Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_11g0021770 OGI:11072350 | 14/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr11:27553245-27556808
Gene Symbol PIKH, Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
DNA seq

ttaatcttcatctcTGTCACTAAACACTGGAGAAGATACATATTCTTCAACGATTTCTTTTCCCTTATGCTGTTGATGCACAACAGAATTTCCTGCAAACAAGAGATTGGATTTACTGCGAAGTGCAAACTGCATTAAAACAATGCATCCCAATTCACAAATGAGAAAGCTTTCAAAATAGAATCTTTGCAATGAAAGCAATACTTCACAAAATGAGCAAGTTAGAGACTCATGTTGCTTCATGGAAGATCATTATGTTGCAGTAAGGTAAATAATGATCTAGGAGTATCGCAGAAAAAGAAACAAGGAGAAATAACTCAAAAGGAAATTGGTTCATGCAAAATCAGCTTGGGGATACCTGATGAATGTTCTGAAAAATTGGGGCAGTGCTCAACAATTATGTCGATACATCTTAATCTCAGGCCTTGGGGAATAGAGCCCAGCATAGAACAACCAGAAAGCCGTACAACTCGCAGGGAAGGTAGGTTTTCCAACCAATCTGGTAAAGTCTCTATTTTACTGCAGTTATCAATTGTCAAGCTTTCAATAGAGGAAAGGTGCTGCAAACCCCAAGGGAGGCAGGTCAACTCATGACATCCACTTATATCCAACTCAATGAGCTCAACAAGATCCTGCAAACCCTTCAAGCTTGACGAAGCTAGCAGCTCATCGCAGAAAGAAATCGAAACATGTTCCAAGCCCTTCACCAATCCTTTCAGGCTTCCTTCTGAGGTATACAACAACCTGTTATCCATCCACAAGATCAATTTTTCAATTGATGGAAACTCCATATGCACTGCTTTCAATTTTGGGCACTGAATTgatgactagttctctgagacgaggaaacatattttccgtgggtgtttgtccccaaattactaagttaggcatataagagaaagttagcctctctagtgaggggaatgtaccattgtgaccatagaaactatctttgatacagctgactgtttcagctccactaatctcagcaatctttaggcatggtagctgtcccaagggaggcagcaacttcagattaactagcctgatctctgagagggacgtgagatagggttcaatgcttgtcatccaagttggaaacttgttgccttcatatgcaacaatttccaatgcttttaaTCgctggtgtggttgaagactttcaagtacagcataagcaTttttgttggtgttttcagaatccataTtccacttcaatgtcaatgacgcaaggtttcttttgccttgcagatttgcatatcttgcaTcgacaaggtccagatccagaaccttctcaaggttttcaagagttagcttattgaggtttggcaatgattgcaactctgacaacataTtttcaccactgttgcagacaacataCcccagcagagtctgaagatttgtaagttgacccatgttacaaggcatttgagtaagtgatgagcaatcaataacattaagatactcaaggcttttCattttactcgtgttcctaGgcaaagcaacaagatggtgacaaccTtcaaggtttagcttccgtagttgaacaagctgacacatattctcatgaagtttccggagtttcttacaatgtgatacttccagagtttgcagattctgtaatttggagactgacttggggatgacttcaatatctgtccatgaaagatcgagatatctcaaCTcggaaagaagcatagtaaaTtttttaggcagcttccttattttattggctcgcaaactaaggacccgtaTGtttctgaatgattggtagaatgactggggtatctcTttgaactcacatcggctgtcagataagcatgatcttctattttgaagtacaataagtgttttcagattgTttagttgattcaagcatgttgggaacgacgcactcgatgaatgaacaattaatgaagcatgacgaataaaacgctgtactgtGggagctttttggccaactggtataactgcactaactttccTttgcatatAttgagcatagatatgcAatAttttgtgcatcctataagttgccttccttccctgctcttcttctagtgggtaaaagaactcatcaaggagctgctgaagaaatcctcctctttgggtatgagttacagttgatggtatgaaatgTggagccaccaaatgatctcctaactcttcgacatcaaagtcatagtccaatgggtacagtgcacagtacaaaaGacagctcagtaattcagaaggaagatggtgataactcaccagcgcgctgtcagaaactatattgccaccaggTtgcccatcaaaGTgTtgcagaaatctttcccagaaactatcttcagaaagtgtatcaatatatgttagcagttgtttccagaactcatctggataaatcgtgccagagacttccataaatccttcccaggcctgtatgttctgtgactgctgAagcaatcgacatgcatAttcaagtagtaagggcactccaccacaTtttttggcaatcaccatagcaacttcctcaatgaacccactgaagccatgcacatggtgtgaaTctgacctttgacccatgaaatagttcaagtactcctgcttacggtgtgcatcgttccattcatctacaaaggagtatAagaaTtcctgctccaatggctgcaggaagtagctcttagtggTgggcatcctcgatgcaaTagcaggtattcgaCtagtgaatattaTtgtgccaTttgaaggcagagcctgcatcagagtgtcccattctcctgcattcacataccAtacatcgtcaagaatgagcAaataattcacttcacgcagagcatgatgaagaaggatctttgcagtcttccgagagaattcagcttcgatccatgtattcaatatcctcatcaaaatcttcctgagattaaactgttgtgaaacatgcacccagtgctgcacatgaaactttcccttgatcctaccatcatcaaacagggcTTgtgcaagacgggtttttccaattCccggggctcctacaatgggcataacaaaaGGgatgcttacatcggtatgaccaaCcctgtccatgagcaaaatcttcaccatcttctccaccagctctgacctccccaccatcctgctccgtgcactggtctggatatccatacctatgctggtaggagagtcatacaacagatggcgaggagcataattactatgctctttcacgacgaagtCccttagtgtgacaaagtcttgaactgctttcatgagctcatggacagttgcagagtgaacaaaacaggctctAaagaaaaatgcaggaacctggtaccaacaacctgctcttgtttgcatgtGCAgcacttcttccagcacttcacaaaggtgagtgctttgtgacctgatgcaaaacatgagattcatgttggctcccttcctaatggagggattattactgatatcattagcagaggcacgaaggtggcggagcaatgtacccatgcccagtagttgaaactgctcctccatgcgggccaagttcagcatgtccatcaccatttgcagctcgcctcctgccat

