Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0023840 | OGI:11078710 | 9/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:29618134-29619314 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagagaaacTtaaggtcatcctcttgctgctccaggacaattgttgccagtactcgtcggtatgccgctgatcttgcattcctgacaaggacacagatgtctttgcgcttcagattttcatgtgtccattgctgCcgcctcaacaccgcgagaagctttgcttcgcagaaggcaattgcaacagcatctCGcccactactgtaatatgtaaaacagattgcagttaaggtttattactcagaattgcgctggcatgtagcgagggggactggggataggcaagattaccttccatggacaaaacccgtcgtgacaaagcctatcggccatctgaacgcctttcgtgtagaatcatcgtttggcagctgaagattgctggtgctaggatccagccaagagaaataagaagttacatgggattgagggagctggagTtcccatttttctaggcgttcttcttcgtcctcttctgatctgttagatgcataaacagggatgagcttcgtcaattgatattCccagcactcatctcatacagaagaatacaGTgggatacagaaaaaaaagatctgaacaaatagcagaatctagcaaatgaatatatttaaaacttaaaagccagaatccacttaagAaattagatgataatcaatcggacagcaccattgatccaatgttgtaaagtcacttgcaagtgaaccaaaaaatttacagctaaatgaataatataccctcgtcatgaggTgctgaagaaataaattgtgagtactgacctggttttccggttccaggctgaaagatctgatgggagtggggcacaaacaacagcaccctcttcaaaagaaccttccttaaatgctctgatcagcacccttacaagacataatctgtttacagagcatcctgttttcacattatcaccagaaactagactggacttatcagtaactgcttccatgacagatgaacccaaatacttctcatgaaattctttcacatgatgtctcaacatatggatggttcttggcacgagtagttggaaggatgtaggagcatctatttgcgatgattctgcatcaccagagttggaaTttactgggagactttcagataatgctgtagcgacgctctttaagtcatctacttcAagagtgctcacaatgccatctcctttacgaaa
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| CDS seq | atgttgagacatcatgtgaaagaatttcatgagaagtatttgggttcatctgtcatggaagcagttactgataagtccagtctagtttctggtgataatgtgaaaacaggatgctctgtaaacagattatgtcttgtaagggtgctgatcagagcatttaaggaaggttcttttgaagagggtgctgttgtttgtgccccactcccatcagatctttcagcctggaaccggaaaaccagatcagaagaggacgaagaagaacgcctagaaaaatgggaActccagctccctcaatcccatgtaacttcttatttctcttggctggatcctagcaccagcaatcttcagctgccaaacgatgattctacacgaaaggcgttcagatggccgataggctttgtcacgacgggttttgtccatggaagtagtgggCGagatgctgttgcaattgccttctgcgaagcaaagcttctcgcggtgttgaggcgGcagcaatggacacatgaaaatctgaagcgcaaagacatctgtgtccttgtcaggaatgcaagatcagcggcataccgacgagtactggcaacaattgtcctggagcagcaagaggatgaccttaAgtttctctag
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| Protein seq | MLRHHVKEFHEKYLGSSVMEAVTDKSSLVSGDNVKTGCSVNRLCLVRVLIRAFKEGSFEEGAVVCAPLPSDLSAWNRKTRSEEDEEERLEKWELQLPQSHVTSYFSWLDPSTSNLQLPNDDSTRKAFRWPIGFVTTGFVHGSSGRDAVAIAFCEAKLLAVLRRQQWTHENLKRKDICVLVRNARSAAYRRVLATIVLEQQEDDLKFL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0023840 | OsNaBo_11g0023840.01 | Chr11 | 29618134 | 29619314 | - | NAM | ||
| CDS seq | atgttgagacatcatgtgaaagaatttcatgagaagtatttgggttcatctgtcatggaagcagttactgataagtccagtctagtttctggtgataatgtgaaaacaggatgctctgtaaacagattatgtcttgtaagggtgctgatcagagcatttaaggaaggttcttttgaagagggtgctgttgtttgtgccccactcccatcagatctttcagcctggaaccggaaaaccagatcagaagaggacgaagaagaacgcctagaaaaatgggaActccagctccctcaatcccatgtaacttcttatttctcttggctggatcctagcaccagcaatcttcagctgccaaacgatgattctacacgaaaggcgttcagatggccgataggctttgtcacgacgggttttgtccatggaagtagtgggCGagatgctgttgcaattgccttctgcgaagcaaagcttctcgcggtgttgaggcgGcagcaatggacacatgaaaatctgaagcgcaaagacatctgtgtccttgtcaggaatgcaagatcagcggcataccgacgagtactggcaacaattgtcctggagcagcaagaggatgaccttaAgtttctctag
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| Protein seq | MLRHHVKEFHEKYLGSSVMEAVTDKSSLVSGDNVKTGCSVNRLCLVRVLIRAFKEGSFEEGAVVCAPLPSDLSAWNRKTRSEEDEEERLEKWELQLPQSHVTSYFSWLDPSTSNLQLPNDDSTRKAFRWPIGFVTTGFVHGSSGRDAVAIAFCEAKLLAVLRRQQWTHENLKRKDICVLVRNARSAAYRRVLATIVLEQQEDDLKFL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0677425 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45250 | SBH | 0.352758 | 0.413491 | 0.353312 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0677425 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023890 | SBH | 0.0 | 0.0 | 2.412395 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023580 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023220 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023180 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023810 | SBH | 0.000000 | 0.000000 | 4.628242 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0423500 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024110 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0432200 | RBH | 4.471516 | 17.1407165 | 21.8625135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023870 | SBH | 0.059386 | 0.025588 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023870 | SBH | 0.130461 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023430 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023120 | SBH | 0.0 | 0.0 | 2.104256 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023400 | SBH | 0.0 | 0.0 | 4.501593 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023850 | RBH | 1.021474 | 1.032073 | 0.421065 |
