Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0009780 | OGI:11026280 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:9159862-9162642 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaatggttccaggcggtaaatactgcctttgaaggtagagcaacataacgccgctatatcaagaatacgtgtagttgtaattattctactgccagaattattctcaggcaatacacacttcaagattTCccaagctgataagctccagatatcatcaatgacaattaaatacctatggcccaagttcatacaataagtccggatacgaaatagcaggaagaaataacagaaaggtagtagaaataacacaaacctcttgtcatggagaaattctctgatcttgtcaatgagttgcCTctcatcatccctattaccagaagcCccaagtCcagaaagcaaatccaaaagaatcctcttcatgtctggcatttgagatacaaacacgaaagcagcacaatcaaactgccatttgattttctgataaacttgTttggcaagagtagttttccccaaacctccaaaccctgcgatagacaccatcttaagtcaattaacaaatccacaatcttcatcagctgcattctcccttagcaacttgataaTtttgtccctcggcccatcaatCccaacaagtccacctacctcggaataaagagtctcactccggtgtcttctacctagagtagaaaaaaatctgaaccgttgatcttatttgatccaatggttcagatctatttctactaccaccacacttagtggtagtagaatcgtggaggggtacttttatccaggaaaaattatctgcggagggatattttcgtccttcccgaatcgcgcatatggagccgatgcggagagaaccctgcggctcccatcaccaccttgacgacctcgcctgctccaccgccctcgacgcctcctacTtcctcgcctccgtcgcactggctgcctcagccgccctcgacgagctcgcatctccatctgggatcgccagagctgcgccctctctgccgctcccccgcgtcggcccaccttccgacgagttcgcctcccggatctccgcctccgacccagcaccgtgccaccggccgccgccaagacctcgtccacctcgctatccccttcctcgtcgtcggcctcctcccccacgctcggctccagccctgtccatctccgcccgccgttgatcccacagccgcgagggcgagCccccaatccatcgcctcccaagcggaacccgcagcctccagagccaatgaccaccaatctctcgacctccgaatcatcatccaagactcctctcgctggctatagcgctgctctccaacggattagctgacatgagaagactcTttttctgctttgcaagtcagatttgatttgtttttcttgctgcttgtaggtttgcagctcgaacatctgcactgaatcttcTtttttgttggcctctagttctcgaatagTttttctgcttgtctacttaagttctgcagttcttggtcataaTttttcctcctagaagaagggattcaagttgaatgccagtaaactgaatccggagcaagtgagcttgttcagaatggctgagcatgacaaggtggacaagctaatgatcactatgtcaatcaacgcttgagagattcctggtgtgctatgtcctgtaattcctgtgaattcattatctcaagatggctttgggtggctttggcttgttactgatggCcatgtttttttttcaaaactatagcttattaacagcttgtggttttgaaagtgcctatctgtatatatcatcgTttttgtacgtggttcaatgtatattacttgttgtaattgcaattgtaaagtctacgtaaaaaacataccggattattcttccgttgccttgtatctgtcattgctggattggagtgtttcgatttgtccatcatgtgtaatattcagatatataactaatatatttaaaTttcacatgaaacaatcaagctgaatggaaaccaaatacctacagcaagaaacatctatggaacgcgatgcacaagcgccggcggtggccggacctcgcgatctgcttttcttttTCcttccctgcgctctccTttttgatggagagcgactctgctcttcgatggagagggatcgagcgacgcttgaccataggacgcacaaatgagaaaaaaagttaagtgtcagatttacccctattcggTtttagcactttactaatttaccctttaaaataaacggtcgagattaattctacttggagtagaatactgcaagtagagggcaccggagcgtctctccggaataaaacgctggcaggcgagggtcaatggattcacagccggtacccatggacacagatacatcaagcttatacctttttctacgatcgttcacctcgagaacttggttcttgagtttttcaatctcttgagaaatagtacagcttgagagcagctctctcagtttcaggatattgttgatgataaatcctctgatacctgtaggctcattggatttttcactccgagccatgaaagcgtcaatggtgtcctcgatgtcgtaggccagctcccttacctctttcatccaagccttcacttgcaagtggggctcactcaacatcgcgtacttctgcatcacggtgttcatgctgctcagctcgtttcgcaggaacagcacatccttctctactgttttcttcttggcatactctttttccagcatactggatagcttgccgaggagagactccatgactcctgtagaggcgctcaccagtgcacccgccatgaattgcctcggtttcttgacaggaaggacaatatcaacag
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| CDS seq | atggcgggtgcactggtgagcgcctctacaggagtcatggagtctctcctcggcaagctatccagtatgctggaaaaagagtatgccaagaagaaaacagtagagaaggatgtgctgttcctgcgaaacgagctgagcagcatgaacaccgtgatgcagaagtacgcgatgttgagtgagccccacttgcaagtgaaggcttggatgaaagaggtaagggagctggcctacgacatcgaggacaccattgacgctttcatggctcggagtgaaaaatccaatgagcctacaggtatcagaggatttatcatcaacaatatcctgaaactgagagagctgctctcaagctgtactatttctcaagagattgaaaaactcaagaaccaagttctcgagccagcgagaggagtcttggatgatgattcggaggtcgagagattggtggtcattggctctggaggctgcgggttccgcttgggaggcgatggattggggGctcgccctcgcggctgtgggatcaacggcgggcggagatggacagggctggagccgagcgtgggggaggaggccgacgacgaggaaggggatagcgaggtggacgaggtcttggcggcggccggtggcacggtgctgggtcggaggcggagatccgggaggcgaactcgtcggaaggtgggccgacgcgggggagcggcagagagggcgcagctctggcgatcccagatggagatgcgagctcgtcgagggcggctgaggcagccagtgcgacggaggcgaggaAgtaggaggcgtcgagggcggtggagcaggcgaggtcgtcaagggtttggaggtttggggaaaactactcttgccaaAcaagtttatcagaaaatcaaatggcagtttgattgtgctgctttcgtgtttgtatctcaaatgccagacatgaagaggattcttttggatttgctttctgGacttggGgcttctggtaatagggatgatgagAGgcaactcattgacaagatcagagaatttctccatgacaagaggtttgtgttatttctactacctttctgttatttcttcctgctatttcgtatccggacttattgtatgaacttgggccataggtatttaattgtcattgatgatatctggagcttatcagcttggGAaatcttgaagtgtcggcgttatgttgctctaccttcaaaggcagtatttaccgcctggaaccattaa
