Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_11g0018940 OGI:11065160 | 7/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr11:24305469-24310539
Gene Symbol XA39, Xa39
DNA seq

actcactccaaatcctgagtagtccatggcgactccacccacctgagcagaaagatCtcctccaCcaccagcagcagcagcagcatcagccaagagcagcaagaagccaagaaaaagagcttggctctccAattcttttgcaaggtcagctgcattcgaTtcaagtgtactcccccctctactttgcggttgcagtttgtaggtgaacacttttCtgtcctgagttgttaggcatctgcaaggacgtctgaaacatttggagaaaacacAacaattaatctgggtagactgtgtttttaTtgtGTAAAACTGGGAAGGAAACAAATACTACcagatctgaacaaactatgtaggaactggtcatctgatagttgtgtctgtcagaagattTGgggattaacggttactattgacttagctcaaagagcatataaatgtgtacaagataagagagaaatccataataccctcaatactcttatcagtgtctggtgagagttaaagttacagaggatgccAcaatcatcttctctttctgcatttgaatgaacatctgaaacagctatatacaattgaagaaatttgtgctttgttgtgactctatgagatcttgacgcgattcattcGgatcctgaattattgTtgttagtccttaacaaatactattgttgttacttacagatattgagtgagtttggctagcaaggatatagacctgactacctaataactgtattctgtcctctatttaatagCTTcagcaGtttcaacgattattgagtttcgctttctttcAaaactctgCctttatgtgtaaacatgcttcgccagctcttttgccaaaatttcccatccttcaatccttgactgctaacagatttcttatatgctttttcattccagcagtgcttctcaaaatggtttcatgtgtgaaccgaggcagctgtctggtggtgaacagcaccatataatcaTCACAATAAACAGAGAGGAGGGGGGTGGGCGTAGTAAACCATCAGGAATGGAGTTCGCCACAGGGGCAATGGGCACGCTCCTCCCCAAGCTGGTGGAGCTGCTCAAGGAACAATATGATCTGCAGAAGAGTGTGAAGGAGGGGATAACATTCCTCATAGCTGAGCTCAAGAGCATACAAGCAGCACTTGAGAAGGTCTCAAAGGTGCCGCTAGACCAACTTGACGAGCAAACCAAGATCTGGGCTTGGGACATTAGGGAGTTGTCTTATGACATTGAGGACAACATTGATACCTTCATGATATGTGTGGATGGTCTTGAGCCAGCCAAGAAACAGAATTTAACATGGTTAATTGACAAGTGCCACAAATCGTTGTCCAAGATAAAGATCCGACACAAAATAGCCAATGAAATCAAAGATATCAAGAGCCAAGTCAGGGAGGTGATGGAACGACGTGATAGGTACAAGATTGATGATGTCGCTACTATTCCTCCAACATTTGTGGATCCTCGCATCTTGACATTATATGAGAATGTCACCAAGCTTGTTGGGGTTGATAAGGCAAGTGATGATCTAATGAAGAGGTTGTCTGTGGGGGATGAGGCGCCCAAGAAGCTCAAGATGGTCTCTGTTGTTGGAATTGGAGGATTGGGCAAGACAACTCTTTCCAAAGTAGTGTTTGACAAGCTTAAACTGCAATTTGATTGTGCTGCTTTTGTTCCTGTCGGTCAAAACCCTGAAATCAAGAAAGTCCTGAAGGACATCCTAGTTGAACTTAACAAGGACAAGTACATGTCATTTGATGTAACAACAGTAAATGAAAGGCATATGATTAATGAGCTTCGAGAATACCTTGACAATAGGAGGgtaagtgtgtagtaccctccaatatttttgcttttcatgatgaacttattctcatggttgcaatagctgtagacctttatctgtattactggtatatataacTttttctatatttctttaataaaaaaagaatgaaaatgttgcAtagatcaggaaaacagaaaatgcaacgaattctaatgttaattgcagaacaggaaaaatatatttaactatctaactacattaatccactcgttgctagtgccagagaccaatttgatctaaaaccctttgattcaatagacTtaaataataagatgagaattatgtttgcacacaaatgtcttgggcactcatattgcttcagttttagaaatagtaattaaataatctctatttatatatcagtacagtttatcatttcactaatccatgacccttctattccatgggatagacttgattgttattgatgacgtatgggagacatcaaaatggaacattattaaatgtgcttgattgatagtaatcgtggaagtaagtatcataacaactcgtattatcaagttgctatgaagctgctgaagaatttggtggtgtttacatgatggaaccactttctgatgataactcaaaaaagttattctacaatagaatatttggtgttgcctgcagtagttcaactggtaatcaatcgttgaggcaaccaaaaagatcttacataatgtgtggctaccactatctaaattgcaatagctagtttgttgttgataaaccaacggagactggtctataatttatgactctataggttttgggactggagatcgaatgaggcggttcagaacacaaggaagatattgtcttttagctactatcacttaccctcatacctaaagacttgtatgttgtacctaaGCATATATCCAGAAGATCATTTGATTAAAAAGGATACTTTGATATGGAAGTGGGTAGCTGAAGGCTTTGTCCAAGAGGAACAAGATAAGGCATTATTTGAGGTCGGCGAGAGGTACTTTAGTGAGCTTATAAATAGAAGCATGATCCAGCCAATGGAGAATGATGGTAAGATTTCTGGCTGCCACATACATGACATGGTGTTAGATCTTATCCGAAACATAATAGCCGAAGAAAACTTTGTAAAAGTATTCGACAAACTACATGAGGTGCACAGGTTGTCTTCACAGAGGAGTACTGTCCGTAGGATAGCACTGCATGAGAGTTGGAACCAAGGCAAAAACAATGACCTTGCTGTTGGCATGACACAATTGAGGTCATTCAGTGCCATCAAGTGTACTATTAGCATGATGCCCTCGCTTCTGAGCTTCCAGGTTCTACGCGTGCTAGAGCTACAAGGCTGTAATGTCACAGGAGGTTTATACCTCAAGCATATCGGAAAGCTACGTCAGTTGAGGTACCTAGGAATGAGAGGCACACGTGTTGCTGAGCTTCCAGTGGAAATAGGGAATCTGATGCACCTGCAGACACTAGATGTCCGATACACAGGTCTGAAGGAACTGCCGTCGACCATTTGTAAGCTAAGCAAGCTGATGCGGCTGTGCGTCGCTGGAGGAACGGGCGTGCTGATGGGTGGTTGGAATCTGAGTTCACTGCAATACCTAAAGATGGGCTATGGTTGCATCAAAAGTAACAAAGACTTCGCCATAGAAGTGGGCAAGCTGATGGAGCTGAGAATCCTCAAGATTTATGTAGAGAACAAGTTTGACAAGGGCACGAAGAACGCTTTGCTACAGTCTCTGTGCTGCTTGCGTAGACTCCAGAACCTGATGATAGATTTCCCCTTGCCATTTCAGAATACGATGAGCATCTGGGATGGCTGGGACCTCTGGGAGCCCTCACCTCAGCTCCGTGTGTTCCGTATATGCGGCATTGAGCTGCCTCGGCTTCCAGAGTGGGTGAACTCCATGTGCGTCCCGTACCTATCCGAGCTGCGActtgacgtggtagccatggaagcacgggacctggacatgcttgcaaggatgccagcactccgcacactctgcctgagAacccaggcgagattttcgtggacagttggtggtgccggactgtttccgAacctgagattctgtaggatggacatagcactcacatttcttcaaggagccatgccgatgctcatgaagcttcaattatggctgtgggcgtctgaataTtgtgccgccactgacgttggattGgggcacctccctctgctcaatcgcgtcgaagttatcctccactgctgcgatgcgactaccaggcaGgtggaggaagcagaggcggcgtggaggcacatggTgaattctcacccgaaccgtcccgccattcgtgtgtcccgacttgaagaggtatggttggtttggttaatcatgattAatcaattggttagttcacattcccctacctacacgcacgcctccccacttctgattgccctccAAattctgtaaccaatcagctttacttgttctcaattgacgtatttcgttcctcagttcatatcgctctcgcactttgtttttcagtaccggatgaaaggagatgaagataatgatgatgaggagatttcagctaaggatcacgttgacggaaattgtgacgatGggaattcagcatatacggaccaagaggtgctgcgcttgcgcctgccatgcataactattcgatcctggttgcatgattaattacatgctcttggttactgaccggaggttaattagtcgcctgttctagccggacaatgatttagccaaagaggaggaggctacgaaccaatcttgaaccggatctcttcactcattcggtcatgctttcaggtacacatgtaccaaagttgcacatcaaaatcTtcatgacacattcttcaactttaatcatacgcttgtctctaacttttattcccggctgtaattaaacagcggcagctgcagggcaaggagaagaataaaagggagaaGaaactcatctccttcgctgggccTttttttttatttttttgttgctgttgGttttctttccctgttttttctcaagaaTttatatagtgtggtttgtaataatggttgtctcggttacaataaggcccaagtaggctcagacagaaattCcgagcatattggccgctaaactgtcatgtgtgatttttacactatgcttgtttctcatgatcacctgttttacttgattcAaaggttattggttggaacatggaagcatttgtttcag

