Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0018390 | OGI:11063750 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:23759380-23764317 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacaagcatacctttgtatcaagctcaatagaagccatattctcttgtgtgcaactccgtttgagaacaacggctctaataagcaaatcctgagagaatttaaataaaattaaaccAaacacaaatttgatgattaccttgaagattaataaaatattggttgtcagcaaaagaacttccaggctctgctaaccttgaatgttagcactacttgaaatcgctgatcaaactttgccacctgatcaacaaactttattttgctggactccgtaactttctttttatatatgctcaccagcattattcttttcctaactagaggtgcaaagacaagatacaagtagaagaacagcaaaagttatcataccaacatgcttctttatttcgtcttgcttccttttctcatgcagcatctcctcctggaaatatggcaataaaaatatgagcgctataagaaatggacattaattatatccatatctagttctgtgaatagaatttaaacctatgaaacatttatcctgtgaaattttgctgcttcatcttctaattgactcggtgtcgtcaatagcatctttaaggcttcacctgtaccttcaatgtctttcatgtgcttttgtttttgagatcgaagcctttcgatgtcaccactcaccaacatctaaatctgcaccagtaagctgataagcattaggcaccagcagatcagaatgcacaaaccgagtagctaacaagcattaaggttgagactggcacacatactgcccataaaaaaaGgggatggatcacatcatctacaaatgctgataaatggccactatatcttgatctagaccaccggtagtggttatttggggttcAaaagtcagacatgcctaacttaggtacatcatctgctctgttatgtgtttcatctgttcctatatactatatagacataagaaaaaaaaaaggagaaacgggagagaacacacaattgaggattcaggcgttatccaatgcagcttgatatagatttatgaagtggacataagcagtcataccgaatgatcgaaattagcgcgactaattaaaacatctttcacggcaggaggagcttcaaaaacttgatcaagtcgtgagtagatgccaacttcctgcatctgcaaaaaaaataacaatactaaataatttatcttaccattcttttacatatggcatgttttgtggagtaagagggaacagaggctgagaaagctttaagattgatgaagccaccagaagagaacggctgtagggtccttcaaatgaatatttaggaaaaacAatagatgatacgtcgtgtaatctagcatcaaatctgaacgcggaacttacaatggcagttaatttgacaaataataggaataggaacaactaggaaattaatgcggaacaaaaaaaatagggcacattgaaaaggagtaacaaatgacaaatatcgatgctctcaaatggtaaatgcccttctttttagactaaattgcttaggcaatgcctgctgacctccatcctgagtaacaaatgactgacatataaaacaaaatggcagttaatttgtttacagatgtaatattttccataggaggAaaaaaaatcagatcgtggtggttcatggtttccaagtcaatgacgacaacaaacaagggactttgttctagaaatagttcacatagatgccatcctactggaaaacaaccatgtcctgtaactggaggataaatttcccctttacatatcttgactatgagcaaGaaaaagaaaacacaacatgcattggcacaacagaaacagcaggcactggtagaatgtgttgtcctggctttccatattttcattgaaatgtcaaaatcaagtaaggcataagtaagcatcacaaaatactatcataatatttgtaccttccatatatagtttgggagatggccttccaagtatgaagcgtgagccttatcctgaatatttacctgagaatagtacaaagaacaagacaatggttgtacttgtatcatatgcaaagcaaacaatggtagacaaacatgcatgtaaacaaacctcaaggagaacaggtccgtaaacttcagtcctgaacttgtatctgttatcttgcacccagttgtatgcttctttgattttttttttcagcaccacaacatctcactctttggagaatcttatagtttccatttgcttcaatctgtgataaagcaacatgtagccgagtcttggatgaaatagaaattaataggcaaaacaggttacctatcagagcacttcctcagaTtctctctctctcTtcttttttttttagccgggacagcgaagaatgccgaccgatgtatattaaggaaaagggAaaaactgtacaaatgcaatgcatcaaagcaccgccattacaacaaaaagcaaattacaaagtctgtaatctctctaaagctggcgctgtagcaacattcaacgaggtaactagccctgctgatttccaagtttcccattcatcacacatggtcgcacacagctgcgtgaccgacgaggccgttccctcgaaaacccgtgcgtttcgctctttccaaatcaaccatgtaacgaggatgaccccggcatcgaacgtcttgcgattgatcttcgcaacagtttgccgggcagcgagccaccaaccggcaaagtccgaggacggcggcgagcaagagaggctcaaacgagcctgaacctgcacccaaacttgctgcgagaaggtgcaggcttggaagatgtgttggcaggactctccatccttagaacaaaggtgacaaattggtgcgagcttccagcctcggcgctgcaggttatcagctgttaaacaggcattgcggaccgcaaggaacatgaagaacttgcatctcgctggcgcgcgggatttccagataatcttgccaagtgggcaggatgttctaccagctgaaaggatagagtaggcagaccgcaccgagaagtcgccgttaggtgccaccttccagatcatagagtcagtacttccggggtcGAgagaaatcccggcgatcacgtcccagagcgcaaggtattcccccatcgcttggacagacaggccgcccctaatatctgcaatccaggagttgtcgcagagagcggcagccaccgtgatgtcactcagcttgacgaaggagaaaagaattgggaatctgtactgcactgatcctccgtctggcaaccagttgtcgcaccAaaacgaggtagaggctccgttccccagtagtactttgctaccagcggcaaagcagtgcagcgactttctgtcagctagaggtgcaacacgcgtccaaggacgctctggctcagcgcggcgcaaccaaatccaccgagtgcgaagcgcaattcccattaggcgtaggtttctgatccctatcccccctgctcgacagagaggcaaagcttctcccaagccaccaagctgcaagagcccgcatcatcttcatcacccttccaaaggaaaccccggcatttcttctcaatttcgttgatcgcccaggctagtagttccaagacggacatgaagtagagtGggagcgccattaacacatgcttgatcagggctagatgggcatctggagataaaagcttgggcttccaaccagccaaatttttggcaagcctatccatcatcagttagatttgcactttcgtcggtttacgcatagaaagaggcagccctaggtaaacaatcggcaattgcttgatcgggcatgtcaacacctctgtgacctcttcgatttgaacaacagtgcaatggatcggggtcaatgagctcttggctaggtttggaaccaagccgatggcgtcacccatcaacttgagtatgaagtggattgtcagcgcgtcccgccgagaaggatggaagaagatgatggcatcatctgcatagattgaggcgcgaagtggcaaggaacccgtagcaagtggggaaagcacgccacggctcgctgccgtggagcatagccgcaaatgcctccatcacaatgacgaaaagcaacggcgagagtggatccccttgcctgagtccccgagctagcttgatcctttgagtgtctctaccattgatggtgacggtggttgacgaagtgaaaagcaaagctgaaacacagtcacgccatcgagcaccgaagcccaaatgtcgaagcagctccaaaaggaattcccaagataccgtatcaaaagcttttgcgatgtcaatcttcaacagcatggcaggcgttttggaccgatgcaacttcttaactacaccatgaacgtagaggaagttctcttgtattcttctacgcctaatgaaggccgactgtgcaggcccgatcaattcatccattctcggggcgagacggagtgctagacggagttcaacagagcactatcaattGCACGACCATTAAATCCTGCCACCCATAACATTTCATATGGAGTATCCCTACCTGAAAAAGCCTCTAGCCTCTaagagcaaagaatcactgcagcaagagaaaggctccaacgagcaatcgatataaacaacaatgcttgttgtgaagttgatgtggagagtgttctcagcattgcaaagagctcaggaatcgcgtatgcggtgcatagggctgcagctgttgcaaccacattccctaagtcagctcgtgtgcaatttctgccagtctatgtggcactggaccttgccaagagtattgaaccagatgctgataaggaggaggtcctacaatgtgccctgaaaatcatggacagtgctgcaaaaatatcagatcactctcttgtgatcgcactgtttcgtgcaggactgatggctgtcctccatgattatgctgcagctgaggatgagtgttgtcgagcccttgccattgagaaggctgacgatccaagcagtcacgacatccctgtagggt
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| CDS seq | atggaggacagccatcagtcctgcacgaaacaaaagtcgctgcactgctttgccgctggtagcaaagtactactggggaacggagcctctacctcgtttTggtgcgacaactggttgccagacggaggatcagtgcagtacagattcccaattcttttctccttcgtcaagctgagtgacatcacggtggctgccgctctctgcgacaactcctggattgcagatattaggggcggcctgtctgtccaagcgatgggggaataccttgcgctctgggacgtgatcgccgggatttctcTCgaccccggaagtactgactctatgatctggaaggttcaggctcgtttgagcctctcttgctcgccgccgtcctcggactttgccggttggtggctcgctgcccggcaaactgttgcgaagatcaatcgcaagacgttcgatgccggggtcatcctcgttacatggttgatttggaaagagcgaaacgcacgggttttcgagggaacggcctcgtcggtcacgcagctgtgtgcgaccatgtgtgatgaatgggaaacttggaaatcagcagggctaatgcaggaagttggcatctactcacgacttgatcaagtttttgaagctcctcctgccgtgaaagatgaggagatgctgcatgagaaaaggaagcaagacgaaataaagaagcatgatttgcttattagagccgttgttctcaaacggagttgcacacaagagaatatggcttctattgagcttgatacaaaggtatgcttgtga
