Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0022290 | OGI:11073190 | 5/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:27934435-27938379 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggagcaggcgatggtaaccgccgacgggggtgccatgaactccgtcctctgcaagctcacccacttgctcgctgacaacggaagcttgcccatggatgtgaggagcagaatcgtgcatctgaaggacgagattgagagtttacacgctttcctcctcagcttgtcagagacgagggttcagggggcgcgagcgaggtcctggatggtggcggcgcgcaagttctcctacgaaattgacgacatcctcgacggcttggtgatgaagcccgaccagaagctggctgattttcagaggttcatcgacgagagcacgaaccttctgacattggtcgacagtcgccgccatttcaggaaggggatcgaagatctgtttaggtccccttactgggattttctgtttgacctcaaatatccccctcccgattcaggtagctcttctgcgcaaggcccctcacaagaatcgcctgtggaacctgttggcattggcatcatgagggatggcctcatcagtctactgaaaagggttgatggtcacaagcttaaggtgatatctatagtaggatgtacaggcctggggaagaaaacacttgccatggaggtacacagaaaactggagacagaatttgattgtgccgcgtttgtgaagattgacccaaaatgtagcacaaatgatgttgtgagaaaaatactctctgaggttaaaaagccaaaacttcatggcaaacaagtgcaggaagatcaacaactcaccagtcaagaaggtcgacagctcatcggtgaactacacgaattcttgaaggataagaggtacatacatttgcataaaactaattattgtttgtgcagcatacaacacttgaacaatattgctcatttgccacaatttcattttcctttcctttcaacaaaatgaaaggatactattcctttcaacattcagtaaATAAATGAGGTTAGCATATGATGaagaagtaaaaggaaaaaaaacaagaataagcttcagttagggagttacttaatttggtactccattgtaagaaagaagtttactagtatcaaaagtagtagtagaacagcataatgactaattgagtagagatggttatctattaatagttgatagcttttgtgttgtttgttactagttacatacgccttcatttttccaaataaaagcctctgatccttttgttctttgatgttttgagctgtacatggatgaattcattgatcatcagggcattgttttacccctttttgttttgttctgttgcttactagctttattctcattgatttgcatttccttttcttcgttgtgtgttttgtgtatttgccaagtcatgatccactaatatacctttgttgggttggtacacagtggaaaacatccataaagtagtttacatatggctcctacttgctatgttctgtataaccttgtagaatcataacataacttcagataaatcaaggaaccaaaatagaatgcaaactagttTAtatatttttatgccatctatttctgaacttttgtttttggttggtcaaatttgtaaagactcagagatcatggcataaagttaatgccaaatgttcaattatctctattctttccaataacttttggacaaaatatgtagtactgatgtacaactttgcacaaaagaaattataagagttatttgcaagatgtcatctcttatttgttcggatgaaatcaaactagatgttcttcaagcatatgctgaacaactcaaaaatactttcacatattagtttctcgtcgctaTtttgcttgcttccagaggacaaaacaaaattctcggaacacgttattatcagactatgcattaacaatgcttgctactacctttaaattctttttaaagggacctttaatttcTttttgggctcaagctttattttaatttttttcttgaaatttggtagatacttcattacgatatgtgatgtacataatgcatcatcctggagaattatcaaggaagcattgccagagaatgaatacagcagcaggataatgacaacaacttgtataaattccatagctcacacatgttgccctcacccaggtgactttgtctatcagatgaaacctcttacttctgctgactctaaaaacttatttccgttgagcgtttctggtcctgacatactaaaagtttataatgacattctgaaaatgtctggttatacgccattagcaataatcagccttgcttcagtactggccaagagagagtcaacaaaggaatcatgggaagaagttaggaattctttatgttttgctccagggaatattcgagagcttgaagatagacttaagattttatcacaaaactattatgatcttcctagcaacctgaaagcctgtgccttgtacttaagcatgttacctgtaaatcacaaaattgatagagaatggttagtaaggaaatggattgcagaaggatttgtcagtgaagtgaagggccttggtccagaagatgttgccaagaatttccttgatgtgcttgttgatagaaactttattgaaccggttgactgtagcaacattgTtttggtggaaaggtaccaagtccactatatgatgctctgcctcctcaaattgatatcacagcaggagaagttcattacattactgcatgccccagatattcagaattcacatagtaatatcagctgccggctatctgtctactatcctaatccaaaggatacagtcaaagcagataaaccaaaggatacagtcaaagcagataaagtggacttaagtcatgttcgttccataactgtttttggtggtggaacacaaattgccttcAaaaattttaacaacatgcgggtgttggatctagaaggttgcatgggtgtagataatgcaaatatgaaggatatatgttgtatgctcctgttgaaatatttgggccttaaggagactcaagtaagtgagcttccgcagcaaatcgaaaggctgcaacatctggagacattggatgtaagaaagacaaatgtaacagagctaccaaaagaagctgttcggctcaggaagttggtgaatctacttgttggcgacagtgacatccatcaagggctaaagttgcctgaagggagtagggatttgaaattgctaaaagtgctgcgtaccattgatttaagagaaaaccccggcaacattttgaaggatcttgctgagctatcagaactaagggaactcgaaatagttttatcttatgatgggccaagcaacaagaagcagaatgatgatatagtgtctttcctgatgaagtgtagcaaccttcaatccctggtaaTttatggtgaatttgtttgtagtatagatacacctcatacatcatgtcttcgtcttcttcagaaacttagggtgagcagaagatttgtgaaggttccttcgtggattgcaaagcttttttttcttgtccagctagatattagagtgtgcaaactaaatgaggacgatttgtgtatccttcgggagttacccagcctggagaggttctccttaggtctggaaatcctcccaagaacacaaccaatactcataagcaaaacaggctatgtaagtctggatacgttctgTtttgattgcaagatgccatggttaagtttccaagagggggctatgccaaagctgaaacatcttgagttaaaattctacggaggctcgcggactcagattcctactggtaccaagctactcttaagtctcaaaaaggttgtCctgcggtatcctcaagggtgtgaaagaaatgcaggcatcaaagaaactatagatgccttgaaaggagatgctgatgggcatgccaattggatcaccatgcacaggagtggctccgaggagaactttccatggaaactcactgctgacaaggggaagcagaaaattgatgggtag
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| CDS seq | atggcggagcaggcgatggtaaccgccgacgggggtgccatgaactccgtcctctgcaagctcacccacttgctcgctgacaacggaagcttgcccatggatgtgaggagcagaatcgtgcatctgaaggacgagattgagagtttacacgctttcctcctcagcttgtcagagacgagggttcagggggcgcgagcgaggtcctggatggtggcggcgcgcaagttctcctacgaaattgacgacatcctcgacggcttggtgatgaagcccgaccagaagctggctgattttcagaggttcatcgacgagagcacgaaccttctgacattggtcgacagtcgccgccatttcaggaaggggatcgaagatctgtttaggtccccttactgggattttctgtttgacctcaaatatccccctcccgattcaggtagctcttctgcgcaaggcccctcacaagaatcgcctgtggaacctgttggcattggcatcatgagggatggcctcatcagtctactgaaaagggttgatggtcacaagcttaaggtgatatctatagtaggatgtacaggcctggggaagaaaacacttgccatggaggtacacagaaaactggagacagaatttgattgtgccgcgtttgtgaagattgacccaaaatgtagcacaaatgatgttgtgagaaaaatactctctgaggttaaaaagccaaaacttcatggcaaacaagtgcaggaagatcaacaactcaccagtcaagaaggtcgacagctcatcggtgaactacacgaattcttgaaggataagagatacttcattacgatatgtgatgtacataatgcatcatcctggagaattatcaaggaagcattgccagagaatgaatacagcagcaggataatgacaacaacttgtataaattccatagctcacacatgttgccctcacccaggtgactttgtctatcagatgaaacctcttacttctgctgactctaaaaacttatttccgttgagcgtttctggtcctgacatactaaaagtttataatgacattctgaaaatgtctggttatacgccattagcaataatcagccttgcttcagtactggccaagagagagtcaacaaaggaatcatgggaagaagttaggaattctttatgttttgctccagggaatattcgagagcttgaagatagacttaagattttatcacaaaactattatgatcttcctagcaacctgaaagcctgtgccttgtacttaagcatgttacctgtaaatcacaaaattgatagagaatggttagtaaggaaatggattgcagaaggatttgtcagtgaagtgaagggccttggtccagaagatgttgccaagaatttccttgatgtgcttgttgatagaaactttattgaaccggttgactgtagcaacattgTtttggtggaaaggtaccaagtccactatatgatgctctgcctcctcaaattgatatcacagcaggagaagttcattacattactgcatgccccagatattcagaattcacatagtaatatcagctgccggctatctgtctactatcctaatccaaaggatacagtcaaagcagataaaccaaaggatacagtcaaagcagataaagtggacttaagtcatgttcgttccataactgtttttggtggtggaacacaaattgccttcAaaaattttaacaacatgcgggtgttggatctagaaggttgcatgggtgtagataatgcaaatatgaaggatatatgttgtatgctcctgttgaaatatttgggccttaaggagactcaagtaagtgagcttccgcagcaaatcgaaaggctgcaacatctggagacattggatgtaagaaagacaaatgtaacagagctaccaaaagaagctgttcggctcaggaagttggtgaatctacttgttggcgacagtgacatccatcaagggctaaagttgcctgaagggagtagggatttgaaattgctaaaagtgctgcgtaccattgatttaagagaaaaccccggcaacattttgaaggatcttgctgagctatcagaactaagggaactcgaaatagttttatcttatgatgggccaagcaacaagaagcagaatgatgatatagtgtctttcctgatgaagtgtagcaaccttcaatccctggtaaTttatggtgaatttgtttgtagtatagatacacctcatacatcatgtcttcgtcttcttcagaaacttagggtgagcagaagatttgtgaaggttccttcgtggattgcaaagcttttttttcttgtccagctagatattagagtgtgcaaactaaatgaggacgatttgtgtatccttcgggagttacccagcctggagaggttctccttaggtctggaaatcctcccaagaacacaaccaatactcataagcaaaacaggctatgtaagtctggatacgttctgTtttgattgcaagatgccatggttaagtttccaagagggggctatgccaaagctgaaacatcttgagttaaaattctacggaggctcgcggactcagattcctactggtaccaagctactcttaagtctcaaaaaggttgtCctgcggtatcctcaagggtgtgaaagaaatgcaggcatcaaagaaactatagatgccttgaaaggagatgctgatgggcatgccaattggatcaccatgcacaggagtggctccgaggagaactttccatggaaactcactgctgacaaggggaagcagaaaattgatgggtag
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| Protein seq | MAEQAMVTADGGAMNSVLCKLTHLLADNGSLPMDVRSRIVHLKDEIESLHAFLLSLSETRVQGARARSWMVAARKFSYEIDDILDGLVMKPDQKLADFQRFIDESTNLLTLVDSRRHFRKGIEDLFRSPYWDFLFDLKYPPPDSGSSSAQGPSQESPVEPVGIGIMRDGLISLLKRVDGHKLKVISIVGCTGLGKKTLAMEVHRKLETEFDCAAFVKIDPKCSTNDVVRKILSEVKKPKLHGKQVQEDQQLTSQEGRQLIGELHEFLKDKRYFITICDVHNASSWRIIKEALPENEYSSRIMTTTCINSIAHTCCPHPGDFVYQMKPLTSADSKNLFPLSVSGPDILKVYNDILKMSGYTPLAIISLASVLAKRESTKESWEEVRNSLCFAPGNIRELEDRLKILSQNYYDLPSNLKACALYLSMLPVNHKIDREWLVRKWIAEGFVSEVKGLGPEDVAKNFLDVLVDRNFIEPVDCSNIVLVERYQVHYMMLCLLKLISQQEKFITLLHAPDIQNSHSNISCRLSVYYPNPKDTVKADKPKDTVKADKVDLSHVRSITVFGGGTQIAFKNFNNMRVLDLEGCMGVDNANMKDICCMLLLKYLGLKETQVSELPQQIERLQHLETLDVRKTNVTELPKEAVRLRKLVNLLVGDSDIHQGLKLPEGSRDLKLLKVLRTIDLRENPGNILKDLAELSELRELEIVLSYDGPSNKKQNDDIVSFLMKCSNLQSLVIYGEFVCSIDTPHTSCLRLLQKLRVSRRFVKVPSWIAKLFFLVQLDIRVCKLNEDDLCILRELPSLERFSLGLEILPRTQPILISKTGYVSLDTFCFDCKMPWLSFQEGAMPKLKHLELKFYGGSRTQIPTGTKLLLSLKKVVLRYPQGCERNAGIKETIDALKGDADGHANWITMHRSGSEENFPWKLTADKGKQKIDG |
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| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0022290 | OsNaBo_11g0022290.01 | Chr11 | 27934435 | 27938379 | + | NAM | ||