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CDS seq

atgtgtgaaccgaggcagctgtctggtggtgaacagcaccatataatcaTCACAATAAACAGAGAGGAGGGGGGTGGGCGTAGTAAACCATCAGGAATGGAGTTCGCCACAGGGGCAATGGGCACGCTCCTCCCCAAGCTGGTGGAGCTGCTCAAGGAACAATATGATCTGCAGAAGAGTGTGAAGGAGGGGATAACATTCCTCATAGCTGAGCTCAAGAGCATACAAGCAGCACTTGAGAAGGTCTCAAAGGTGCCGCTAGACCAACTTGACGAGCAAACCAAGATCTGGGCTTGGGACATTAGGGAGTTGTCTTATGACATTGAGGACAACATTGATACCTTCATGATATGTGTGGATGGTCTTGAGCCAGCCAAGAAACAGAATTTAACATGGTTAATTGACAAGTGCCACAAATCGTTGTCCAAGATAAAGATCCGACACAAAATAGCCAATGAAATCAAAGATATCAAGAGCCAAGTCAGGGAGGTGATGGAACGACGTGATAGGTACAAGATTGATGATGTCGCTACTATTCCTCCAACATTTGTGGATCCTCGCATCTTGACATTATATGAGAATGTCACCAAGCTTGTTGGGGTTGATAAGGCAAGTGATGATCTAATGAAGAGGTTGTCTGTGGGGGATGAGGCGCCCAAGAAGCTCAAGATGGTCTCTGTTGTTGGAATTGGAGGATTGGGCAAGACAACTCTTTCCAAAGTAGTGTTTGACAAGCTTAAACTGCAATTTGATTGTGCTGCTTTTGTTCCTGTCGGTCAAAACCCTGAAATCAAGAAAGTCCTGAAGGACATCCTAGTTGAACTTAACAAGGACAAGTACATGTCATTTGATGTAACAACAGTAAATGAAAGGCATATGATTAATGAGCTTCGAGAATACCTTGACAATAGGAGGacttgtatgttgtacctaaGCATATATCCAGAAGATCATTTGATTAAAAAGGATACTTTGATATGGAAGTGGGTAGCTGAAGGCTTTGTCCAAGAGGAACAAGATAAGGCATTATTTGAGGTCGGCGAGAGGTACTTTAGTGAGCTTATAAATAGAAGCATGATCCAGCCAATGGAGAATGATGGTAAGATTTCTGGCTGCCACATACATGACATGGTGTTAGATCTTATCCGAAACATAATAGCCGAAGAAAACTTTGTAAAAGTATTCGACAAACTACATGAGGTGCACAGGTTGTCTTCACAGAGGAGTACTGTCCGTAGGATAGCACTGCATGAGAGTTGGAACCAAGGCAAAAACAATGACCTTGCTGTTGGCATGACACAATTGAGGTCATTCAGTGCCATCAAGTGTACTATTAGCATGATGCCCTCGCTTCTGAGCTTCCAGGTTCTACGCGTGCTAGAGCTACAAGGCTGTAATGTCACAGGAGGTTTATACCTCAAGCATATCGGAAAGCTACGTCAGTTGAGGTACCTAGGAATGAGAGGCACACGTGTTGCTGAGCTTCCAGTGGAAATAGGGAATCTGATGCACCTGCAGACACTAGATGTCCGATACACAGGTCTGAAGGAACTGCCGTCGACCATTTGTAAGCTAAGCAAGCTGATGCGGCTGTGCGTCGCTGGAGGAACGGGCGTGCTGATGGGTGGTTGGAATCTGAGTTCACTGCAATACCTAAAGATGGGCTATGGTTGCATCAAAAGTAACAAAGACTTCGCCATAGAAGTGGGCAAGCTGATGGAGCTGAGAATCCTCAAGATTTATGTAGAGAACAAGTTTGACAAGGGCACGAAGAACGCTTTGCTACAGTCTCTGTGCTGCTTGCGTAGACTCCAGAACCTGATGATAGATTTCCCCTTGCCATTTCAGAATACGATGAGCATCTGGGATGGCTGGGACCTCTGGGAGCCCTCACCTCAGCTCCGTGTGTTCCGTATATGCGGCATTGAGCTGCCTCGGCTTCCAGAGTGGGTGAACTCCATGTGCGTCCCGTACCTATCCGAGCTGCGActtgacgtggtagccatggaagcacgggacctggacatgcttgcaaggatgccagcactccgcacactctgcctgagAacccaggcgagattttcgtggacagttggtggtgccggactgtttccgAacctgagattctgtaggatggacatagcactcacatttcttcaaggagccatgccgatgctcatgaagcttcaattatggctgtgggcgtctgaataTtgtgccgccactgacgttggattGgggcacctccctctgctcaatcgcgtcgaagttatcctccactgctgcgatgcgactaccaggcaGgtggaggaagcagaggcggcgtggaggcacatggTgaattctcacccgaaccgtcccgccattcgtgtgtcccgacttgaagagtaccggatgaaaggagatgaagataatgatgatgaggagatttcagctaaggatcacgttgacggaaattgtgacgatGggaattcagcatatacggaccaagaggtgctgcgcttgcgcctgccatgcataactattcgatcctggttgcatgattaa

