Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0017830 | OGI:11010520 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:23153010-23155986 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcgtcccaccaccaccaccaccaccgtggcgctcctgctcctcaccatcgtggaccacccgtgcggcgtccctgctgccaccacGccgtttggccgccggtgccaattaacgtgacgggcgcgggagcGggacgcgctgctggcgttcaagagaggcatcaccgccgatccggcGggcgtccacgcctcatggcggcacgacggcgacgccgatgaacaccaagactgctgccggtggtgaggcgtccggtgcagcgatcggacaggccatgtcgtcgggcttcgcctccgcaacaggaggacgacgactacaccgactacgaagaaactgccttagtcggcgagataagtccatctttgctcaatttgccccatctgaaacacctcgatctcagcctaaatgcactgcacggaccgactggtcgtgtcccggagttcttgggttctctgAaaaatttgagatatcttaacctctcaggcatagagttttctggtagagtgccccctcagcttggtaacctcacgaatctgcgttttctcgacctatcaaccagacaattctctgtacacatgaactccacggatctctcatggctagcacgcctaggttctctgacgtatctcaacttgggttctatggaccttagcatggcacatgattaGgctcatgtgatgaacaatattccttccctgaagaccctttatcttgctgattgcctacttgctgatgcaaaccaaactttcccacactttaacctaacAaatcttgacgagcttgatctctccggcaattacttccaccattcaattgcatcttgttgGTttctggaatgcaaagggactaaagtaccttgacttcttcaacactggcttgtacggtcaattTccaaatgctctagaacacttgagatccctCcaaatccttgacttgtcatctactccaagtaacatggacatcaggacaataaacatgacAaatctatgcaacctgagAatcctacagctcacatcgaggtcaacttcacggggacattgcagagttactggatagattacctcaatgctcgttcaccggtttgaatgaactctatttgtcagataataatataaccggaatgctaccaaatcgtctggatcacttaaatggcttggtcattcttgacatctctcagaacaaactctctggccatgtgccttctcagataggtaagttcagtaatttgacttacttggaccttagcaataataacctcgatggtgtgatcacagatgaaCactttgctagtctgagaaacttgaagacattgggcttatctggtaattcctttaggattttggtggattcagaatatttacctccatttagccttgaagttgcattgtttcaatcgtgccatattggtccttcaTttcctagttggctgaaatggcaggttaacattacttatcttgatatatcgtcagcaaatattactgacaagcttccagactggttttctacaacaTtttcgaatgtcggtcgtttagatatttccaacaatgcaatcaatggtagtttgccagcaaacatggaggttatgacttcgttgagtagactatatttgaattccaacaagcttaccggtcaaataccagtgttgccagaaggactcaacataatggacatctccaggaactccttatcaggatctctaccatcgaactttggagccctttacttatttgatcttcgtctcttctccaatcgtatcactggtcatattccacaatcaagtgtgaactacaaagccttgatatcttagacttagccgataaccTTttggtTTTTGggggagaatttcctcagtgttttcaacaaaaagaattgagaatgctacttgccagcaataatatgttatctggaaagttcccaccatttttgcagagtagccaaactctatatatcctagatttggcattcaataacttccatggaagactacccatgtggattggagagctatcaaaactagaaatactgcgactaggccacaataatttctctggaagtgttccgacaaccattaccAatattacAaaacttcttcatctagatttgtcaactaatagtatatccggcgttttaccatttcatttgtcaaatttaactggtatgacaagtctttctaatcctaccaccTttggacactatgttcccattttgaatatgtctgtagacaccAagagccatgaacattactaccaagaaggtgtaatatttcaaatggtggaattccagaggaaatagcttctcttgatggaattaaaaatctgaatttatcatggaatcagtttagtggaagaattccagaaaacatcggggccatgtggtcattggaatcactagacctctccgaaaacaatctttccggagaaatcccatcaagcatatcaaacctaacatgtctaagtagtctggaCttgtcatacaaccatctcacaggAagaataccgtcaggtggtcaactcgacatcctctatgcggagaacccatccatgtacaatggcaacaacggtctttgtgggtgtcctcttcggagaaattgctcagatgatggcaataataatctttgtggttatcctcttcggagaaattgctcagatgatggcaataatggtctttgtggttatcctcttcggagaaattgctcagatcacaacagttgtccatcgaagcatggtgttgaaatAaaaaaatattcagacacaatgttcttgtgctttggactaggttcaggatttgtggctggtctttgggtggtcttctgtaccatcttgttcaagaaagcatggaggatggcttacttccgcctattcgacaaggTgaatgacaaagtgtatttgtttgttgttgttacatgggcacacgtgtgccaaaagtcaggcacgcgttaagccatcgctataaattaagaggccagagtccttttggtgca
