Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0023870 | OGI:11079580 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:29574119-29579024 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtgacaactgatttatgaagggataaaaaaggattcacattttactggggagttggaagtttgccaccctgttgcttctcactcctcgaacatgaatcagacagctgtaaaagattctgaACaaaaaattacaacattgataaataagcagcttaaggtttacagactagagaaacttaaggtcatcctcttgctgctccaggacaattgttgcgagtgctcgtcggtatgccgctgatcttgcattccttacaaggacacagatgtctttgcgcttcagactttcatgtgtcctccattgctgccgcctcaacaccgcgagaagctttgcttcgcagaaggcaactgcaacagcatcttgcccactactgtaatatgtaaagcggattgttcagttaaggttttttactcagtattgcatcgttggcatatagtgagggagactgggtgaggcaagattaccttccatggacaaaacccgtcgtgatgaagcctatcggccatctgaatgcctttcgtgtagaatcgccgtttggcagctggagattgctggtgctaggatccagccaagagaaataagaacttacatgggattgagggagctggagttcccatttttctagacattcttcttcctcctcttctgatctgttagatgcgtgaacagggatgagcttcttgaattgatatttcccagcactcatctcatacagaagaatgcagtgggatacaaaactaaaatgattcaagccagaatcaacttaagaaatcagatgacaatcaatcggacagcaacattgatccaatgttgtaaagtatcacttcagttgcatgtgaactaaaaaatttacagctacatgaataatataccctcatcatgaggtgctgaagaaataaattgtgagtactgacctggtcttccggttccaggctgaaagatctgatgggagtggggcacaaacaacagcaccctcttcaaaagaaccttccttaaatgctctaatcagcacccttacaagacataatctgtttatagagcatcccgttttcacattatcaccagaaactagactggacttgccagtaactgcttccatgtcagatgaattcaaatacttctcatcaatttttttcacatactgtctcaacacttggatggttcttggcacaagtagttggaaggatgtaggagcacttgttggtgatgattctgcatcaccagagttggaatttaccgggatactttcagataatactgtagcgacgctctttaagtcatcttcaagattgctcagtatgccatctcctttacgaaaactagcaatgacacaatgccataaaggtggtacaggaacccttggaggtctcatggaagaagggcggcagttggtagctttatcgagaacagcagcctcttcagccataaataatgaataggctttgctgtctggataatcataagggaagcatggcatcttgagctgcaaatagagggatcagtgtattgctatagaacaaacttctcacaattaacaataaaacataaatcaaagctgcacaatcctcagcttccccaaggctgtaatcttactgttactttaactatatcaactatttcatactattgaatgaatacagatagcaatgttaaacatactactgcaccaggaggccaatcaccaatagtaataacataataaatttgcaaggatctaagattacatcattagcttgttttctggcgcattctatctttttatcaataacaatacctttgaggctatccaccgtctctctcttaagccaatagcatgtgcaccatgagatacaagataaaaccagaaaggttttacccaactcaaaggtagaataacagaccacctgtgaagtcaacaaaaatgaaacaagatagctgcacatcaggatgatgacataacgatagcatgtagagaatcctagcttttaggaatattatcgcacaaacctctcaaacaaatcattgccagtaaaaaattattcacaaatgcaccagaaagaaaacagatcattgttagccaatgttcaacaaaaaatcaagcaaaattagtgataacagatattgaataaactttttataagaagccaaagctaaaataacttaaaccaatatgagcatgatacactgaggtaggtctagttctcatgttaagacttatgatggttgcacttctattatgggaccatataagagctaacataaaagagcaggacagcaaatgtaacatgattgagaaaatgggccttaccctacagagatcagactgccttttgcatgtttcagaagaataacaggacaggatcgaccaatggaatccttctcttgacttgtttgtccttgatcatttccagaatcaaggcagaaaaacttcatacgtctgtggtgtttctccatacaaagaattttctcatccacaggaggatttatcttaaggctggaatcccacaattctctacagtctgaaagggccaaatcgtgatttcctgggttcagccatatcgatgacaaaatattcccaatccctgatggtgtctcatcagcatttggaacttggtattcctccatgagttggttattctggtccagggaaactgttttagaagaatctgttccctcgactgaattatctctggggtcatggactatcatggatagtatagcaccacactgaagaatgtcagcattatcaaaaacagatcttttcaaaagatgagagccagtagagcaatacagaggatcagttgatgtagtcacattatttttgttaactagcttggtggatatacttggactgcattcattgaaaaaacataaattagcacagctcgacatcatctttttctccagccaggagtgaCcactataattttctcagggaaagatgaacttacttgctaactggcttcaatatactcttaagagattgcatagcattgcttcccatgacttctaatcttgccattttcccctccagtgagcaacaactgattgtgtcaccagattcttgcatctgcaatgtaagaatgacattactgcacatagacgaacaaatgaagcaatatttctaaacaaatgtttatctcaaagctcaaaagatggaagctacatgtagcagaaaaaaaatacaaagaggactaacctgttgatgacaagcggctcttaatgtttcaagcccttcactgagagcagaagggtggatccatatccataattggcgccgtaaagaatttctttcatcagatataatttgagaattggacaaatctacatcttcagtctccaattcaccaccctcccttaaaaatggacgccacatgtatgtcaccggcccaacaatttcgaggtgaggacacccaacacggcaaagctggaaaatacaattaagtcacatttgtcattccaaacaatcctctacctatgctttctgtggtaaatgtataaCtaccatagcattctcatagcaaacacctcgcataacttgaccatgcagatgcttcaagccaggagttttatcttgaggagatggatgcagaaccattctgacaatggataacagggagtcctacgtcagttagccagcaacataattagtttctttaagtataaaagaaataggagataagcaaggctaaaaaggaacatagagaaacttgtacctctggaccatctagctcaactggagtgaagtagctagcatcatgaacaactgttccatttttgagccacttcagaacagttcttgaaccccttcctctgcatgatagaatgtgaactgcattactcatttgaatttacatatatgataaaccttagcatgaaggtcatgaagatagcgtaagataaactacatgtaagacatcaacctctacattttgtacaagaatttattgcactctcctcaaggtgatgaaactgattaagaatttattgcacttacaagacgaatgttggtatgaagaacactagcttaatgctttcataatttgattgcccttcaaatcggtttaacttgctctgctagaattctagaactgcctaaacagtggtgcccatgttggactatgaacaaccagaacgagcatataactcttgcctttaatcctttctcactagagatgagctagtggaatacaaactcaccaaaaaaattacaaaatgggaagcaagtggaatgatgggaatttcttctagtataaatgagccccgccaatgcaatgattacaacccagtgagctcatttcaagcttgtagtacactcagatcaaatacaatctaacacagaaattcagtaaagttaatttaacacagaaaattcagtaacgctgtactatttcccctctccgtatgaaagtcaggtcagattatcatctactatcaaggatcttgtaatcataaactgaggattcgaggcgtacctcccatgggcaccgatgggcaagacgaatccccaccgcctctccatggagaacctcttggcgtgccacaggtgcgtgcgcagccgccgcgcgccgtcgccggcggcggagaacccctccgcggggttgcccgcgagctcccgccgccgcctcaccctcctcgagggccttcCCTcctcctcctccgtaccgtcggccgcctcggcatcccggcctaggcggcggcggcgcttgttggaggggaggtggcccgtggtgcggcggcgcgcggagcGgggctgcgtcaagcggccggcgaggcgggcggatacggattcgtggagggaacggagctcgccggctcgagccgccgcgaagcgccgcacgtcgagctgccgcggcggcgggggaacgccggccatcggagaggaattttctttttcttttttttttttttttggctagcgggagagag
More
|
||||||||||
| CDS seq | atggccggcgttcccccgccgccgcggcagctcgacgtgcggcgcttcgcggcggctcgagccggcgagctccgttccctccacgaatccgtatccgcccgcctcgccggccgcttgacgcagcccCgctccgcgcgccgccgcaccacgggccacctcccctccaacaagcgccgccgccgcctaggccgggatgccgaggcggccgacggtacggaggaggaggAGGgaaggccctcgaggagggtgaggcggcggcgggagctcgcgggcaaccccgcggaggggttctccgccgccggcgacggcgcgcggcggctgcgcacgcacctgtggcacgccaagaggttctccatggagaggcggtggggattcgtcttgcccatcggtgcccatgggagaggaaggggttcaagaactgttctgaagtggctcaaaaatggaacagttgttcatgatgctagctacttcactccagttgagctagatggtccagaggactccctgttatccattgtcagaatggttctgcatccatctcctcaagataaaactcctggcttgaagcatctgcatggtcaagttatgcgaggtgtttgctatgagaatgctatgctttgccgtgttgggtgtcctcacctcgaaattgttgggccggtgacatacatgtggcgtccatttttaagggagggtggtgaattggagactgaagatgtagatttgtccaattctcaaattatatctgatgaaagaaattctttacggcgccaattatggatatggatccacccttctgctctcagtgaagggcttgaaacattaagagccgcttgtcatcaacagatgcaagaatctggtgacacaatcagttgttgctcactggaggggaaaatggcaagattagaagtcatgggaagcaatgctatgcaatctcttaagagtatattgaagccagttagcaatccaagtatatccaccaagctagttaacaaaaataatgtgactacatcaactgatcctctgtattgctctactggctctcatcttttgaaaagatctgtttttgataatgctgacattcttcagtgtggtgctatactatccatgatagtccatgaccccagagataattcagtcgagggaacagattcttctaaaacagtttccctggaccagaataaccaactcatggaggaataccaagttccaaatgctgatgagacaccatcagggattgggaatattttgtcatcgatatggctgaacccaggaaatcacgatttggccctttcagactgtagagaattgtgggattccagccttaagataaatcctcctgtggatgagaaaattctttgtatggagaaacaccacagacgtatgaagtttttctgccttgattctggaaatgatcaaggacaaacaagtcaagagaaggattccattggtcgatcctgtcctgttattcttctgaaacatgcaaaaggcagtctgatctctgtagggtggtctgttattctacctttgagttgggtaaaacctttctggttttatcttgtatctcatggtgcacatgctattggcttaagagagagacggtggatagcctcaaagctcaagatgccatgcttcccttatgattatccagacagcaaagcctattcattatttatggctgaagaggctgctgttctcgataaagctaccaactgccgcccttcttccatgagacctccaagggttcctgtaccacctttatggcattgtgtcattgctagttttcgtaaaggagatggcatactgagcaatcttgaagatgacttaaagagcgtcgctacagtattatctgaaagtatcccggtaaattccaactctggtgatgcagaatcatcaccaacaagtgctcctacatccttccaactacttgtgccaagaaccatccaagtgttgagacagtatgtgaaaaaaattgatgagaagtatttgaattcatctgacatggaagcagttactggcaagtccagtctagtttctggtgataatgtgaaaacgggatgctctataaacagattatgtcttgtaagggtgctgattagagcatttaaggaaggttcttttgaagagggtgctgttgtttgtgccccactcccatcagatctttcagcctggaaccggaagaccagatcagaagaggaggaagaagaatgtctagaaaaatgggaactccagctccctcaatcccatgtaagttcttatttctcttggctggatcctagcaccagcaatctccagctgccaaacggcgattctacacgaaaggcattcagatggccgataggcttcatcacgacgggttttgtccatggaagtagtgggcaagatgctgttgcagttgccttctgcgaagcaaagcttctcgcggtgttgaggcggcagcaatggaggacacatgaaagtctgaagcgcaaagacatctgtgtccttgtaaggaatgcaagatcagcggcataccgacgagcactcgcaacaattgtcctggagcagcaagaggatgaccttaagtttctctag
More
|
||||||||||
| Protein seq | MAGVPPPPRQLDVRRFAAARAGELRSLHESVSARLAGRLTQPRSARRRTTGHLPSNKRRRRLGRDAEAADGTEEEEGRPSRRVRRRRELAGNPAEGFSAAGDGARRLRTHLWHAKRFSMERRWGFVLPIGAHGRGRGSRTVLKWLKNGTVVHDASYFTPVELDGPEDSLLSIVRMVLHPSPQDKTPGLKHLHGQVMRGVCYENAMLCRVGCPHLEIVGPVTYMWRPFLREGGELETEDVDLSNSQIISDERNSLRRQLWIWIHPSALSEGLETLRAACHQQMQESGDTISCCSLEGKMARLEVMGSNAMQSLKSILKPVSNPSISTKLVNKNNVTTSTDPLYCSTGSHLLKRSVFDNADILQCGAILSMIVHDPRDNSVEGTDSSKTVSLDQNNQLMEEYQVPNADETPSGIGNILSSIWLNPGNHDLALSDCRELWDSSLKINPPVDEKILCMEKHHRRMKFFCLDSGNDQGQTSQEKDSIGRSCPVILLKHAKGSLISVGWSVILPLSWVKPFWFYLVSHGAHAIGLRERRWIASKLKMPCFPYDYPDSKAYSLFMAEEAAVLDKATNCRPSSMRPPRVPVPPLWHCVIASFRKGDGILSNLEDDLKSVATVLSESIPVNSNSGDAESSPTSAPTSFQLLVPRTIQVLRQYVKKIDEKYLNSSDMEAVTGKSSLVSGDNVKTGCSINRLCLVRVLIRAFKEGSFEEGAVVCAPLPSDLSAWNRKTRSEEEEEECLEKWELQLPQSHVSSYFSWLDPSTSNLQLPNGDSTRKAFRWPIGFITTGFVHGSSGQDAVAVAFCEAKLLAVLRRQQWRTHESLKRKDICVLVRNARSAAYRRALATIVLEQQEDDLKFL |
||||||||||
| Function | Ribonucleases P/MRP protein subunit POP1 [UniProtKB/Swiss-Prot:Q99575] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0023870 | OsLima_11g0023870.01 | Chr11 | 29574119 | 29579024 | - | NAM | ||
| CDS seq | atggccggcgttcccccgccgccgcggcagctcgacgtgcggcgcttcgcggcggctcgagccggcgagctccgttccctccacgaatccgtatccgcccgcctcgccggccgcttgacgcagcccCgctccgcgcgccgccgcaccacgggccacctcccctccaacaagcgccgccgccgcctaggccgggatgccgaggcggccgacggtacggaggaggaggAGGgaaggccctcgaggagggtgaggcggcggcgggagctcgcgggcaaccccgcggaggggttctccgccgccggcgacggcgcgcggcggctgcgcacgcacctgtggcacgccaagaggttctccatggagaggcggtggggattcgtcttgcccatcggtgcccatgggagaggaaggggttcaagaactgttctgaagtggctcaaaaatggaacagttgttcatgatgctagctacttcactccagttgagctagatggtccagaggactccctgttatccattgtcagaatggttctgcatccatctcctcaagataaaactcctggcttgaagcatctgcatggtcaagttatgcgaggtgtttgctatgagaatgctatgctttgccgtgttgggtgtcctcacctcgaaattgttgggccggtgacatacatgtggcgtccatttttaagggagggtggtgaattggagactgaagatgtagatttgtccaattctcaaattatatctgatgaaagaaattctttacggcgccaattatggatatggatccacccttctgctctcagtgaagggcttgaaacattaagagccgcttgtcatcaacagatgcaagaatctggtgacacaatcagttgttgctcactggaggggaaaatggcaagattagaagtcatgggaagcaatgctatgcaatctcttaagagtatattgaagccagttagcaatccaagtatatccaccaagctagttaacaaaaataatgtgactacatcaactgatcctctgtattgctctactggctctcatcttttgaaaagatctgtttttgataatgctgacattcttcagtgtggtgctatactatccatgatagtccatgaccccagagataattcagtcgagggaacagattcttctaaaacagtttccctggaccagaataaccaactcatggaggaataccaagttccaaatgctgatgagacaccatcagggattgggaatattttgtcatcgatatggctgaacccaggaaatcacgatttggccctttcagactgtagagaattgtgggattccagccttaagataaatcctcctgtggatgagaaaattctttgtatggagaaacaccacagacgtatgaagtttttctgccttgattctggaaatgatcaaggacaaacaagtcaagagaaggattccattggtcgatcctgtcctgttattcttctgaaacatgcaaaaggcagtctgatctctgtagggtggtctgttattctacctttgagttgggtaaaacctttctggttttatcttgtatctcatggtgcacatgctattggcttaagagagagacggtggatagcctcaaagctcaagatgccatgcttcccttatgattatccagacagcaaagcctattcattatttatggctgaagaggctgctgttctcgataaagctaccaactgccgcccttcttccatgagacctccaagggttcctgtaccacctttatggcattgtgtcattgctagttttcgtaaaggagatggcatactgagcaatcttgaagatgacttaaagagcgtcgctacagtattatctgaaagtatcccggtaaattccaactctggtgatgcagaatcatcaccaacaagtgctcctacatccttccaactacttgtgccaagaaccatccaagtgttgagacagtatgtgaaaaaaattgatgagaagtatttgaattcatctgacatggaagcagttactggcaagtccagtctagtttctggtgataatgtgaaaacgggatgctctataaacagattatgtcttgtaagggtgctgattagagcatttaaggaaggttcttttgaagagggtgctgttgtttgtgccccactcccatcagatctttcagcctggaaccggaagaccagatcagaagaggaggaagaagaatgtctagaaaaatgggaactccagctccctcaatcccatgtaagttcttatttctcttggctggatcctagcaccagcaatctccagctgccaaacggcgattctacacgaaaggcattcagatggccgataggcttcatcacgacgggttttgtccatggaagtagtgggcaagatgctgttgcagttgccttctgcgaagcaaagcttctcgcggtgttgaggcggcagcaatggaggacacatgaaagtctgaagcgcaaagacatctgtgtccttgtaaggaatgcaagatcagcggcataccgacgagcactcgcaacaattgtcctggagcagcaagaggatgaccttaagtttctctag