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| Protein seq | MEDSHQSCTKQKSLHCFAAGSKVLLGNGASTSFWCDNWLPDGGSVQYRFPILFSFVKLSDITVAAALCDNSWIADIRGGLSVQAMGEYLALWDVIAGISLDPGSTDSMIWKVQARLSLSCSPPSSDFAGWWLAARQTVAKINRKTFDAGVILVTWLIWKERNARVFEGTASSVTQLCATMCDEWETWKSAGLMQEVGIYSRLDQVFEAPPAVKDEEMLHEKRKQDEIKKHDLLIRAVVLKRSCTQENMASIELDTKVCL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0018390 | OsNaBo_11g0018390.01 | Chr11 | 23759380 | 23764317 | - | NAM | ||
| CDS seq | atggaggacagccatcagtcctgcacgaaacaaaagtcgctgcactgctttgccgctggtagcaaagtactactggggaacggagcctctacctcgtttTggtgcgacaactggttgccagacggaggatcagtgcagtacagattcccaattcttttctccttcgtcaagctgagtgacatcacggtggctgccgctctctgcgacaactcctggattgcagatattaggggcggcctgtctgtccaagcgatgggggaataccttgcgctctgggacgtgatcgccgggatttctcTCgaccccggaagtactgactctatgatctggaaggttcaggctcgtttgagcctctcttgctcgccgccgtcctcggactttgccggttggtggctcgctgcccggcaaactgttgcgaagatcaatcgcaagacgttcgatgccggggtcatcctcgttacatggttgatttggaaagagcgaaacgcacgggttttcgagggaacggcctcgtcggtcacgcagctgtgtgcgaccatgtgtgatgaatgggaaacttggaaatcagcagggctaatgcaggaagttggcatctactcacgacttgatcaagtttttgaagctcctcctgccgtgaaagatgaggagatgctgcatgagaaaaggaagcaagacgaaataaagaagcatgatttgcttattagagccgttgttctcaaacggagttgcacacaagagaatatggcttctattgagcttgatacaaaggtatgcttgtga
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| Protein seq | MEDSHQSCTKQKSLHCFAAGSKVLLGNGASTSFWCDNWLPDGGSVQYRFPILFSFVKLSDITVAAALCDNSWIADIRGGLSVQAMGEYLALWDVIAGISLDPGSTDSMIWKVQARLSLSCSPPSSDFAGWWLAARQTVAKINRKTFDAGVILVTWLIWKERNARVFEGTASSVTQLCATMCDEWETWKSAGLMQEVGIYSRLDQVFEAPPAVKDEEMLHEKRKQDEIKKHDLLIRAVVLKRSCTQENMASIELDTKVCL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0672600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36880 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0672600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018140 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023200 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023420 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017610 | SBH | 0.000000 | 0.123532 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022800 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0358600 | RBH | 0.1039835 | 0.501904 | 0.8764025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020310 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0373700 | RBH | 0.160736 | 0.756672 | 6.280971 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0018460 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023430 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018090 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0035860 | SBH | 0.0 | 0.000000 | 0.646517 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017910 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018100 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0035830 | RBH | 0.0 | 0.0 | 0.000000 |