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Protein seq

MCEPRQLSGGEQHHIIITINREEGGGRSKPSGMEFATGAMGTLLPKLVELLKEQYDLQKSVKEGITFLIAELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDIEDNIDTFMICVDGLEPAKKQNLTWLIDKCHKSLSKIKIRHKIANEIKDIKSQVREVMERRDRYKIDDVATIPPTFVDPRILTLYENVTKLVGVDKASDDLMKRLSVGDEAPKKLKMVSVVGIGGLGKTTLSKVVFDKLKLQFDCAAFVPVGQNPEIKKVLKDILVELNKDKYMSFDVTTVNERHMINELREYLDNRRTCMLYLSIYPEDHLIKKDTLIWKWVAEGFVQEEQDKALFEVGERYFSELINRSMIQPMENDGKISGCHIHDMVLDLIRNIIAEENFVKVFDKLHEVHRLSSQRSTVRRIALHESWNQGKNNDLAVGMTQLRSFSAIKCTISMMPSLLSFQVLRVLELQGCNVTGGLYLKHIGKLRQLRYLGMRGTRVAELPVEIGNLMHLQTLDVRYTGLKELPSTICKLSKLMRLCVAGGTGVLMGGWNLSSLQYLKMGYGCIKSNKDFAIEVGKLMELRILKIYVENKFDKGTKNALLQSLCCLRRLQNLMIDFPLPFQNTMSIWDGWDLWEPSPQLRVFRICGIELPRLPEWVNSMCVPYLSELRLDVVAMEARDLDMLARMPALRTLCLRTQARFSWTVGGAGLFPNLRFCRMDIALTFLQGAMPMLMKLQLWLWASEYCAATDVGLGHLPLLNRVEVILHCCDATTRQVEEAEAAWRHMVNSHPNRPAIRVSRLEEYRMKGDEDNDDEEISAKDHVDGNCDDGNSAYTDQEVLRLRLPCITIRSWLHD

Function Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_11g0018940 OsNaBo_11g0018940.01 Chr11 24305469 24310504 + NAM
CDS seq

