Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0021730 | OGI:11072280 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:27509437-27510582 | ||||||||
| Gene Symbol | PIKH, Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh, - | ||||||||||
| DNA seq | ctagttcaattgctttaagaatagctcaatgaaaatcagaaacatggctttccatgaacagagcactgatgacatacctgatggttctttaaaattggggcaatattcaacaataatgtcgctacatgttaggccttcaggaatggagtgcagaattggacagccagacaaacacattatctgtagaaaaggtaggttctccaaccattctggcaaaatctccaatttgttgcagttatcaattttcaagctggcgagagaggaaagatgctgcaaaccctgtgggaggcatgacaattcatgacaaccacatatctccaacttcttgaggcgatcaagagcctgtagaccctcacagcctgaagaagcatgcaactctttacagaaagaaattgaaagattttcgaggctcttctctacacctctcagaccttccttcgagctgtacaacatcttattattcatccacaaaatcaatttttcaatcgatggaaactccatatgcagtgctctcaattttgggcactgaatgatgacaagttctgcaagacgaggaaacagattcatcctagatgactgttcccagacttcaaggcTAGtcatgaatgagagaatcagcttctccaatgaaggaaatgtaccgttctgaccatagaaattatcgtcaatacaactgatattctcaactcggcttatctccacttcctcgcAaaaaaaaaaaaaaactcgcttatctccacaatcttcagacatggcagtagcccaagtggaggtaaagcattttcacatcaaaatgactatgcatacgacttgtacatccgactcttgtacgaccatgactagctatgaaaaatctggacccacatagaagtaagctgagcaatgtgattagtcttgagacgtacgctagtagtacacatcggtcgtacgtatagcacttctcttttcacatgatctcagattaaccaaccttatctcaaccagagatgtgagatatggctcagtgcttgttatccaagatggaaatgcatgtccttcatacgcaacaatctccaaagttttcaggcactggttaggttggagggtttcaagtacttcatgatctattctactggcatttccagcatccatattccacctcaacat
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| CDS seq | atgttgaggtggaatatggatgctggaaatgccagtagaatagatcatgaagtacttgaaaccctccaacctaaccagtgcctgaaaactttggagattgttgcccttgaagtctgggaacagtcatctaggatgaatctgtttcctcgtcttgcagaacttgtcatcattcagtgcccaaaattgagagcactgcatatggagtttccatcgattgaaaaattgattttgtggatgaataataagatgttgtacagctcgaaggaaggtctgagaggtgtagagaagagcctcgaaaatctttcaatttctttctgtaaagagttgcatgcttcttcaggctgtgagggtctacaggctcttgatcgcctcaagaagttggagatatgtggttgtcatgaattgtcatgcctcccacagggtttgcagcatctttcctctctcgccagcttgaaaattgataactgcaacaaattggagattttgccagaatggttggagaacctaccttttctacagataatgtgtttgtctggctgtccaattctgcactccattcctgaaggcctaacatgtagcgacattattgttgaatattgccccaattttaaagaaccatcaggtatgtcatcagtgctctgttcatggaaagccatgtttctgattttcattgagctattcttaaagcaattgaactag
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| Protein seq | MLRWNMDAGNASRIDHEVLETLQPNQCLKTLEIVALEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGLRGVEKSLENLSISFCKELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLASLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEYCPNFKEPSGMSSVLCSWKAMFLIFIELFLKQLN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0021730 | OsLima_11g0021730.01 | Chr11 | 27509437 | 27510582 | - | NAM | ||
| CDS seq | atgttgaggtggaatatggatgctggaaatgccagtagaatagatcatgaagtacttgaaaccctccaacctaaccagtgcctgaaaactttggagattgttgcccttgaagtctgggaacagtcatctaggatgaatctgtttcctcgtcttgcagaacttgtcatcattcagtgcccaaaattgagagcactgcatatggagtttccatcgattgaaaaattgattttgtggatgaataataagatgttgtacagctcgaaggaaggtctgagaggtgtagagaagagcctcgaaaatctttcaatttctttctgtaaagagttgcatgcttcttcaggctgtgagggtctacaggctcttgatcgcctcaagaagttggagatatgtggttgtcatgaattgtcatgcctcccacagggtttgcagcatctttcctctctcgccagcttgaaaattgataactgcaacaaattggagattttgccagaatggttggagaacctaccttttctacagataatgtgtttgtctggctgtccaattctgcactccattcctgaaggcctaacatgtagcgacattattgttgaatattgccccaattttaaagaaccatcaggtatgtcatcagtgctctgttcatggaaagccatgtttctgattttcattgagctattcttaaagcaattgaactag
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| Protein seq | MLRWNMDAGNASRIDHEVLETLQPNQCLKTLEIVALEVWEQSSRMNLFPRLAELVIIQCPKLRALHMEFPSIEKLILWMNNKMLYSSKEGLRGVEKSLENLSISFCKELHASSGCEGLQALDRLKKLEICGCHELSCLPQGLQHLSSLASLKIDNCNKLEILPEWLENLPFLQIMCLSGCPILHSIPEGLTCSDIIVEYCPNFKEPSGMSSVLCSWKAMFLIFIELFLKQLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0640600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42010 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0640600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021520 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021500 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021390 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020830 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021400 | RBH | 0.0 | 2.192442 | 0.357784 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0380900 | RBH | 0.0056325 | 0.007946 | 0.017287 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021890 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0400900 | RBH | 0.017636 | 0.021151 | 0.070134 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021870 | SBH | 0.160953 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021520 | SBH | 1.393508 | 5.479032 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021120 | SBH | 0.072209 | 0.0 | 0.433110 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021250 | RBH | 0.0 | 0.562846 | 0.281622 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021760 | RBH | 0.0 | 0.000000 | 0.0 |