| CDS seq | atggcggagcaggcgatggtaaccgccgacgggggtgccatgaactccgtcctctgcaagctcacccacttgctcgctgacaacggaagcttgcccatggatgtgaggagcagaatcgtgcatctgaaggacgagattgagagtttacacgctttcctcctcagcttgtcagagacgagggttcagggggcgcgagcgaggtcctggatggtggcggcgcgcaagttctcctacgaaattgacgacatcctcgacggcttggtgatgaagcccgaccagaagctggctgattttcagaggttcatcgacgagagcacgaaccttctgacattggtcgacagtcgccgccatttcaggaaggggatcgaagatctgtttaggtccccttactgggattttctgtttgacctcaaatatccccctcccgattcaggtagctcttctgcgcaaggcccctcacaagaatcgcctgtggaacctgttggcattggcatcatgagggatggcctcatcagtctactgaaaagggttgatggtcacaagcttaaggtgatatctatagtaggatgtacaggcctggggaagaaaacacttgccatggaggtacacagaaaactggagacagaatttgattgtgccgcgtttgtgaagattgacccaaaatgtagcacaaatgatgttgtgagaaaaatactctctgaggttaaaaagccaaaacttcatggcaaacaagtgcaggaagatcaacaactcaccagtcaagaaggtcgacagctcatcggtgaactacacgaattcttgaaggataagagatacttcattacgatatgtgatgtacataatgcatcatcctggagaattatcaaggaagcattgccagagaatgaatacagcagcaggataatgacaacaacttgtataaattccatagctcacacatgttgccctcacccaggtgactttgtctatcagatgaaacctcttacttctgctgactctaaaaacttatttccgttgagcgtttctggtcctgacatactaaaagtttataatgacattctgaaaatgtctggttatacgccattagcaataatcagccttgcttcagtactggccaagagagagtcaacaaaggaatcatgggaagaagttaggaattctttatgttttgctccagggaatattcgagagcttgaagatagacttaagattttatcacaaaactattatgatcttcctagcaacctgaaagcctgtgccttgtacttaagcatgttacctgtaaatcacaaaattgatagagaatggttagtaaggaaatggattgcagaaggatttgtcagtgaagtgaagggccttggtccagaagatgttgccaagaatttccttgatgtgcttgttgatagaaactttattgaaccggttgactgtagcaacattgTtttggtggaaaggtaccaagtccactatatgatgctctgcctcctcaaattgatatcacagcaggagaagttcattacattactgcatgccccagatattcagaattcacatagtaatatcagctgccggctatctgtctactatcctaatccaaaggatacagtcaaagcagataaaccaaaggatacagtcaaagcagataaagtggacttaagtcatgttcgttccataactgtttttggtggtggaacacaaattgccttcAaaaattttaacaacatgcgggtgttggatctagaaggttgcatgggtgtagataatgcaaatatgaaggatatatgttgtatgctcctgttgaaatatttgggccttaaggagactcaagtaagtgagcttccgcagcaaatcgaaaggctgcaacatctggagacattggatgtaagaaagacaaatgtaacagagctaccaaaagaagctgttcggctcaggaagttggtgaatctacttgttggcgacagtgacatccatcaagggctaaagttgcctgaagggagtagggatttgaaattgctaaaagtgctgcgtaccattgatttaagagaaaaccccggcaacattttgaaggatcttgctgagctatcagaactaagggaactcgaaatagttttatcttatgatgggccaagcaacaagaagcagaatgatgatatagtgtctttcctgatgaagtgtagcaaccttcaatccctggtaaTttatggtgaatttgtttgtagtatagatacacctcatacatcatgtcttcgtcttcttcagaaacttagggtgagcagaagatttgtgaaggttccttcgtggattgcaaagcttttttttcttgtccagctagatattagagtgtgcaaactaaatgaggacgatttgtgtatccttcgggagttacccagcctggagaggttctccttaggtctggaaatcctcccaagaacacaaccaatactcataagcaaaacaggctatgtaagtctggatacgttctgTtttgattgcaagatgccatggttaagtttccaagagggggctatgccaaagctgaaacatcttgagttaaaattctacggaggctcgcggactcagattcctactggtaccaagctactcttaagtctcaaaaaggttgtCctgcggtatcctcaagggtgtgaaagaaatgcaggcatcaaagaaactatagatgccttgaaaggagatgctgatgggcatgccaattggatcaccatgcacaggagtggctccgaggagaactttccatggaaactcactgctgacaaggggaagcagaaaattgatgggtag