atgtgtgaaccgaggcagctgtctggtggtgaacagcaccatataatcaTCACAATAAACAGAGAGGAGGGGGGTGGGCGTAGTAAACCATCAGGAATGGAGTTCGCCACAGGGGCAATGGGCACGCTCCTCCCCAAGCTGGTGGAGCTGCTCAAGGAACAATATGATCTGCAGAAGAGTGTGAAGGAGGGGATAACATTCCTCATAGCTGAGCTCAAGAGCATACAAGCAGCACTTGAGAAGGTCTCAAAGGTGCCGCTAGACCAACTTGACGAGCAAACCAAGATCTGGGCTTGGGACATTAGGGAGTTGTCTTATGACATTGAGGACAACATTGATACCTTCATGATATGTGTGGATGGTCTTGAGCCAGCCAAGAAACAGAATTTAACATGGTTAATTGACAAGTGCCACAAATCGTTGTCCAAGATAAAGATCCGACACAAAATAGCCAATGAAATCAAAGATATCAAGAGCCAAGTCAGGGAGGTGATGGAACGACGTGATAGGTACAAGATTGATGATGTCGCTACTATTCCTCCAACATTTGTGGATCCTCGCATCTTGACATTATATGAGAATGTCACCAAGCTTGTTGGGGTTGATAAGGCAAGTGATGATCTAATGAAGAGGTTGTCTGTGGGGGATGAGGCGCCCAAGAAGCTCAAGATGGTCTCTGTTGTTGGAATTGGAGGATTGGGCAAGACAACTCTTTCCAAAGTAGTGTTTGACAAGCTTAAACTGCAATTTGATTGTGCTGCTTTTGTTCCTGTCGGTCAAAACCCTGAAATCAAGAAAGTCCTGAAGGACATCCTAGTTGAACTTAACAAGGACAAGTACATGTCATTTGATGTAACAACAGTAAATGAAAGGCATATGATTAATGAGCTTCGAGAATACCTTGACAATAGGAGGacttgtatgttgtacctaaGCATATATCCAGAAGATCATTTGATTAAAAAGGATACTTTGATATGGAAGTGGGTAGCTGAAGGCTTTGTCCAAGAGGAACAAGATAAGGCATTATTTGAGGTCGGCGAGAGGTACTTTAGTGAGCTTATAAATAGAAGCATGATCCAGCCAATGGAGAATGATGGTAAGATTTCTGGCTGCCACATACATGACATGGTGTTAGATCTTATCCGAAACATAATAGCCGAAGAAAACTTTGTAAAAGTATTCGACAAACTACATGAGGTGCACAGGTTGTCTTCACAGAGGAGTACTGTCCGTAGGATAGCACTGCATGAGAGTTGGAACCAAGGCAAAAACAATGACCTTGCTGTTGGCATGACACAATTGAGGTCATTCAGTGCCATCAAGTGTACTATTAGCATGATGCCCTCGCTTCTGAGCTTCCAGGTTCTACGCGTGCTAGAGCTACAAGGCTGTAATGTCACAGGAGGTTTATACCTCAAGCATATCGGAAAGCTACGTCAGTTGAGGTACCTAGGAATGAGAGGCACACGTGTTGCTGAGCTTCCAGTGGAAATAGGGAATCTGATGCACCTGCAGACACTAGATGTCCGATACACAGGTCTGAAGGAACTGCCGTCGACCATTTGTAAGCTAAGCAAGCTGATGCGGCTGTGCGTCGCTGGAGGAACGGGCGTGCTGATGGGTGGTTGGAATCTGAGTTCACTGCAATACCTAAAGATGGGCTATGGTTGCATCAAAAGTAACAAAGACTTCGCCATAGAAGTGGGCAAGCTGATGGAGCTGAGAATCCTCAAGATTTATGTAGAGAACAAGTTTGACAAGGGCACGAAGAACGCTTTGCTACAGTCTCTGTGCTGCTTGCGTAGACTCCAGAACCTGATGATAGATTTCCCCTTGCCATTTCAGAATACGATGAGCATCTGGGATGGCTGGGACCTCTGGGAGCCCTCACCTCAGCTCCGTGTGTTCCGTATATGCGGCATTGAGCTGCCTCGGCTTCCAGAGTGGGTGAACTCCATGTGCGTCCCGTACCTATCCGAGCTGCGActtgacgtggtagccatggaagcacgggacctggacatgcttgcaaggatgccagcactccgcacactctgcctgagAacccaggcgagattttcgtggacagttggtggtgccggactgtttccgAacctgagattctgtaggatggacatagcactcacatttcttcaaggagccatgccgatgctcatgaagcttcaattatggctgtgggcgtctgaataTtgtgccgccactgacgttggattGgggcacctccctctgctcaatcgcgtcgaagttatcctccactgctgcgatgcgactaccaggcaGgtggaggaagcagaggcggcgtggaggcacatggTgaattctcacccgaaccgtcccgccattcgtgtgtcccgacttgaagagtaccggatgaaaggagatgaagataatgatgatgaggagatttcagctaaggatcacgttgacggaaattgtgacgatGggaattcagcatatacggaccaagagccggacaatgatttagccaaagaggaggaggctacgaaccaatcttga

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Protein seq

MCEPRQLSGGEQHHIIITINREEGGGRSKPSGMEFATGAMGTLLPKLVELLKEQYDLQKSVKEGITFLIAELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDIEDNIDTFMICVDGLEPAKKQNLTWLIDKCHKSLSKIKIRHKIANEIKDIKSQVREVMERRDRYKIDDVATIPPTFVDPRILTLYENVTKLVGVDKASDDLMKRLSVGDEAPKKLKMVSVVGIGGLGKTTLSKVVFDKLKLQFDCAAFVPVGQNPEIKKVLKDILVELNKDKYMSFDVTTVNERHMINELREYLDNRRTCMLYLSIYPEDHLIKKDTLIWKWVAEGFVQEEQDKALFEVGERYFSELINRSMIQPMENDGKISGCHIHDMVLDLIRNIIAEENFVKVFDKLHEVHRLSSQRSTVRRIALHESWNQGKNNDLAVGMTQLRSFSAIKCTISMMPSLLSFQVLRVLELQGCNVTGGLYLKHIGKLRQLRYLGMRGTRVAELPVEIGNLMHLQTLDVRYTGLKELPSTICKLSKLMRLCVAGGTGVLMGGWNLSSLQYLKMGYGCIKSNKDFAIEVGKLMELRILKIYVENKFDKGTKNALLQSLCCLRRLQNLMIDFPLPFQNTMSIWDGWDLWEPSPQLRVFRICGIELPRLPEWVNSMCVPYLSELRLDVVAMEARDLDMLARMPALRTLCLRTQARFSWTVGGAGLFPNLRFCRMDIALTFLQGAMPMLMKLQLWLWASEYCAATDVGLGHLPLLNRVEVILHCCDATTRQVEEAEAAWRHMVNSHPNRPAIRVSRLEEYRMKGDEDNDDEEISAKDHVDGNCDDGNSAYTDQEPDNDLAKEEEATNQS

