Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0023330 | OGI:11063750 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:29033317-29033761 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaagtgccctcttggcaagattatttggaaatcccgtatgccggtgagatgtaatttctttatgtttcccgccatgcgcaacgcttgcctcactgccgacaatctacaacatgccgatggagcctttctcgggtgtgccatctatgctccaacaacgggaaacctgccagcacatcttcatggaatgtgcttacacctagcagatttagggtcgggtgcgcatgtgtccaggctttttgtgttctttgccgtcagcggatttcgttgattggtggcttgcaccacagaaatccgttgctaaggttgaccacaaaacgttcaatgtgggggttatacttgcaacctggttgatttggaaagagcgcaacgcgagagtgttcgttggaatcgcggcaacggttccccagctctgttcagccatgggggatgaatgggagacctag
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| CDS seq | atgaagtgccctcttggcaagattatttggaaatcccgtatgccggtgagatgtaatttctttatgtttcccgccatgcgcaacgcttgcctcactgccgacaatctacaacatgccgatggagcctttctcgggtgtgccatctatgctccaacaacgggaaacctgccagcacatcttcatggaatgtgcttacacctagcagatttagggtcggcggatttcgttgattggtggcttgcaccacagaaatccgttgctaaggttgaccacaaaacgttcaatgtgggggttatacttgcaacctggttgatttggaaagagcgcaacgcgagagtgttcgttggaatcgcggcaacggttccccagctctgttcagccatgggggatgaatgggagacctag
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| Protein seq | MKCPLGKIIWKSRMPVRCNFFMFPAMRNACLTADNLQHADGAFLGCAIYAPTTGNLPAHLHGMCLHLADLGSADFVDWWLAPQKSVAKVDHKTFNVGVILATWLIWKERNARVFVGIAATVPQLCSAMGDEWET |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0023330 | OsLima_11g0023330.01 | Chr11 | 29033317 | 29033761 | + | NAM | ||
| CDS seq | atgaagtgccctcttggcaagattatttggaaatcccgtatgccggtgagatgtaatttctttatgtttcccgccatgcgcaacgcttgcctcactgccgacaatctacaacatgccgatggagcctttctcgggtgtgccatctatgctccaacaacgggaaacctgccagcacatcttcatggaatgtgcttacacctagcagatttagggtcggcggatttcgttgattggtggcttgcaccacagaaatccgttgctaaggttgaccacaaaacgttcaatgtgggggttatacttgcaacctggttgatttggaaagagcgcaacgcgagagtgttcgttggaatcgcggcaacggttccccagctctgttcagccatgggggatgaatgggagacctag
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| Protein seq | MKCPLGKIIWKSRMPVRCNFFMFPAMRNACLTADNLQHADGAFLGCAIYAPTTGNLPAHLHGMCLHLADLGSADFVDWWLAPQKSVAKVDHKTFNVGVILATWLIWKERNARVFVGIAATVPQLCSAMGDEWET |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36880 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019830 | SBH | 0.057990 | 0.0 | 0.193593 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023200 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022840 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022800 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0406500 | SBH | 0.248178 | 1.836681 | 1.3062415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0015550 | SBH | 0.0 | 0.0 | 0.118708 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0436800 | SBH | 0.2076495 | 11.592792 | 0.0196965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023430 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018090 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014910 | SBH | 0.0 | 0.0 | 0.126599 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023020 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023430 | RBH | 0.0 | 0.0 | 0.0 |