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| Protein seq | MAGALVSASTGVMESLLGKLSSMLEKEYAKKKTVEKDVLFLRNELSSMNTVMQKYAMLSEPHLQVKAWMKEVRELAYDIEDTIDAFMARSEKSNEPTGIRGFIINNILKLRELLSSCTISQEIEKLKNQVLEPARGVLDDDSEVERLVVIGSGGCGFRLGGDGLGARPRGCGINGGRRWTGLEPSVGEEADDEEGDSEVDEVLAAAGGTVLGRRRRSGRRTRRKVGRRGGAAERAQLWRSQMEMRARRGRLRQPVRRRRGSRRRRGRWSRRGRQGFGGLGKTTLAKQVYQKIKWQFDCAAFVFVSQMPDMKRILLDLLSGLGASGNRDDERQLIDKIREFLHDKRFVLFLLPFCYFFLLFRIRTYCMNLGHRYLIVIDDIWSLSAWEILKCRRYVALPSKAVFTAWNH |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0009780 | OsNaBo_11g0009780.01 | Chr11 | 9159862 | 9162642 | - | NAM | ||
| CDS seq | atggcgggtgcactggtgagcgcctctacaggagtcatggagtctctcctcggcaagctatccagtatgctggaaaaagagtatgccaagaagaaaacagtagagaaggatgtgctgttcctgcgaaacgagctgagcagcatgaacaccgtgatgcagaagtacgcgatgttgagtgagccccacttgcaagtgaaggcttggatgaaagaggtaagggagctggcctacgacatcgaggacaccattgacgctttcatggctcggagtgaaaaatccaatgagcctacaggtatcagaggatttatcatcaacaatatcctgaaactgagagagctgctctcaagctgtactatttctcaagagattgaaaaactcaagaaccaagttctcgagccagcgagaggagtcttggatgatgattcggaggtcgagagattggtggtcattggctctggaggctgcgggttccgcttgggaggcgatggattggggGctcgccctcgcggctgtgggatcaacggcgggcggagatggacagggctggagccgagcgtgggggaggaggccgacgacgaggaaggggatagcgaggtggacgaggtcttggcggcggccggtggcacggtgctgggtcggaggcggagatccgggaggcgaactcgtcggaaggtgggccgacgcgggggagcggcagagagggcgcagctctggcgatcccagatggagatgcgagctcgtcgagggcggctgaggcagccagtgcgacggaggcgaggaAgtaggaggcgtcgagggcggtggagcaggcgaggtcgtcaagggtttggaggtttggggaaaactactcttgccaaAcaagtttatcagaaaatcaaatggcagtttgattgtgctgctttcgtgtttgtatctcaaatgccagacatgaagaggattcttttggatttgctttctgGacttggGgcttctggtaatagggatgatgagAGgcaactcattgacaagatcagagaatttctccatgacaagaggtttgtgttatttctactacctttctgttatttcttcctgctatttcgtatccggacttattgtatgaacttgggccataggtatttaattgtcattgatgatatctggagcttatcagcttggGAaatcttgaagtgtcggcgttatgttgctctaccttcaaaggcagtatttaccgcctggaaccattaa
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| Protein seq | MAGALVSASTGVMESLLGKLSSMLEKEYAKKKTVEKDVLFLRNELSSMNTVMQKYAMLSEPHLQVKAWMKEVRELAYDIEDTIDAFMARSEKSNEPTGIRGFIINNILKLRELLSSCTISQEIEKLKNQVLEPARGVLDDDSEVERLVVIGSGGCGFRLGGDGLGARPRGCGINGGRRWTGLEPSVGEEADDEEGDSEVDEVLAAAGGTVLGRRRRSGRRTRRKVGRRGGAAERAQLWRSQMEMRARRGRLRQPVRRRRGSRRRRGRWSRRGRQGFGGLGKTTLAKQVYQKIKWQFDCAAFVFVSQMPDMKRILLDLLSGLGASGNRDDERQLIDKIREFLHDKRFVLFLLPFCYFFLLFRIRTYCMNLGHRYLIVIDDIWSLSAWEILKCRRYVALPSKAVFTAWNH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.934159 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0265900 | SBH | 1.210552 | 0.971954 | 0.596717 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g16500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0265900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0010020 | SBH | 0.076668 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0009910 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0009930 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0009740 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0009870 | SBH | 7.432628 | 0.0 | 1.274813 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0139900 | SBH | 1.28614 | 0.2683665 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009850 | SBH | 0.958641 | 0.0 | 0.097318 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0141000 | SBH | 1.2125525 | 0.778148 | 0.028717 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0009980 | SBH | 0.406940 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0010090 | SBH | 1.245670 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0009850 | SBH | 8.934101 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0068720 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009870 | SBH | 0.062665 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G010020 | SBH | 0.118653 | 0.0 | 0.160743 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