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CDS seq

atggcaggaggcgagctgcaaatggtgatggacatgctgaacttggcccgcatggaggagcagtttcaactactgggcatgggtacattgctccgccaccttcgtgcctctgctaatgatatcagtaataatccctccattaggaagggagccaacatgaatctcatgttttgcatcaggtcacaaagcactcacctttgtgaagtgctggaagaagtgcTGCacatgcaaacaagagcaggttgttggtaccaggttcctgcatttttcttTagagcctgttttgttcactctgcaactgtccatgagctcatgaaagcagttcaagactttgtcacactaaggGacttcgtcgtgaaagagcatagtaattatgctcctcgccatctgttgtatgactctcctaccagcataggtatggatatccagaccagtgcacggagcaggatggtggggaggtcagagctggtggagaagatggtgaagattttgctcatggacaggGttggtcataccgatgtaagcatcCCttttgttatgcccattgtaggagccccggGaattggaaaaacccgtcttgcacAAgccctgtttgatgatggtaggatcaagggaaagtttcatgtgcagcactgggtgcatgtttcacaacagtttaatctcaggaagattttgatgaggatattgaatacatggatcgaagctgaattctctcggaagactgcaaagatccttcttcatcatgctctgcgtgaagtgaattattTgctcattcttgacgatgtaTggtatgtgaatgcaggagaatgggacactctgatgcaggctctgccttcaaAtggcacaAtaatattcactaGtcgaatacctgctAttgcatcgaggatgcccAccactaagagctacttcctgcagccattggagcaggaAttctTatactcctttgtagatgaatggaacgatgcacaccgtaagcaggagtacttgaactatttcatgggtcaaaggtcagAttcacaccatgtgcatggcttcagtgggttcattgaggaagttgctatggtgattgccaaaaaAtgtggtggagtgcccttactacttgaaTatgcatgtcgattgctTcagcagtcacagaacatacaggcctgggaaggatttatggaagtctctggcacgatttatccagatgagttctggaaacaactgctaacatatattgatacactttctgaagatagtttctgggaaagatttctgcaAcACtttgatgggcaAcctggtggcaatatagtttctgacagcgcgctggtgagttatcaccatcttccttctgaattactgagctgtCttttgtactgtgcactgtacccattggactatgactttgatgtcgaagagttaggagatcatttggtggctccAcatttcataccatcaactgtaactcatacccaaagaggaggatttcttcagcagctccttgatgagttcttttacccactagaagaagagcagggaaggaaggcaacttataggatgcacaaaaTatTgcatatctatgctcaaTatatgcaaAggaaagttagtgcagttataccagttggccaaaaagctccCacagtacagcgttttattcgtcatgcttcattaattgttcattcatcgagtgcgtcgttcccaacatgcttgaatcaactaaAcaatctgaaaacacttattgtacttcaaaatagaagatcatgcttatctgacagccgatgtgagttcaaAgagataccccagtcattctaccaatcattcagaaaCAtacgggtccttagtttgcgagccaataaaataaggaagctgcctaaaaaAtttactatgcttctttccgAGttgagatatctcgatctttcatggacagatattgaagtcatccccaagtcagtctccaaattacagaatctgcaaactctggaagtatcacattgtaagaaactccggaaacttcatgagaatatgtgtcagcttgttcaactacggaagctaaaccttgaAggttgtcaccatcttgttgctttgcCtaggaacacgagtaaaatGaaaagccttgagtatcttaatgttattgattgctcatcacttactcaaatgccttgtaacatgggtcaacttacaaatcttcagactctgctgggGtatgttgtctgcaacagtggtgaaaAtatgttgtcagagttgcaatcattgccaaacctcaataagctaactcttgaaaaccttgagaaggttctggatctggaccttgtcgAtgcaagatatgcaaatctgcaaggcaaaagaaaccttgcgtcattgacattgaagtggaAtatggattctgaaaacaccaacaaaaAtgcttatgctgtacttgaaagtcttcaaccacaccagcGAttaaaagcattggaaattgttgcatatgaaggcaacaagtttccaacttggatgacaagcattgaaccctatctcacgtccctctcagagatcaggctagttaatctgaagttgctgcctcccttgggacagctaccatgcctaaagattgctgagattagtggagctgaaacagtcagctgtatcaaagatagtttctatggtcacaatgAAGGAAGCCTGAAAGGATTGGTGAAGGGCTTGGAACATGTTTCGATTTCTTTCTGCGATGAGCTGCTAGCTTCGTCAAGCTTGAAGGGTTTGCAGGATCTTGTTGAGCTCATTGAGTTGGATATAAGTGGATGTCATGAGTTGACCTGCCTCCCTTGGGGTTTGCAGCACCTTTCCTCTATTGAAAGCTTGACAATTGATAACTGCAGTAAAATAGAGACTTTACCAGATTGGTTGGAAAACCTACCTTCCCTGCGAGTTGTACGGCTTTCTGGTTGTTCTATGCTGGGCTCTATTCCCCAAGGCCTGAGATTAAGATGTATCGACATAATTGTTGAGCACTGCCCCAATTTTTCAGAACATTCATCAGGAAATTCTGTTGTGCATCAACAGCATAAGGGAAAAGAAATCGTTGAAGAATATGTATCTTCTCCAGTGTTTAGTGACAgagatgaagattaa

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Protein seq

MAGGELQMVMDMLNLARMEEQFQLLGMGTLLRHLRASANDISNNPSIRKGANMNLMFCIRSQSTHLCEVLEEVLHMQTRAGCWYQVPAFFFRACFVHSATVHELMKAVQDFVTLRDFVVKEHSNYAPRHLLYDSPTSIGMDIQTSARSRMVGRSELVEKMVKILLMDRVGHTDVSIPFVMPIVGAPGIGKTRLAQALFDDGRIKGKFHVQHWVHVSQQFNLRKILMRILNTWIEAEFSRKTAKILLHHALREVNYLLILDDVWYVNAGEWDTLMQALPSNGTIIFTSRIPAIASRMPTTKSYFLQPLEQEFLYSFVDEWNDAHRKQEYLNYFMGQRSDSHHVHGFSGFIEEVAMVIAKKCGGVPLLLEYACRLLQQSQNIQAWEGFMEVSGTIYPDEFWKQLLTYIDTLSEDSFWERFLQHFDGQPGGNIVSDSALVSYHHLPSELLSCLLYCALYPLDYDFDVEELGDHLVAPHFIPSTVTHTQRGGFLQQLLDEFFYPLEEEQGRKATYRMHKILHIYAQYMQRKVSAVIPVGQKAPTVQRFIRHASLIVHSSSASFPTCLNQLNNLKTLIVLQNRRSCLSDSRCEFKEIPQSFYQSFRNIRVLSLRANKIRKLPKKFTMLLSELRYLDLSWTDIEVIPKSVSKLQNLQTLEVSHCKKLRKLHENMCQLVQLRKLNLEGCHHLVALPRNTSKMKSLEYLNVIDCSSLTQMPCNMGQLTNLQTLLGYVVCNSGENMLSELQSLPNLNKLTLENLEKVLDLDLVDARYANLQGKRNLASLTLKWNMDSENTNKNAYAVLESLQPHQRLKALEIVAYEGNKFPTWMTSIEPYLTSLSEIRLVNLKLLPPLGQLPCLKIAEISGAETVSCIKDSFYGHNEGSLKGLVKGLEHVSISFCDELLASSSLKGLQDLVELIELDISGCHELTCLPWGLQHLSSIESLTIDNCSKIETLPDWLENLPSLRVVRLSGCSMLGSIPQGLRLRCIDIIVEHCPNFSEHSSGNSVVHQQHKGKEIVEEYVSSPVFSDRDED

