Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_11g0020310 | OGI:11063750 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr11:25644950-25645483 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGATTTCTCCGTCAAATCAGTGTATTCGCTGCGCTGTGCTCGGTGAACAAAGTGCGCCTTGGGCAGAATTGTGTGGAAATCCAGGGTGCCAGCACGTTGTAAATTCTTCATGTTCCTCGTGATACGAGGAGCTTGTCTTACTGCCGACAACTTGCAGCGTTGCAGGTGGCATTTGGCGAGCTTGTCACCTTTGCTGCTGCGATCTGGAAACCTGCTTGCCCATCTTCCACTGCTGCGCATGCACGGTGCAGGTCTGGGAGCGGGTGCACAGCCGCCTGGGCTTCATTTGCCCACAGCCTACACCGCATTTGCCTTCCTGGTGGCTCGCGGTCCGCAAGATGATCAACAAGCAGGAGAGGAGAACCTTCGATGCAGGTGTGATCCTGGTGACATGGCTTATCTGGAAGGAACACAATGCCCGTGTTTTTGAGGGGAAGGACACTATGGTGTTTGCTCTATGTGGAAGGTGGCTGGCCTATTTACACCGCCTGACACCGGGGCATATCAAGGCATTGAGGGTTCTGATGTGA
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| CDS seq | ATGGCGATTTCTCCGTCAAATCAGTGTATTCGCTGCGCTGTGCTCGGTGAACAAAGTGCGCCTTGGGCAGAATTGTGTGGAAATCCAGGGTGCCAGCACGTTGAGCTTGTCTTACTGCCGACAACTTGCAGCGTTGCAGGTGGCATTTGGCGAGCTTGTCACCTTTGCTGCTGCGATCTGGAAACCTGCTTGCCCATCTTCCACTGCTGCGCATGCACGGTGCAGGTCTGGGAGCGGGTGCACAGCCGCCTGGGCTTCATTTGCCCACAGCCTACACCGCATTTGCCTTCCTGGTGGCTCGCGGTCCGCAAGATGATCAACAAGCAGGAGAGGAGAACCTTCGATGCAGGTGTGATCCTGGTGACATGGCTTATCTGGAAGGAACACAATGCCCGTGTTTTTGAGGGGAAGGACACTATGGTGTTTGCTCTATGTGGAAGGTGGCTGGCCTATTTACACCGCCTGACACCGGGGCATATCAAGGCATTGAGGGTTCTGATGTGA
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| Protein seq | MAISPSNQCIRCAVLGEQSAPWAELCGNPGCQHVELVLLPTTCSVAGGIWRACHLCCCDLETCLPIFHCCACTVQVWERVHSRLGFICPQPTPHLPSWWLAVRKMINKQERRTFDAGVILVTWLIWKEHNARVFEGKDTMVFALCGRWLAYLHRLTPGHIKALRVLM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0020310 | OsIR64_11g0020310.01 | Chr11 | 25644950 | 25645483 | + | NAM | ||
| CDS seq | ATGGCGATTTCTCCGTCAAATCAGTGTATTCGCTGCGCTGTGCTCGGTGAACAAAGTGCGCCTTGGGCAGAATTGTGTGGAAATCCAGGGTGCCAGCACGTTGAGCTTGTCTTACTGCCGACAACTTGCAGCGTTGCAGGTGGCATTTGGCGAGCTTGTCACCTTTGCTGCTGCGATCTGGAAACCTGCTTGCCCATCTTCCACTGCTGCGCATGCACGGTGCAGGTCTGGGAGCGGGTGCACAGCCGCCTGGGCTTCATTTGCCCACAGCCTACACCGCATTTGCCTTCCTGGTGGCTCGCGGTCCGCAAGATGATCAACAAGCAGGAGAGGAGAACCTTCGATGCAGGTGTGATCCTGGTGACATGGCTTATCTGGAAGGAACACAATGCCCGTGTTTTTGAGGGGAAGGACACTATGGTGTTTGCTCTATGTGGAAGGTGGCTGGCCTATTTACACCGCCTGACACCGGGGCATATCAAGGCATTGAGGGTTCTGATGTGA
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| Protein seq | MAISPSNQCIRCAVLGEQSAPWAELCGNPGCQHVELVLLPTTCSVAGGIWRACHLCCCDLETCLPIFHCCACTVQVWERVHSRLGFICPQPTPHLPSWWLAVRKMINKQERRTFDAGVILVTWLIWKEHNARVFEGKDTMVFALCGRWLAYLHRLTPGHIKALRVLM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36880 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019830 | SBH | 0.057990 | 0.0 | 0.193593 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020010 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019760 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019850 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0373700 | SBH | 0.160736 | 0.756672 | 6.280971 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023330 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020320 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019780 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014910 | SBH | 0.0 | 0.0 | 0.126599 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019630 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020010 | SBH | 0.0 | 0.0 | 0.0 |
