Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0672600 | OGI:11077130 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:27175081-27177923 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGCAGTAGGGGTCGAATGCGCTAAGCTCCTTGCATTTCAAACTACAGGCCACGGCGTCGGCTCTGAGGAGCTGGGGCGCGTGGCGGATCAGCGACTTGCGGCTGCAACTGGCAATTGCGCACGAAATCATCCTCCAGCTTGATAGGGCGCTTGACGACCGCACGCTGTCGGTAGGAGAACGCGCCCTCCGCGCTGCGCTGAAGGGCCGATGCTTGGCGCTAGCGTCTCTCGAGCGCATCCGGCTAAAACAAAGATCTAGGCTCCTCTACCTCAAGCACAGTGGTACTAGTGCTCAGTTCTTCCGTCTGAAAATTAACGCTCGTCGGCGTAAGAAGGCGATCCCCACGAAGATAAACTCCAAGCAGCGTATGACTACTTCCTCAACATTATGGGTTCGGCAAATCCAAGAACAGTGGCGATCTCCTTATCCACGATCGGGGTGGCCTCGCATAATCTTTCAGACTTGGAAAGTGATATCATGGAAGATGAGGTGAAGAAGGTGATTATGGATATGCCTAGTGAAAAGGCCCCGGGCCCAGATGGCTTCAGTGGGGGTTTCTTCAAGAGGTGTTGGGACATCGTGAAGGGGGATTTGTTGGCGGCCTTGAACCTGGCCTGGAGGGGAAACTCGCAGCATCTGCATCTGTTGAACACGGCGGCGATTGTTCTACTACCTAAGAAGGATGACCCATCTCATTTGGCGGATTATCGCCCGATAAGCCTCATCCACAGTTTCTCTAAGATCTTGGCAACGAGGGTGGCTCCTAGGATGGGAGAATTGGTCGGCCATGCACAGTCGGCCTTCATCAAGGGAAGGAGGATTCAGGAAAACTTCCTTTTCGTTCATGGGGCAGTGAAGATGTTGCACCGGTTAAAGCAGCCGGCAATGCTGCTCAAACTCGACATAGCGAAGGCCTTCGATACGGTGTCCTGGGAGTTCCTCCTTGAGCTACTCGCTCACCTGGGGTTTGGACGCTGGTGGCGGGACTGCATTGCCACTCTGCTGGCTTCAGCGTCAACATCAGTAATCATCAACGGGAGGAACTCTCAAAGGATTCACCTTGCCAGGGGCTTGCGGCAAGGGGACCCTCTATCTCCGCTGCTATTCATCCTTGTCATGGATACCTTTGCGGCGATGTGTGCGACGGCTCTTCAAAGGGGCGCGCTCTCCCCGCTTGCTAGAGATTTGCTGCCGCTGCGAGTGTCCCTATATGCGGATGATGCAATCGTTTTCTTTTACCCCTCCACACAAGACGCTGCCGTCATCCAGTTCATTCTCAACCTTTTGGGAGCTGCTACGGGGCTCGTCTCCAACCTTCTAAAGAGCTCGGTGACGCCTATCCATTGTTCCGAGCTGCAGGTTCAGGCGGTCACAGGGGTGCTCGGATGCCCGGTTAAGGAGCTCCCGATCGTCTACCTTGGTCTTCCGCTTTCGGTGCGGAAACCGGCAAAGGCACAAGTTCAACCTTTGATGGACAGAGTGGCCAAAAATCTGGCAGGTTGGAAGCCACGATTATTGTCTCCTGACGCTCGTCTTGCGATCATTAAGCACGTGCTCATGGCGCTCCCGCTGTACTTTATGTCTGTATTGGAGCTCCCTGCTTGGGCGATCAAGGAGATTGAAAAAAAGTGTCGTGGTTTCCTTTGGAAGGGGGATGAAGAGGCGCCGGGGCATTGCAGTTTGGTAGCTTGGGAGAAGCTGTGCTTACCTATTGAGAATGGTGGCTTGGGCATCAGGAATCTTGCCCTCATGGGCGTGGCTCTTCGGGCACGTTGGGCATGGATGAGTCGTGCCCATCCGGACGGACCGTGGGCACAACCTCCGGACAAGAAGGCGCGGCAATGCTTCTTGGCTGGGTCCACCATGGTGCTTGGTAACGGTGAGAGCACTTCCTTCTGGTGTGATAATTGGCTCCTGGGTGGGGGATCAATTGAATTCAGGGCGCCGATCCTTTTCTCCTTCGTTCGGGATAGAGGACGATCTGTGGGCAGTGCGCTGCGGAACAACTCGTGGGTGGCAGACATCAGAGGGGGTTTGTCCATTTAGGCTCTCGTCGAGTACTTCGGTATCTGGGATATGGTGGCTAACATATCTTTGCAAGAGGCCGAGGATGACAGGTTAGTTTGGAGGCTGGCGGAGAATGGGGAGTTCTCTGTCAAAACGGCGTACTCACTGCTTTGTGCTGGGAGGACGAAATGTGCGATCGGAAAGATTATTTGGAAGTCCAAGGCACCGGCGAAGTGCAAATTCTTCATGTTTCTCGCGGTGAGGGGTGCCTGCTTGACAGCGGAGAGGATGGCACCTTTGCACAAAAGCCGGCGAGACTTGCGCTCATCTCTTCCTTCAGTGCCAATTCACGCAGCAGGTCTGGGATGCGGTGCGGCGGCGAATTGGCCTCTCCTGCACAACGCCGTCCTCTGATCTCTCCTCTTGGTGGTGCTCGGCACGCAAGATGATCCCTAAGCACAGCCGCAAGATTTTCGACGCGGGGGTGATCTTGGTGACATGGATGGTATGGAAGGAACGTAACGCACGAATCTTCGACAACAAAGCCATGTCGGTTGTGCAGCTTTGTGCGACTATGGAGGAGGAGTGGGGAATGTGGGGAGCTGCAGGCTTGGTGCCGGGAGGAAGCTTGCAGCAGTCAAGCGAGCCCTTGCAGTAGTAGTGGTGGTAGCTCGCTGCCGGGAGGTGTCGTCTCGCGTTTGACGCAGCGGCAGGCAGCCATGTAAAAGCGTGTTGCTGGCTTTGCCGGCATGTAGTTCTTTGCTGTAGCTTGTAACTTATTCTCTCTCTTTTTCCCTTAATAAATCTCGGCTGGCTCTTCACGCCAGCCCGGCG
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| CDS seq | ATGGGTTCGGCAAATCCAAGAACAGTGGCGATCTCCTTATCCACGATCGGGGTGGCCTCGCATAATCTTTCAGACTTGGAAAGTGATATCATGGAAGATGAGGTGAAGAAGGTGATTATGGATATGCCTAGTGAAAAGGCCCCGGGCCCAGATGGCTTCAGTGGGGGTTTCTTCAAGAGGTGTTGGGACATCGTGAAGGGGGATTTGTTGGCGGCCTTGAACCTGGCCTGGAGGGGAAACTCGCAGCATCTGCATCTGTTGAACACGGCGGCGATTGTTCTACTACCTAAGAAGGATGACCCATCTCATTTGGCGGATTATCGCCCGATAAGCCTCATCCACAGTTTCTCTAAGATCTTGGCAACGAGGGTGGCTCCTAGGATGGGAGAATTGGTCGGCCATGCACAGTCGGCCTTCATCAAGGGAAGGAGGATTCAGGAAAACTTCCTTTTCGTTCATGGGGCAGTGAAGATGTTGCACCGGTTAAAGCAGCCGGCAATGCTGCTCAAACTCGACATAGCGAAGGCCTTCGATACGGTGTCCTGGGAGTTCCTCCTTGAGCTACTCGCTCACCTGGGGTTTGGACGCTGGTGGCGGGACTGCATTGCCACTCTGCTGGCTTCAGCGTCAACATCAGTAATCATCAACGGGAGGAACTCTCAAAGGATTCACCTTGCCAGGGGCTTGCGGCAAGGGGACCCTCTATCTCCGCTGCTATTCATCCTTGTCATGGATACCTTTGCGGCGATGTGTGCGACGGCTCTTCAAAGGGGCGCGCTCTCCCCGCTTGCTAGAGATTTGCTGCCGCTGCGAGTGTCCCTATATGCGGATGATGCAATCGTTTTCTTTTACCCCTCCACACAAGACGCTGCCGTCATCCAGTTCATTCTCAACCTTTTGGGAGCTGCTACGGGGCTCGTCTCCAACCTTCTAAAGAGCTCGGTGACGCCTATCCATTGTTCCGAGCTGCAGGTTCAGGCGGTCACAGGGGTGCTCGGATGCCCGGTTAAGGAGCTCCCGATCGTCTACCTTGGTCTTCCGCTTTCGGTGCGGAAACCGGCAAAGGCACAAGTTCAACCTTTGATGGACAGAGTGGCCAAAAATCTGGCAGGTTGGAAGCCACGATTATTGTCTCCTGACGCTCGTCTTGCGATCATTAAGCACGTGCTCATGGCGCTCCCGCTGTACTTTATGTCTGTATTGGAGCTCCCTGCTTGGGCGATCAAGGAGATTGAAAAAAAGTGTCGTGGTTTCCTTTGGAAGGGGGATGAAGAGGCGCCGGGGCATTGCAGTTTGGTAGCTTGGGAGAAGCTGTGCTTACCTATTGAGAATGGTGGCTTGGGCATCAGGAATCTTGCCCTCATGGGCGTGGCTCTTCGGGCACGTTGGGCATGGATGAGTCGTGCCCATCCGGACGGACCGTGGGCACAACCTCCGGACAAGAAGGCGCGGCAATGCTTCTTGGCTGGGTCCACCATGGTGCTTGGTAACGGTGAGAGCACTTCCTTCTGGTGTGATAATTGGCTCCTGGGTGGGGGATCAATTGAATTCAGGGCGCCGATCCTTTTCTCCTTCGTTCGGGATAGAGGACGATCTGTGGGCAGTGCGCTGCGGAACAACTCGTGGGTGGCAGACATCAGAGGGGGTTTGTCCATTTAG
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| Protein seq | MGSANPRTVAISLSTIGVASHNLSDLESDIMEDEVKKVIMDMPSEKAPGPDGFSGGFFKRCWDIVKGDLLAALNLAWRGNSQHLHLLNTAAIVLLPKKDDPSHLADYRPISLIHSFSKILATRVAPRMGELVGHAQSAFIKGRRIQENFLFVHGAVKMLHRLKQPAMLLKLDIAKAFDTVSWEFLLELLAHLGFGRWWRDCIATLLASASTSVIINGRNSQRIHLARGLRQGDPLSPLLFILVMDTFAAMCATALQRGALSPLARDLLPLRVSLYADDAIVFFYPSTQDAAVIQFILNLLGAATGLVSNLLKSSVTPIHCSELQVQAVTGVLGCPVKELPIVYLGLPLSVRKPAKAQVQPLMDRVAKNLAGWKPRLLSPDARLAIIKHVLMALPLYFMSVLELPAWAIKEIEKKCRGFLWKGDEEAPGHCSLVAWEKLCLPIENGGLGIRNLALMGVALRARWAWMSRAHPDGPWAQPPDKKARQCFLAGSTMVLGNGESTSFWCDNWLLGGGSIEFRAPILFSFVRDRGRSVGSALRNNSWVADIRGGLSI |
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| Function | LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:O00370] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0672600 | OsNip_11t0672600-01 | Chr11 | 27175081 | 27177923 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGTTCGGCAAATCCAAGAACAGTGGCGATCTCCTTATCCACGATCGGGGTGGCCTCGCATAATCTTTCAGACTTGGAAAGTGATATCATGGAAGATGAGGTGAAGAAGGTGATTATGGATATGCCTAGTGAAAAGGCCCCGGGCCCAGATGGCTTCAGTGGGGGTTTCTTCAAGAGGTGTTGGGACATCGTGAAGGGGGATTTGTTGGCGGCCTTGAACCTGGCCTGGAGGGGAAACTCGCAGCATCTGCATCTGTTGAACACGGCGGCGATTGTTCTACTACCTAAGAAGGATGACCCATCTCATTTGGCGGATTATCGCCCGATAAGCCTCATCCACAGTTTCTCTAAGATCTTGGCAACGAGGGTGGCTCCTAGGATGGGAGAATTGGTCGGCCATGCACAGTCGGCCTTCATCAAGGGAAGGAGGATTCAGGAAAACTTCCTTTTCGTTCATGGGGCAGTGAAGATGTTGCACCGGTTAAAGCAGCCGGCAATGCTGCTCAAACTCGACATAGCGAAGGCCTTCGATACGGTGTCCTGGGAGTTCCTCCTTGAGCTACTCGCTCACCTGGGGTTTGGACGCTGGTGGCGGGACTGCATTGCCACTCTGCTGGCTTCAGCGTCAACATCAGTAATCATCAACGGGAGGAACTCTCAAAGGATTCACCTTGCCAGGGGCTTGCGGCAAGGGGACCCTCTATCTCCGCTGCTATTCATCCTTGTCATGGATACCTTTGCGGCGATGTGTGCGACGGCTCTTCAAAGGGGCGCGCTCTCCCCGCTTGCTAGAGATTTGCTGCCGCTGCGAGTGTCCCTATATGCGGATGATGCAATCGTTTTCTTTTACCCCTCCACACAAGACGCTGCCGTCATCCAGTTCATTCTCAACCTTTTGGGAGCTGCTACGGGGCTCGTCTCCAACCTTCTAAAGAGCTCGGTGACGCCTATCCATTGTTCCGAGCTGCAGGTTCAGGCGGTCACAGGGGTGCTCGGATGCCCGGTTAAGGAGCTCCCGATCGTCTACCTTGGTCTTCCGCTTTCGGTGCGGAAACCGGCAAAGGCACAAGTTCAACCTTTGATGGACAGAGTGGCCAAAAATCTGGCAGGTTGGAAGCCACGATTATTGTCTCCTGACGCTCGTCTTGCGATCATTAAGCACGTGCTCATGGCGCTCCCGCTGTACTTTATGTCTGTATTGGAGCTCCCTGCTTGGGCGATCAAGGAGATTGAAAAAAAGTGTCGTGGTTTCCTTTGGAAGGGGGATGAAGAGGCGCCGGGGCATTGCAGTTTGGTAGCTTGGGAGAAGCTGTGCTTACCTATTGAGAATGGTGGCTTGGGCATCAGGAATCTTGCCCTCATGGGCGTGGCTCTTCGGGCACGTTGGGCATGGATGAGTCGTGCCCATCCGGACGGACCGTGGGCACAACCTCCGGACAAGAAGGCGCGGCAATGCTTCTTGGCTGGGTCCACCATGGTGCTTGGTAACGGTGAGAGCACTTCCTTCTGGTGTGATAATTGGCTCCTGGGTGGGGGATCAATTGAATTCAGGGCGCCGATCCTTTTCTCCTTCGTTCGGGATAGAGGACGATCTGTGGGCAGTGCGCTGCGGAACAACTCGTGGGTGGCAGACATCAGAGGGGGTTTGTCCATTTAG
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| Protein seq | MGSANPRTVAISLSTIGVASHNLSDLESDIMEDEVKKVIMDMPSEKAPGPDGFSGGFFKRCWDIVKGDLLAALNLAWRGNSQHLHLLNTAAIVLLPKKDDPSHLADYRPISLIHSFSKILATRVAPRMGELVGHAQSAFIKGRRIQENFLFVHGAVKMLHRLKQPAMLLKLDIAKAFDTVSWEFLLELLAHLGFGRWWRDCIATLLASASTSVIINGRNSQRIHLARGLRQGDPLSPLLFILVMDTFAAMCATALQRGALSPLARDLLPLRVSLYADDAIVFFYPSTQDAAVIQFILNLLGAATGLVSNLLKSSVTPIHCSELQVQAVTGVLGCPVKELPIVYLGLPLSVRKPAKAQVQPLMDRVAKNLAGWKPRLLSPDARLAIIKHVLMALPLYFMSVLELPAWAIKEIEKKCRGFLWKGDEEAPGHCSLVAWEKLCLPIENGGLGIRNLALMGVALRARWAWMSRAHPDGPWAQPPDKKARQCFLAGSTMVLGNGESTSFWCDNWLLGGGSIEFRAPILFSFVRDRGRSVGSALRNNSWVADIRGGLSI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0672600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018140 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022830 | SBH | 0.0 | 1.253209 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022790 | SBH | 2.093034 | 0.0 | 1.635827 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0409400 | RBH | 0.0970305 | 0.02587 | 1.285422 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0428400 | RBH | 0 | 0.036328 | 0.7333375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023660 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018100 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018390 | RBH | 0.0 | 0.0 | 0.0 |