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_11g0018940 OsNaBo_11g0018940.02 Chr11 24305482 24310524 + NAM
CDS seq

atgtgtgaaccgaggcagctgtctggtggtgaacagcaccatataatcaTCACAATAAACAGAGAGGAGGGGGGTGGGCGTAGTAAACCATCAGGAATGGAGTTCGCCACAGGGGCAATGGGCACGCTCCTCCCCAAGCTGGTGGAGCTGCTCAAGGAACAATATGATCTGCAGAAGAGTGTGAAGGAGGGGATAACATTCCTCATAGCTGAGCTCAAGAGCATACAAGCAGCACTTGAGAAGGTCTCAAAGGTGCCGCTAGACCAACTTGACGAGCAAACCAAGATCTGGGCTTGGGACATTAGGGAGTTGTCTTATGACATTGAGGACAACATTGATACCTTCATGATATGTGTGGATGGTCTTGAGCCAGCCAAGAAACAGAATTTAACATGGTTAATTGACAAGTGCCACAAATCGTTGTCCAAGATAAAGATCCGACACAAAATAGCCAATGAAATCAAAGATATCAAGAGCCAAGTCAGGGAGGTGATGGAACGACGTGATAGGTACAAGATTGATGATGTCGCTACTATTCCTCCAACATTTGTGGATCCTCGCATCTTGACATTATATGAGAATGTCACCAAGCTTGTTGGGGTTGATAAGGCAAGTGATGATCTAATGAAGAGGTTGTCTGTGGGGGATGAGGCGCCCAAGAAGCTCAAGATGGTCTCTGTTGTTGGAATTGGAGGATTGGGCAAGACAACTCTTTCCAAAGTAGTGTTTGACAAGCTTAAACTGCAATTTGATTGTGCTGCTTTTGTTCCTGTCGGTCAAAACCCTGAAATCAAGAAAGTCCTGAAGGACATCCTAGTTGAACTTAACAAGGACAAGTACATGTCATTTGATGTAACAACAGTAAATGAAAGGCATATGATTAATGAGCTTCGAGAATACCTTGACAATAGGAGGacttgtatgttgtacctaaGCATATATCCAGAAGATCATTTGATTAAAAAGGATACTTTGATATGGAAGTGGGTAGCTGAAGGCTTTGTCCAAGAGGAACAAGATAAGGCATTATTTGAGGTCGGCGAGAGGTACTTTAGTGAGCTTATAAATAGAAGCATGATCCAGCCAATGGAGAATGATGGTAAGATTTCTGGCTGCCACATACATGACATGGTGTTAGATCTTATCCGAAACATAATAGCCGAAGAAAACTTTGTAAAAGTATTCGACAAACTACATGAGGTGCACAGGTTGTCTTCACAGAGGAGTACTGTCCGTAGGATAGCACTGCATGAGAGTTGGAACCAAGGCAAAAACAATGACCTTGCTGTTGGCATGACACAATTGAGGTCATTCAGTGCCATCAAGTGTACTATTAGCATGATGCCCTCGCTTCTGAGCTTCCAGGTTCTACGCGTGCTAGAGCTACAAGGCTGTAATGTCACAGGAGGTTTATACCTCAAGCATATCGGAAAGCTACGTCAGTTGAGGTACCTAGGAATGAGAGGCACACGTGTTGCTGAGCTTCCAGTGGAAATAGGGAATCTGATGCACCTGCAGACACTAGATGTCCGATACACAGGTCTGAAGGAACTGCCGTCGACCATTTGTAAGCTAAGCAAGCTGATGCGGCTGTGCGTCGCTGGAGGAACGGGCGTGCTGATGGGTGGTTGGAATCTGAGTTCACTGCAATACCTAAAGATGGGCTATGGTTGCATCAAAAGTAACAAAGACTTCGCCATAGAAGTGGGCAAGCTGATGGAGCTGAGAATCCTCAAGATTTATGTAGAGAACAAGTTTGACAAGGGCACGAAGAACGCTTTGCTACAGTCTCTGTGCTGCTTGCGTAGACTCCAGAACCTGATGATAGATTTCCCCTTGCCATTTCAGAATACGATGAGCATCTGGGATGGCTGGGACCTCTGGGAGCCCTCACCTCAGCTCCGTGTGTTCCGTATATGCGGCATTGAGCTGCCTCGGCTTCCAGAGTGGGTGAACTCCATGTGCGTCCCGTACCTATCCGAGCTGCGActtgacgtggtagccatggaagcacgggacctggacatgcttgcaaggatgccagcactccgcacactctgcctgagAacccaggcgagattttcgtggacagttggtggtgccggactgtttccgAacctgagattctgtaggatggacatagcactcacatttcttcaaggagccatgccgatgctcatgaagcttcaattatggctgtgggcgtctgaataTtgtgccgccactgacgttggattGgggcacctccctctgctcaatcgcgtcgaagttatcctccactgctgcgatgcgactaccaggcaGgtggaggaagcagaggcggcgtggaggcacatggTgaattctcacccgaaccgtcccgccattcgtgtgtcccgacttgaagagtaccggatgaaaggagatgaagataatgatgatgaggagatttcagctaaggatcacgttgacggaaattgtgacgatGggaattcagcatatacggaccaagaggtgctgcgcttgcgcctgccatgcataactattcgatcctggttgcatgattaa