Function Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_11g0021770 OsNaBo_11g0021770.01 Chr11 27553245 27556808 - NAM
CDS seq

atggcaggaggcgagctgcaaatggtgatggacatgctgaacttggcccgcatggaggagcagtttcaactactgggcatgggtacattgctccgccaccttcgtgcctctgctaatgatatcagtaataatccctccattaggaagggagccaacatgaatctcatgttttgcatcaggtcacaaagcactcacctttgtgaagtgctggaagaagtgcTGCacatgcaaacaagagcaggttgttggtaccaggttcctgcatttttcttTagagcctgttttgttcactctgcaactgtccatgagctcatgaaagcagttcaagactttgtcacactaaggGacttcgtcgtgaaagagcatagtaattatgctcctcgccatctgttgtatgactctcctaccagcataggtatggatatccagaccagtgcacggagcaggatggtggggaggtcagagctggtggagaagatggtgaagattttgctcatggacaggGttggtcataccgatgtaagcatcCCttttgttatgcccattgtaggagccccggGaattggaaaaacccgtcttgcacAAgccctgtttgatgatggtaggatcaagggaaagtttcatgtgcagcactgggtgcatgtttcacaacagtttaatctcaggaagattttgatgaggatattgaatacatggatcgaagctgaattctctcggaagactgcaaagatccttcttcatcatgctctgcgtgaagtgaattattTgctcattcttgacgatgtaTggtatgtgaatgcaggagaatgggacactctgatgcaggctctgccttcaaAtggcacaAtaatattcactaGtcgaatacctgctAttgcatcgaggatgcccAccactaagagctacttcctgcagccattggagcaggaAttctTatactcctttgtagatgaatggaacgatgcacaccgtaagcaggagtacttgaactatttcatgggtcaaaggtcagAttcacaccatgtgcatggcttcagtgggttcattgaggaagttgctatggtgattgccaaaaaAtgtggtggagtgcccttactacttgaaTatgcatgtcgattgctTcagcagtcacagaacatacaggcctgggaaggatttatggaagtctctggcacgatttatccagatgagttctggaaacaactgctaacatatattgatacactttctgaagatagtttctgggaaagatttctgcaAcACtttgatgggcaAcctggtggcaatatagtttctgacagcgcgctggtgagttatcaccatcttccttctgaattactgagctgtCttttgtactgtgcactgtacccattggactatgactttgatgtcgaagagttaggagatcatttggtggctccAcatttcataccatcaactgtaactcatacccaaagaggaggatttcttcagcagctccttgatgagttcttttacccactagaagaagagcagggaaggaaggcaacttataggatgcacaaaaTatTgcatatctatgctcaaTatatgcaaAggaaagttagtgcagttataccagttggccaaaaagctccCacagtacagcgttttattcgtcatgcttcattaattgttcattcatcgagtgcgtcgttcccaacatgcttgaatcaactaaAcaatctgaaaacacttattgtacttcaaaatagaagatcatgcttatctgacagccgatgtgagttcaaAgagataccccagtcattctaccaatcattcagaaaCAtacgggtccttagtttgcgagccaataaaataaggaagctgcctaaaaaAtttactatgcttctttccgAGttgagatatctcgatctttcatggacagatattgaagtcatccccaagtcagtctccaaattacagaatctgcaaactctggaagtatcacattgtaagaaactccggaaacttcatgagaatatgtgtcagcttgttcaactacggaagctaaaccttgaAggttgtcaccatcttgttgctttgcCtaggaacacgagtaaaatGaaaagccttgagtatcttaatgttattgattgctcatcacttactcaaatgccttgtaacatgggtcaacttacaaatcttcagactctgctgggGtatgttgtctgcaacagtggtgaaaAtatgttgtcagagttgcaatcattgccaaacctcaataagctaactcttgaaaaccttgagaaggttctggatctggaccttgtcgAtgcaagatatgcaaatctgcaaggcaaaagaaaccttgcgtcattgacattgaagtggaAtatggattctgaaaacaccaacaaaaAtgcttatgctgtacttgaaagtcttcaaccacaccagcGAttaaaagcattggaaattgttgcatatgaaggcaacaagtttccaacttggatgacaagcattgaaccctatctcacgtccctctcagagatcaggctagttaatctgaagttgctgcctcccttgggacagctaccatgcctaaagattgctgagattagtggagctgaaacagtcagctgtatcaaagatagtttctatggtcacaatgAAGGAAGCCTGAAAGGATTGGTGAAGGGCTTGGAACATGTTTCGATTTCTTTCTGCGATGAGCTGCTAGCTTCGTCAAGCTTGAAGGGTTTGCAGGATCTTGTTGAGCTCATTGAGTTGGATATAAGTGGATGTCATGAGTTGACCTGCCTCCCTTGGGGTTTGCAGCACCTTTCCTCTATTGAAAGCTTGACAATTGATAACTGCAGTAAAATAGAGACTTTACCAGATTGGTTGGAAAACCTACCTTCCCTGCGAGTTGTACGGCTTTCTGGTTGTTCTATGCTGGGCTCTATTCCCCAAGGCCTGAGATTAAGATGTATCGACATAATTGTTGAGCACTGCCCCAATTTTTCAGAACATTCATCAGGAAATTCTGTTGTGCATCAACAGCATAAGGGAAAAGAAATCGTTGAAGAATATGTATCTTCTCCAGTGTTTAGTGACAgagatgaagattaa

