Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0423500 | OGI:11079580 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr11:31612730-31613995 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGAGAAACTTAGGGTCATCCTCTTGCTGCTCCAGGACAATTGTTGCCAGTGCTCGTCGGTATGCCGCTGATCTTGCATTCCTAACAAGGACACAGATGTCTTTGCGCTTCAGATTTTCATGTGTCCATTGCTGCCGCCTCAACACCGCGAGAAGCTTTGCTTCGCAGAAGGCAATTGCAACAGCATCTCGCCCACTACTGTAATATGTAAAACAGATTGCAGTTAAGGTTTATTACTCAGAATTGCGCTGGCATGTAGCGAGGGGGACTGGGGATAGGCAAGATTACCTTCCATGGACAAAACCCGTCGTGACAAAGCCTATCGGCCATCTGAACGCCTTTCGTGTAGAATCATCGTTTGGCAGCTGAAGATTGCTGGTGCTAGGATTGAGGGAGCTGGAGTTCCCATTTTTCTAGGCGTTCTTCTTCGTCCTCTTCTGATCTGTTAGATGCATAAACAGGGATGAGCTTCGTCAATTGATATTCCCAGCACTCATCTCATACAGAAGAATACAGTGGGATACAGAAAAAAAAGATCTGAACAAATAGCAGAATCTAGCAAATGAATATATTTAAAACTTAAAAGCCAGAATCAACTTAAGAAATTAGATGATAATCAATCGGACAGCACCATTGATCCAATGTTGTAAAGTCACTTGCAAGTGAACCAAAAAATTTACAGCTAAATGAATAATATACCCTCGTCATGAGGTGCTGAAGAAATAAATTGTGAGTACTGACCTGGTTTTCCGGTTCCAGGCTGAAAGATCTGATGGGAGTGGGGCACAAACAACAGCACCCTCTTCAAAAGAACCTTCCTTAAATGCTCTGATCAGCACCCATACAAGACATAATCTGTGTCGAAACTAGATTTCGGCAATAATAAAAGGGGGTGGCTATCAAGCTGGAAAAGTGTATGGGTTTGGAGACAAAGGATTTTATACAGGTTCAGGCCTTCTTATTAAAGAAGTAATACCCTACTCCTGTCCGGGGATGAATCCGCCGAGTGTATTATTGATTGTATGATTTGGGAAAAATCAGCATATGCCCCTAGGGGCGCCCGGACCCCCCTTATATATGGGAAGGAGTCCGGGTTACAAAAGATAATCTATATTCCTAACGGAATATGAAGATACAGGTAAAATACAGTCGTAACCGACTAAGTTTCAGGGTGTTTCCTTGATACACAAGTTAAGAAACAAACCCAAGATACAGATAAGATATTCTATCTACATTAGGTATCCTGTACCCAGTTCGAATACCAT
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| CDS seq | ATGGTATTCGAACTGGGTACAGGATACCTAATAGCATTTAAGGAAGGTTCTTTTGAAGAGGGTGCTGTTGTTTGTGCCCCACTCCCATCAGATCTTTCAGCCTGGAACCGGAAAACCAGCAATCTTCAGCTGCCAAACGATGATTCTACACGAAAGGCGTTCAGATGGCCGATAGGCTTTGTCACGACGGGTTTTGTCCATGGAAGTAGTGGGCGAGATGCTGTTGCAATTGCCTTCTGCGAAGCAAAGCTTCTCGCGGTGTTGAGGCGGCAGCAATGGACACATGAAAATCTGAAGCGCAAAGACATCTGTGTCCTTGTTAGGAATGCAAGATCAGCGGCATACCGACGAGCACTGGCAACAATTGTCCTGGAGCAGCAAGAGGATGACCCTAAGTTTCTCTAG
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| Protein seq | MVFELGTGYLIAFKEGSFEEGAVVCAPLPSDLSAWNRKTSNLQLPNDDSTRKAFRWPIGFVTTGFVHGSSGRDAVAIAFCEAKLLAVLRRQQWTHENLKRKDICVLVRNARSAAYRRALATIVLEQQEDDPKFL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0423500 | OsMH63_11T0423500.1 | Chr11 | 31612730 | 31613995 | - | maker | ||
| CDS seq | ATGGTATTCGAACTGGGTACAGGATACCTAATAGCATTTAAGGAAGGTTCTTTTGAAGAGGGTGCTGTTGTTTGTGCCCCACTCCCATCAGATCTTTCAGCCTGGAACCGGAAAACCAGCAATCTTCAGCTGCCAAACGATGATTCTACACGAAAGGCGTTCAGATGGCCGATAGGCTTTGTCACGACGGGTTTTGTCCATGGAAGTAGTGGGCGAGATGCTGTTGCAATTGCCTTCTGCGAAGCAAAGCTTCTCGCGGTGTTGAGGCGGCAGCAATGGACACATGAAAATCTGAAGCGCAAAGACATCTGTGTCCTTGTTAGGAATGCAAGATCAGCGGCATACCGACGAGCACTGGCAACAATTGTCCTGGAGCAGCAAGAGGATGACCCTAAGTTTCTCTAG
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| Protein seq | MVFELGTGYLIAFKEGSFEEGAVVCAPLPSDLSAWNRKTSNLQLPNDDSTRKAFRWPIGFVTTGFVHGSSGRDAVAIAFCEAKLLAVLRRQQWTHENLKRKDICVLVRNARSAAYRRALATIVLEQQEDDPKFL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45250 | RBH | 0.352758 | 0.413491 | 0.353312 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023890 | SBH | 0.0 | 0.0 | 2.412395 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023590 | RBH | 0.0 | 0.385141 | 1.234081 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023230 | RBH | 0.151328 | 0.000000 | 2.233977 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023190 | RBH | 0.000000 | 0.021157 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023810 | RBH | 0.000000 | 0.000000 | 4.628242 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024110 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0432200 | RBH | 4.471516 | 17.1407165 | 21.8625135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023860 | SBH | 0.101332 | 0.084499 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023870 | RBH | 0.130461 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023430 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023120 | SBH | 0.0 | 0.0 | 2.104256 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023350 | RBH | 0.000000 | 0.497369 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023400 | SBH | 0.0 | 0.0 | 4.501593 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023840 | RBH | 0.0 | 0.0 | 0.0 |