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Protein seq

MCEPRQLSGGEQHHIIITINREEGGGRSKPSGMEFATGAMGTLLPKLVELLKEQYDLQKSVKEGITFLIAELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDIEDNIDTFMICVDGLEPAKKQNLTWLIDKCHKSLSKIKIRHKIANEIKDIKSQVREVMERRDRYKIDDVATIPPTFVDPRILTLYENVTKLVGVDKASDDLMKRLSVGDEAPKKLKMVSVVGIGGLGKTTLSKVVFDKLKLQFDCAAFVPVGQNPEIKKVLKDILVELNKDKYMSFDVTTVNERHMINELREYLDNRRTCMLYLSIYPEDHLIKKDTLIWKWVAEGFVQEEQDKALFEVGERYFSELINRSMIQPMENDGKISGCHIHDMVLDLIRNIIAEENFVKVFDKLHEVHRLSSQRSTVRRIALHESWNQGKNNDLAVGMTQLRSFSAIKCTISMMPSLLSFQVLRVLELQGCNVTGGLYLKHIGKLRQLRYLGMRGTRVAELPVEIGNLMHLQTLDVRYTGLKELPSTICKLSKLMRLCVAGGTGVLMGGWNLSSLQYLKMGYGCIKSNKDFAIEVGKLMELRILKIYVENKFDKGTKNALLQSLCCLRRLQNLMIDFPLPFQNTMSIWDGWDLWEPSPQLRVFRICGIELPRLPEWVNSMCVPYLSELRLDVVAMEARDLDMLARMPALRTLCLRTQARFSWTVGGAGLFPNLRFCRMDIALTFLQGAMPMLMKLQLWLWASEYCAATDVGLGHLPLLNRVEVILHCCDATTRQVEEAEAAWRHMVNSHPNRPAIRVSRLEEYRMKGDEDNDDEEISAKDHVDGNCDDGNSAYTDQEVLRLRLPCITIRSWLHD

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_11g0018940 OsNaBo_11g0018940.03 Chr11 24305469 24310539 + IsoSeq
CDS seq

atgttgtacctaaGCATATATCCAGAAGATCATTTGATTAAAAAGGATACTTTGATATGGAAGTGGGTAGCTGAAGGCTTTGTCCAAGAGGAACAAGATAAGGCATTATTTGAGGTCGGCGAGAGGTACTTTAGTGAGCTTATAAATAGAAGCATGATCCAGCCAATGGAGAATGATGGTAAGATTTCTGGCTGCCACATACATGACATGGTGTTAGATCTTATCCGAAACATAATAGCCGAAGAAAACTTTGTAAAAGTATTCGACAAACTACATGAGGTGCACAGGTTGTCTTCACAGAGGAGTACTGTCCGTAGGATAGCACTGCATGAGAGTTGGAACCAAGGCAAAAACAATGACCTTGCTGTTGGCATGACACAATTGAGGTCATTCAGTGCCATCAAGTGTACTATTAGCATGATGCCCTCGCTTCTGAGCTTCCAGGTTCTACGCGTGCTAGAGCTACAAGGCTGTAATGTCACAGGAGGTTTATACCTCAAGCATATCGGAAAGCTACGTCAGTTGAGGTACCTAGGAATGAGAGGCACACGTGTTGCTGAGCTTCCAGTGGAAATAGGGAATCTGATGCACCTGCAGACACTAGATGTCCGATACACAGGTCTGAAGGAACTGCCGTCGACCATTTGTAAGCTAAGCAAGCTGATGCGGCTGTGCGTCGCTGGAGGAACGGGCGTGCTGATGGGTGGTTGGAATCTGAGTTCACTGCAATACCTAAAGATGGGCTATGGTTGCATCAAAAGTAACAAAGACTTCGCCATAGAAGTGGGCAAGCTGATGGAGCTGAGAATCCTCAAGATTTATGTAGAGAACAAGTTTGACAAGGGCACGAAGAACGCTTTGCTACAGTCTCTGTGCTGCTTGCGTAGACTCCAGAACCTGATGATAGATTTCCCCTTGCCATTTCAGAATACGATGAGCATCTGGGATGGCTGGGACCTCTGGGAGCCCTCACCTCAGCTCCGTGTGTTCCGTATATGCGGCATTGAGCTGCCTCGGCTTCCAGAGTGGGTGAACTCCATGTGCGTCCCGTACCTATCCGAGCTGCGActtgacgtggtagccatggaagcacgggacctggacatgcttgcaaggatgccagcactccgcacactctgcctgagAacccaggcgagattttcgtggacagttggtggtgccggactgtttccgAacctgagattctgtaggatggacatagcactcacatttcttcaaggagccatgccgatgctcatgaagcttcaattatggctgtgggcgtctgaataTtgtgccgccactgacgttggattGgggcacctccctctgctcaatcgcgtcgaagttatcctccactgctgcgatgcgactaccaggcaGgtggaggaagcagaggcggcgtggaggcacatggTgaattctcacccgaaccgtcccgccattcgtgtgtcccgacttgaagagtaccggatgaaaggagatgaagataatgatgatgaggagatttcagctaaggatcacgttgacggaaattgtgacgatGggaattcagcatatacggaccaagagtcgcctgttctagccgga