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Protein seq

MAGGELQMVMDMLNLARMEEQFQLLGMGTLLRHLRASANDISNNPSIRKGANMNLMFCIRSQSTHLCEVLEEVLHMQTRAGCWYQVPAFFFRACFVHSATVHELMKAVQDFVTLRDFVVKEHSNYAPRHLLYDSPTSIGMDIQTSARSRMVGRSELVEKMVKILLMDRVGHTDVSIPFVMPIVGAPGIGKTRLAQALFDDGRIKGKFHVQHWVHVSQQFNLRKILMRILNTWIEAEFSRKTAKILLHHALREVNYLLILDDVWYVNAGEWDTLMQALPSNGTIIFTSRIPAIASRMPTTKSYFLQPLEQEFLYSFVDEWNDAHRKQEYLNYFMGQRSDSHHVHGFSGFIEEVAMVIAKKCGGVPLLLEYACRLLQQSQNIQAWEGFMEVSGTIYPDEFWKQLLTYIDTLSEDSFWERFLQHFDGQPGGNIVSDSALVSYHHLPSELLSCLLYCALYPLDYDFDVEELGDHLVAPHFIPSTVTHTQRGGFLQQLLDEFFYPLEEEQGRKATYRMHKILHIYAQYMQRKVSAVIPVGQKAPTVQRFIRHASLIVHSSSASFPTCLNQLNNLKTLIVLQNRRSCLSDSRCEFKEIPQSFYQSFRNIRVLSLRANKIRKLPKKFTMLLSELRYLDLSWTDIEVIPKSVSKLQNLQTLEVSHCKKLRKLHENMCQLVQLRKLNLEGCHHLVALPRNTSKMKSLEYLNVIDCSSLTQMPCNMGQLTNLQTLLGYVVCNSGENMLSELQSLPNLNKLTLENLEKVLDLDLVDARYANLQGKRNLASLTLKWNMDSENTNKNAYAVLESLQPHQRLKALEIVAYEGNKFPTWMTSIEPYLTSLSEIRLVNLKLLPPLGQLPCLKIAEISGAETVSCIKDSFYGHNEGSLKGLVKGLEHVSISFCDELLASSSLKGLQDLVELIELDISGCHELTCLPWGLQHLSSIESLTIDNCSKIETLPDWLENLPSLRVVRLSGCSMLGSIPQGLRLRCIDIIVEHCPNFSEHSSGNSVVHQQHKGKEIVEEYVSSPVFSDRDED

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 2.210557 10.715961 3.752261

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0639100 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g42010 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os11g0639100 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0021580 SBH 0.0 1.526447 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0021510 RBH 0.285429 2.602148 1.937679
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0021400 RBH 2.290494 1.956714 5.089375
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0020890 SBH 0.0 0.045968 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0021400 SBH 0.0 2.192442 0.357784
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0380900 SBH 0.0056325 0.007946 0.017287
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0021960 SBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0400900 SBH 0.017636 0.021151 0.070134
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0021730 SBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0021870 SBH 0.160953 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0021520 SBH 1.393508 5.479032 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0021120 SBH 0.072209 0.0 0.433110
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0021240 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G021250 SBH 0.0 0.562846 0.281622
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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