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| CDS seq | atgaacaatattccttccctgaagaccctttatcttgctgattgcctacttgctgatgcaaaccaaactttcccacactttaacctaacAaatcttgacgagcttgatctctccggcaattacttccaccattcaattgcatcttgttgGTttctggaatgcaaagggactaaaataggtaagttcagtaatttgacttacttggaccttagcaataataacctcgatggtgtgatcacagatgaaCactttgctagtctgagaaacttgaagacattgggcttatctggtaattcctttaggattttggtggattcagaatatttacctccatttagccttgaagttgcattgtttcaatcgtgccatattggtccttcaTttcctagttggctgaaatggcaggttaacattacttatcttgatatatcgtcagcaaatattactgacaagcttccagactggttttctacaacaTtttcgaatgtcggtcgtttagatatttccaacaatgcaatcaatggtagtttgccagcaaacatggaggttatgacttcgttgagtagactatatttgaattccaacaagcttaccggtcaaataccagtgttgccagaaggactcaacataatggacatctccaggaactccttatcaggatctctaccatcgaactttggagccctttacttatttgatcttcgtctcttctccaatcgtatcactggtcatattccacaatcaagtagtagccaaactctatatatcctagatttggcattcaataacttccatggaagactacccatgtggattggagagctatcaaaactagaaatactgcgactaggccacaataatttctctggaagtgttccgacaaccattaccAatattacAaaacttcttcatctagatttgtcaactaatagtatatccggcgttttaccatttcatttgtcaaatttaactggtatgacaagtctttctaatcctaccaccTttggacactatgttcccattttgaatatgtctgtagacaccAagagccatgaacattactaccaagaaggttttagtggaagaattccagaaaacatcggggccatgtggtcattggaatcactagacctctccgaaaacaatctttccggagaaatcccatcaagcatatcaaacctaacatgtctaagtagtctggaCttgtcatacaaccatctcacaggAagaataccgtcaggtggtcaactcgacatcctctatgcggagaacccatccatgtacaatggcaacaacggtctttgtgggtgtcctcttcggagaaattgctcagatgatggcaataataatctttgtggttatcctcttcggagaaattgctcagatgatggcaataatggtctttgtggttatcctcttcggagaaattgctcagatcacaacagttgtccatcgaagcatggtgttgaaatAaaaaaatattcagacacaatgttcttgtgctttggactaggttcaggatttgtggctggtctttgggtggtcttctgtaccatcttgttcaagaaagcatggaggatggcttacttccgcctattcgacaaggTgaatgacaaagtgtatttgtttgttgttgttacatgggcacacgtgtgccaaaagtcaggcacgcgttaa
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| Protein seq | MNNIPSLKTLYLADCLLADANQTFPHFNLTNLDELDLSGNYFHHSIASCWFLECKGTKIGKFSNLTYLDLSNNNLDGVITDEHFASLRNLKTLGLSGNSFRILVDSEYLPPFSLEVALFQSCHIGPSFPSWLKWQVNITYLDISSANITDKLPDWFSTTFSNVGRLDISNNAINGSLPANMEVMTSLSRLYLNSNKLTGQIPVLPEGLNIMDISRNSLSGSLPSNFGALYLFDLRLFSNRITGHIPQSSSSQTLYILDLAFNNFHGRLPMWIGELSKLEILRLGHNNFSGSVPTTITNITKLLHLDLSTNSISGVLPFHLSNLTGMTSLSNPTTFGHYVPILNMSVDTKSHEHYYQEGFSGRIPENIGAMWSLESLDLSENNLSGEIPSSISNLTCLSSLDLSYNHLTGRIPSGGQLDILYAENPSMYNGNNGLCGCPLRRNCSDDGNNNLCGYPLRRNCSDDGNNGLCGYPLRRNCSDHNSCPSKHGVEIKKYSDTMFLCFGLGSGFVAGLWVVFCTILFKKAWRMAYFRLFDKVNDKVYLFVVVTWAHVCQKSGTR |
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| Function | Receptor-like protein EIX1 [UniProtKB/Swiss-Prot:Q6JN47] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0017830 | OsNaBo_11g0017830.02 | Chr11 | 23153684 | 23155986 | + | NAM | ||
| CDS seq | atgaacaatattccttccctgaagaccctttatcttgctgattgcctacttgctgatgcaaaccaaactttcccacactttaacctaacAaatcttgacgagcttgatctctccggcaattacttccaccattcaattgcatcttgttgGTttctggaatgcaaagggactaaaataggtaagttcagtaatttgacttacttggaccttagcaataataacctcgatggtgtgatcacagatgaaCactttgctagtctgagaaacttgaagacattgggcttatctggtaattcctttaggattttggtggattcagaatatttacctccatttagccttgaagttgcattgtttcaatcgtgccatattggtccttcaTttcctagttggctgaaatggcaggttaacattacttatcttgatatatcgtcagcaaatattactgacaagcttccagactggttttctacaacaTtttcgaatgtcggtcgtttagatatttccaacaatgcaatcaatggtagtttgccagcaaacatggaggttatgacttcgttgagtagactatatttgaattccaacaagcttaccggtcaaataccagtgttgccagaaggactcaacataatggacatctccaggaactccttatcaggatctctaccatcgaactttggagccctttacttatttgatcttcgtctcttctccaatcgtatcactggtcatattccacaatcaagtagtagccaaactctatatatcctagatttggcattcaataacttccatggaagactacccatgtggattggagagctatcaaaactagaaatactgcgactaggccacaataatttctctggaagtgttccgacaaccattaccAatattacAaaacttcttcatctagatttgtcaactaatagtatatccggcgttttaccatttcatttgtcaaatttaactggtatgacaagtctttctaatcctaccaccTttggacactatgttcccattttgaatatgtctgtagacaccAagagccatgaacattactaccaagaaggttttagtggaagaattccagaaaacatcggggccatgtggtcattggaatcactagacctctccgaaaacaatctttccggagaaatcccatcaagcatatcaaacctaacatgtctaagtagtctggaCttgtcatacaaccatctcacaggAagaataccgtcaggtggtcaactcgacatcctctatgcggagaacccatccatgtacaatggcaacaacggtctttgtgggtgtcctcttcggagaaattgctcagatgatggcaataataatctttgtggttatcctcttcggagaaattgctcagatgatggcaataatggtctttgtggttatcctcttcggagaaattgctcagatcacaacagttgtccatcgaagcatggtgttgaaatAaaaaaatattcagacacaatgttcttgtgctttggactaggttcaggatttgtggctggtctttgggtggtcttctgtaccatcttgttcaagaaagcatggaggatggcttacttccgcctattcgacaaggTgaatgacaaagtgtatttgtttgttgttgttacatgggcacacgtgtgccaaaagtcaggcacgcgttaa