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Protein seq

MLYLSIYPEDHLIKKDTLIWKWVAEGFVQEEQDKALFEVGERYFSELINRSMIQPMENDGKISGCHIHDMVLDLIRNIIAEENFVKVFDKLHEVHRLSSQRSTVRRIALHESWNQGKNNDLAVGMTQLRSFSAIKCTISMMPSLLSFQVLRVLELQGCNVTGGLYLKHIGKLRQLRYLGMRGTRVAELPVEIGNLMHLQTLDVRYTGLKELPSTICKLSKLMRLCVAGGTGVLMGGWNLSSLQYLKMGYGCIKSNKDFAIEVGKLMELRILKIYVENKFDKGTKNALLQSLCCLRRLQNLMIDFPLPFQNTMSIWDGWDLWEPSPQLRVFRICGIELPRLPEWVNSMCVPYLSELRLDVVAMEARDLDMLARMPALRTLCLRTQARFSWTVGGAGLFPNLRFCRMDIALTFLQGAMPMLMKLQLWLWASEYCAATDVGLGHLPLLNRVEVILHCCDATTRQVEEAEAAWRHMVNSHPNRPAIRVSRLEEYRMKGDEDNDDEEISAKDHVDGNCDDGNSAYTDQESPVLAG

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr11 24307308 24308190 + OsNaBo_11g0018940.03 OsNaBo_11g0018940.03,OsNaBo_11g0018940.02,OsNaBo_11g0018940.01 All
A3 Chr11 24309944 24310048 + OsNaBo_11g0018940.03 OsNaBo_11g0018940.03,OsNaBo_11g0018940.01 All
A3 Chr11 24305612 24306375 + OsNaBo_11g0018940.02 OsNaBo_11g0018940.03,OsNaBo_11g0018940.01,OsNaBo_11g0018940.02 All
RI Chr11 24309840 24310130 + OsNaBo_11g0018940.02 OsNaBo_11g0018940.01,OsNaBo_11g0018940.02 All
RI Chr11 24309840 24310130 + OsNaBo_11g0018940.02 OsNaBo_11g0018940.03,OsNaBo_11g0018940.02 All

Expression

Leaf Root Panicle
FPKM 3.442129 14.221926 11.080817

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0588600 SBH 7.568878 7.147371 7.533903
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g37759 RBH 4.759823 3.824884 1.701320
Nipponbare | IRGSP 1.0 | RAP-db Os11g0588600 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0018720 RBH 1.563838 3.608141 4.240610
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0018890 SBH 0.083474 0.000000 0.872841
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0018670 SBH 0.0 0.000000 2.007686
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0018340 RBH 0.802623 0.274251 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0018700 SBH 1.567390 3.916554 13.040835
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0344600 SBH 0.028829 0.8824205 0.0846545
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0019230 SBH 0.065155 0.275563 1.610033
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0356800 SBH 1.8868395 5.834602 6.9888025
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0019020 SBH 0.831603 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0019180 RBH 0.855369 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0018680 RBH 22.926207 17.584740 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0018470 SBH 0.619366 0.0 0.136617
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0018560 SBH 0.187229 1.704459 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G018730 SBH 0.222103 2.844661 3.268044
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0018960 RBH 0.407940 8.649183 0.900061
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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