More
|
|||||||
| Protein seq | MAGVPPPPRQLDVRRFAAARAGELRSLHESVSARLAGRLTQPRSARRRTTGHLPSNKRRRRLGRDAEAADGTEEEEGRPSRRVRRRRELAGNPAEGFSAAGDGARRLRTHLWHAKRFSMERRWGFVLPIGAHGRGRGSRTVLKWLKNGTVVHDASYFTPVELDGPEDSLLSIVRMVLHPSPQDKTPGLKHLHGQVMRGVCYENAMLCRVGCPHLEIVGPVTYMWRPFLREGGELETEDVDLSNSQIISDERNSLRRQLWIWIHPSALSEGLETLRAACHQQMQESGDTISCCSLEGKMARLEVMGSNAMQSLKSILKPVSNPSISTKLVNKNNVTTSTDPLYCSTGSHLLKRSVFDNADILQCGAILSMIVHDPRDNSVEGTDSSKTVSLDQNNQLMEEYQVPNADETPSGIGNILSSIWLNPGNHDLALSDCRELWDSSLKINPPVDEKILCMEKHHRRMKFFCLDSGNDQGQTSQEKDSIGRSCPVILLKHAKGSLISVGWSVILPLSWVKPFWFYLVSHGAHAIGLRERRWIASKLKMPCFPYDYPDSKAYSLFMAEEAAVLDKATNCRPSSMRPPRVPVPPLWHCVIASFRKGDGILSNLEDDLKSVATVLSESIPVNSNSGDAESSPTSAPTSFQLLVPRTIQVLRQYVKKIDEKYLNSSDMEAVTGKSSLVSGDNVKTGCSINRLCLVRVLIRAFKEGSFEEGAVVCAPLPSDLSAWNRKTRSEEEEEECLEKWELQLPQSHVSSYFSWLDPSTSNLQLPNGDSTRKAFRWPIGFITTGFVHGSSGQDAVAVAFCEAKLLAVLRRQQWRTHESLKRKDICVLVRNARSAAYRRALATIVLEQQEDDLKFL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.059386 | 0.025588 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0677500 | RBH | 0.523882 | 0.617424 | 1.378420 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45250 | RBH | 0.352758 | 0.413491 | 0.353312 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0677500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023900 | RBH | 0.136281 | 0.941221 | 2.884898 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023590 | RBH | 0.0 | 0.385141 | 1.234081 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023230 | RBH | 0.151328 | 0.000000 | 2.233977 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023190 | RBH | 0.000000 | 0.021157 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023810 | RBH | 0.000000 | 0.000000 | 4.628242 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0423500 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024120 | RBH | 0.103579 | 0.0 | 0.404307 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0433000 | RBH | 1.740108 | 4.448909 | 11.47496 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023860 | RBH | 0.101332 | 0.084499 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023870 | RBH | 0.130461 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023440 | RBH | 3.879039 | 2.263177 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023130 | RBH | 0.253349 | 0.0 | 0.370752 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023350 | RBH | 0.000000 | 0.497369 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023410 | RBH | 0.143072 | 0.956373 | 0.126342 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023850 | RBH | 1.021474 | 1.032073 | 0.421065 |