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| Protein seq | MNNIPSLKTLYLADCLLADANQTFPHFNLTNLDELDLSGNYFHHSIASCWFLECKGTKIGKFSNLTYLDLSNNNLDGVITDEHFASLRNLKTLGLSGNSFRILVDSEYLPPFSLEVALFQSCHIGPSFPSWLKWQVNITYLDISSANITDKLPDWFSTTFSNVGRLDISNNAINGSLPANMEVMTSLSRLYLNSNKLTGQIPVLPEGLNIMDISRNSLSGSLPSNFGALYLFDLRLFSNRITGHIPQSSSSQTLYILDLAFNNFHGRLPMWIGELSKLEILRLGHNNFSGSVPTTITNITKLLHLDLSTNSISGVLPFHLSNLTGMTSLSNPTTFGHYVPILNMSVDTKSHEHYYQEGFSGRIPENIGAMWSLESLDLSENNLSGEIPSSISNLTCLSSLDLSYNHLTGRIPSGGQLDILYAENPSMYNGNNGLCGCPLRRNCSDDGNNNLCGYPLRRNCSDDGNNGLCGYPLRRNCSDHNSCPSKHGVEIKKYSDTMFLCFGLGSGFVAGLWVVFCTILFKKAWRMAYFRLFDKVNDKVYLFVVVTWAHVCQKSGTR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0017830 | OsNaBo_11g0017830.01 | Chr11 | 23153010 | 23153674 | + | NAM | ||
| CDS seq | atgcgtcccaccaccaccaccaccaccgtggcgctcctgctcctcaccatcgtggaccacccgtgcggcgtccctgctgccaccacGccgtttggccgccggtgccaattaaccGggacgcgctgctggcgttcaagagaggcatcaccgccgatccggcGggcgtccacgcctcatggcggcacgacggcgacgccgatgaacaccaagactgctgccggtggtgaggcgtccggtgcagcgatcggacaggccatgtcgtcgggcttcgcctccgcaacaggaggacgacgactacaccgactacgaagaaactgccttagtcggcgagataagtccatctttgctcaatttgccccatctgaaacacctcgatctcagcctaaatgcactgcacggaccgactggtcgtgtcccggagttcttggagtgccccctcagcttggtaacctcacgaatctgcgttttctcgacctatcaaccagacaattctctgtacacatgaactccacggatctctcatggctagcacgcctaggttctctgacgtatctcaacttgggttctatggaccttagcatggcacatgattaG
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| Protein seq | MRPTTTTTTVALLLLTIVDHPCGVPAATTPFGRRCQLTGTRCWRSREASPPIRRASTPHGGTTATPMNTKTAAGGEASGAAIGQAMSSGFASATGGRRLHRLRRNCLSRRDKSIFAQFAPSETPRSQPKCTARTDWSCPGVLGVPPQLGNLTNLRFLDLSTRQFSVHMNSTDLSWLARLGSLTYLNLGSMDLSMAHD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.415672 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0560900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35890 | SBH | 0.111631 | 0.192657 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0560900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017830 | SBH | 0.128877 | 6.788608 | 1.696541 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017810 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017770 | SBH | 0.164332 | 9.540369 | 4.595458 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017030 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017590 | RBH | 0.000000 | 0.0 | 0.891763 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0329800 | RBH | 0.417111 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018060 | RBH | 0.266576 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0342400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017930 | SBH | 0.033251 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017980 | RBH | 0.185928 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017600 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017390 | SBH | 0.092477 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017470 | RBH | 0.038891 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017540 | SBH | 0.000000 | 0.0 | 0.071211 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017860 | SBH | 0.0 | 0.0 | 0.0 |