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| Protein seq | MAEQAMVTADGGAMNSVLCKLTHLLADNGSLPMDVRSRIVHLKDEIESLHAFLLSLSETRVQGARARSWMVAARKFSYEIDDILDGLVMKPDQKLADFQRFIDESTNLLTLVDSRRHFRKGIEDLFRSPYWDFLFDLKYPPPDSGSSSAQGPSQESPVEPVGIGIMRDGLISLLKRVDGHKLKVISIVGCTGLGKKTLAMEVHRKLETEFDCAAFVKIDPKCSTNDVVRKILSEVKKPKLHGKQVQEDQQLTSQEGRQLIGELHEFLKDKRYFITICDVHNASSWRIIKEALPENEYSSRIMTTTCINSIAHTCCPHPGDFVYQMKPLTSADSKNLFPLSVSGPDILKVYNDILKMSGYTPLAIISLASVLAKRESTKESWEEVRNSLCFAPGNIRELEDRLKILSQNYYDLPSNLKACALYLSMLPVNHKIDREWLVRKWIAEGFVSEVKGLGPEDVAKNFLDVLVDRNFIEPVDCSNIVLVERYQVHYMMLCLLKLISQQEKFITLLHAPDIQNSHSNISCRLSVYYPNPKDTVKADKPKDTVKADKVDLSHVRSITVFGGGTQIAFKNFNNMRVLDLEGCMGVDNANMKDICCMLLLKYLGLKETQVSELPQQIERLQHLETLDVRKTNVTELPKEAVRLRKLVNLLVGDSDIHQGLKLPEGSRDLKLLKVLRTIDLRENPGNILKDLAELSELRELEIVLSYDGPSNKKQNDDIVSFLMKCSNLQSLVIYGEFVCSIDTPHTSCLRLLQKLRVSRRFVKVPSWIAKLFFLVQLDIRVCKLNEDDLCILRELPSLERFSLGLEILPRTQPILISKTGYVSLDTFCFDCKMPWLSFQEGAMPKLKHLELKFYGGSRTQIPTGTKLLLSLKKVVLRYPQGCERNAGIKETIDALKGDADGHANWITMHRSGSEENFPWKLTADKGKQKIDG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.323573 | 5.644551 | 3.441263 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0700100 | SBH | 0.0 | 0.0 | 0.474086 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g47447 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0700100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022010 | RBH | 1.292283 | 3.618498 | 5.283396 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022000 | RBH | 0.083870 | 1.540886 | 1.143267 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020210 | SBH | 2.072987 | 12.964246 | 6.469787 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0016690 | SBH | 0.0 | 0.021097 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016970 | SBH | 0.0 | 0.000000 | 1.009710 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0321900 | SBH | 1.041143 | 3.9594775 | 5.2031815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022460 | RBH | 0.067718 | 0.649925 | 0.207364 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0438900 | SBH | 1.2510465 | 2.3554675 | 4.747685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024500 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022310 | RBH | 0.553999 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020210 | SBH | 4.664815 | 58.803665 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020010 | SBH | 0.956146 | 0.0 | 1.243245 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0016900 | SBH | 0.097757 | 0.743920 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020680 | SBH | 0.118972 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
