgtatcaccacaaataacaaataatcttcagtccccaggaagacagggtataatcacacggaaagattcagtcgaactagtagttcgagaaaaggaagaaagtactacagcagaaaagaaagaccagataaaaaaggaattggaactgatcgaaggaaaagacactgatacacaaggagatcaagaaaatatttcaagtgaagaagatacatacaatcaagacaacagcaggtgcgtatag
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| Protein seq | MYPEDYTIKKDDLVKQWVAEGFIGEVNEQDRFKVAEGYFHELTRRGLIQEVDTNYNNDELPCTVHHIVMDFIRYKSEEESFISIADYLQTTPGNPDRIRRLSVQFGGSKGAKIPGSVRMSQLRSLAYFGFFNCVPSIAEYILLRVLILHVWADKDKTNFDLSSIQELFRLRYLKIACNVSVKLPTKIRWLQYLETLDIDARVVNFPSDIVHLKHLLHLRLPREINMPREIDKMTSLCSLAYFQLSRDSVLNLGKLANLQDLHLICYKVKSDRLVVIMKSLGSIMEKFSKLKTLVLDAGASTMGILCDGLSNVPSPPHHLQKLKFSPQICIFPSLPEWIGKLNELAILKIAVKDLSRNNIEILKRLTGLTILSLSVQTAPAERAVFDEGFQALRYFKFACTAACLSFVQGAMVNVERLKLCFNADTIEQYDLTSVGFQYLTSLQEISVKFGDPSSSRIRNAKTALDAAVSKNPNTTIVNVQTTEGISFGDKEKNVSPQITNNLQSPGRQGIITRKDSVELVVREKEESTTAEKKDQIKKELELIEGKDTDTQGDQENISSEEDTYNQDNSRCV |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0024030 | OsNaBo_11g0024030.01 | Chr11 | 29857833 | 29859551 | + | NAM | ||
| CDS seq | atgtatccggaggactacacgatcaagaaggatgatttggtgaagcaatgggtagctgaagggtttattGgtgaagtaaatgagcaagacaggttcaaggttgctgaaggatattttcatgaacttacaaggagaggattgatccaagaagttgataccaattataataatgatgagttgccatgtacagttcatcacatcgtgatggactttattaggtacaaatccgaggaggagagtttcatcagtattgccgactatcttcaaacaacaccaggcaatcctgacaggattcgtcgattgtccgtccagtttggaggttcaaaaggtgcaaagataccaggaagcgtcagaatgagccaacttcggtcacttgcatattttggattcttcaattgtgtaccttccattgcagagtatatcctcctgcgagttctgattcttcatgtttgggctgataaagacaagacaaaTtttgacctctccagcattcaagaactatttcgactgagatatctgaagattgcatgtaatgttagcgtcaagcttccaacaaagattcgatggttacaatacttggagactctggatattgatgcaagagtagtaaattttccctcagatatcgttcatttgaagcatttgttgcacctccgccttccacgtgagattaatatgccccgcgagatcgataagatgacatcgctttgcagtttagcgtattttcagctctcaagagacagtgtgttgaaccttggcaagctggccaatttacaggatctccatctaatctgttataaagtaaaatctgatcgtttggttgttatcatgaaaagtcttggatctatcatggagaaattcagcaaactcaaaactctagttctagatgctggtgcttcaacaatgggcattctctgtgatggtttgagcaatgtgccctctccgccacatcatcttcagaagcttaagttctcgccacaaatttgcatctttcccagcctcccggagtggattgggaaacttaatgaactggcgattctaaagattgcagttaaggacttatcgaggaataatattgagattcttaaaagattgactggtcttactattctctcgctctctgtccagactgcccctgcagaacgagctgtttttgacgagggattccaagcactcaggtacttcaagtttgcatgtactgcagcatgtttgtcctttgtgcaaggagcaatggttaatgttgaaaggctaaagttatgcttcaatgccgataccattgaacaatacgatcttacatcggttggcttccagtatttgacttcacttcaagagatctcggtaaaatttggagaccccagttcttccagaataaggaatgcaaagactgccctggatgctgcggttagcaagaatccaaacaccactatcgtcaacgtacagacgacagaaGgaatatcttttggtgacaaagaaaagaatgtatcaccacaaataacaaataatcttcagtccccaggaagacagggtataatcacacggaaagattcagtcgaactagtagttcgagaaaaggaagaaagtactacagcagaaaagaaagaccagataaaaaaggaattggaactgatcgaaggaaaagacactgatacacaaggagatcaagaaaatatttcaagtgaagaagatacatacaatcaagacaacagcaggtgcgtatag
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| Protein seq | MYPEDYTIKKDDLVKQWVAEGFIGEVNEQDRFKVAEGYFHELTRRGLIQEVDTNYNNDELPCTVHHIVMDFIRYKSEEESFISIADYLQTTPGNPDRIRRLSVQFGGSKGAKIPGSVRMSQLRSLAYFGFFNCVPSIAEYILLRVLILHVWADKDKTNFDLSSIQELFRLRYLKIACNVSVKLPTKIRWLQYLETLDIDARVVNFPSDIVHLKHLLHLRLPREINMPREIDKMTSLCSLAYFQLSRDSVLNLGKLANLQDLHLICYKVKSDRLVVIMKSLGSIMEKFSKLKTLVLDAGASTMGILCDGLSNVPSPPHHLQKLKFSPQICIFPSLPEWIGKLNELAILKIAVKDLSRNNIEILKRLTGLTILSLSVQTAPAERAVFDEGFQALRYFKFACTAACLSFVQGAMVNVERLKLCFNADTIEQYDLTSVGFQYLTSLQEISVKFGDPSSSRIRNAKTALDAAVSKNPNTTIVNVQTTEGISFGDKEKNVSPQITNNLQSPGRQGIITRKDSVELVVREKEESTTAEKKDQIKKELELIEGKDTDTQGDQENISSEEDTYNQDNSRCV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.299628 | 0.684916 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0686400 | SBH | 0.830266 | 0.567043 | 0.670688 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45750 | SBH | 2.154246 | 1.370123 | 0.517376 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0686400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024380 | SBH | 0.099646 | 2.008879 | 0.759783 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023050 | SBH | 0.350881 | 2.159900 | 2.415120 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018900 | SBH | 0.086071 | 21.888433 | 9.582742 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023600 | SBH | 0.021435 | 0.193460 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024060 | SBH | 5.791612 | 0.0 | 11.852215 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0427200 | RBH | 6.6683825 | 128.104786 | 0.2345625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024450 | SBH | 0.156799 | 0.040792 | 0.934761 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0421400 | SBH | 1.5230995 | 6.917459 | 5.3415235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024000 | RBH | 0.841491 | 0.217777 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024000 | RBH | 1.287633 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023740 | SBH | 2.832259 | 19.498186 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022610 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018740 | SBH | 0.150249 | 1.709918 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022860 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016860 | SBH | 0.134073 | 6.797035 | 0.0 |
