Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_11g0009910 OGI:11026280 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr11:9066491-9074384
Gene Symbol -
DNA seq

tcagcccaattcagtaagggatgatagcactgcttccctgcatcgcaacttataaccctctgtcccgacagggtcttcaacagaaatcgcaagatctctcagtttggtcagacatttaagatcctcaacgaatcttattgagttgcttgagatgtggaacagctcctctaaactttgcatagttccaatcctttctggtagtctcgctttagtactcacatataggcacacgagtttctataatcgaacaatggtatctggaagggcttgtatggaacataatgtgacatctaacatctctaaatgttgcaagttcccaatttcaccaggaagttcagtgataaattgagaatgaagaaccagatacctaagttgaagcatacttcctaaacattcaatgtggtgattctgtaacaatgtacaataacctaagtccaacactcgcaaagattgaagattcataaaatatggtacttgcttagtagacccaaacacactgattgaacggacagaatttttgtttgttatgttggctgggattacagcatcttcagaatcgttgaactggagggacagtcgatggatcttttccggcaaagagctgcacttttgtccatctattactgtgacgaaattatcttctttcgacatggaaatgataatgttaagaaccaagtcatgaacttgacaaatttgtatactgccatcatatgcaatgctcacaggtaagatcatacttctattgataagctcgttaaagtaactctccgctacttggtccaatctgttacacctgtcttcagcaataaatccttcagctatccatttccttattaactttttggggctaatcttctagtcctctggatatatactgagatatagtaagcaagtcttcaaatgtggaggcaaatcatagaaactaagtaatactccgttcatttcaaaatgtttgacaccattgactttttagcacatgtttgaccgttcgtcttattaaaaaaatttgtgaaatatgtaaaactatatgtgtacataaaaatatatttaacaatgaatcaaattgatatgaaaagaataaataattacttaaattttttgaataaGACcaatggtcaaacacatactaaaaaaaagtcaacggtgtcaaatattttaaaacggagggagtggtatctttttcagaccttgtagagtatggctattttccagtgctgagccaatagaatttagcaccaactcccactcttcctttgtgttagatttggttgccaacaaactagcaatatgaagtatggccaaaggcaaaccaccacattttcttaaaactaggaaggaagcccgcgcagatgcgcaggcaatttatttttgtttatataaaaaactactgaaaaaagtcttatatcatcatattaactataggaacaatagattacctcgtaaccttaccataaaaagaagggaatatttatattgtgaaatagaccatataatttgatatagtaaatgatagtgtctatcatattcaaacaaaaatcactttgttttggttatatgtaaacttaccatcatcatcctttgcaaacataatatgagttttgatgttttttcttttattatacatctaattcacctatgcatgttcatgggtaatgtacaaGgaaatactctatattatcaaaattatttttactaattgttaacacaatttatatgagaatgacataattaaaaaggataaaatatgattccatatgacatttttgattgtacatatgtacataagtttttttcgaatggtagtctctcgtatgttcattctttttcatgTtttttttgacaaatatttttctctcaaaggaggtagggtgttcatatgtgtattcatagtgtgggtgtgcacacgtttatatgaccgcgtatagttgcctttcacattgctagtcaaaaaaaatactttcaagaaaattggcgagggtggcaataagcggcgacatggcagcgtggcttcttcgtgaacctcgcaaagattggtcgctacatatatgcataatttgaggaaaacattagggccacaaagaaagaaatagaaaactacaagatggggtggaccatatacacacacttcttcgttatttttgacatctattgtatatgtacgtgcatagagagagattagctagttttaaggagcgagggcttatctgaataaatctaatttaatggttgaagataatggattcaccagtttaagtgcaaatcgatggctagatgttttgtttttcccttatattttttctaaaatttcctcctatttattagagcatcacatgacattttacaagtatttgtagaagtataggaacgctattgctcatactcacaatcaacttgcagtcaactattggttgttgtgattttgtggcatcctctatatatccatcatctttttgttaatgggttcccacttagtatcatcctaattattaagtgaattgtgcatgtatgtatcataaacaatataacttgacgattgtgacactggtttgtatatagaacttattacatactataggatttatcggagacatacgattgatatattatactattcttgattcacaaagtatattatgtactacatatttagttttagtgcataggtaataaatttatggttaagttctgaagtgcttatcagagtggctacttcgttatttatcatgaccacgtttaccaaattgctaaatggtgcgtattttacaaaatatttattattatagaTtttttttctaaaaatacaaataaacccattttgaagcttgtaatatttaatactcaattgatcttgtgctaatgacttgtgtcttttcgtgtgccctagataagctacgtcaatgagctagatcgaacgaaggctatgtaggaggaaaaggatattgacatggtgttaaatgaatatatttaaacttcaattttctaataatgtatgAaaagagtaaacataatatgtaaaaatatatttatgataaatttagtaacatccttttcccatatcagtattttttacaatagagagtgagtaatttttcaaattctacacacacttgaagttgtttttattttggaaaatgtaattttaatttaacaatcacataaactatgctttttatttatttatatttttatgggtgtttcaatgacatgcgcttaatttgaatacaactcgaaatagcatatatttttacaacttaaagtatagttaatattaatttaaattattagtttgattttccatctaatctaaatgatgataagagaaaaataaggatgtgggacccggcatgtgtatgtactgtacatagaaatagttgcgtacgtactctacgtaggtacttaagaaggaatacctacaaacctgtgcatgtataggcattacgatgtgggcctttttacagataaatataataactagtttctaagatagatctaatagttgaaaataatgggtccaccagattaaatgaaaaccgattaattagtagattttcttttttttatacaatttctatgatttattagagtgctatatgtcggtctatgagcaattatagagtactatgtggcggattagaagcgtttgttggaagtttatcctcttgattactttttctccctttttctctttatgaaaatatttacaacaataatttataaataaccacaaccttctaaattatatatttatttgtaacaatatattttaatttgtcataatttttaacttttaattcgtacgttcaattttttacctattttggaccattgtgttatttatgataaaaatcacaattagaatttaagtgtatgttatctacttcactcgtaaaatgtatattcttctaagttctatttactatcctttgtatgtcatttaaacggatatgaaaaactataaaaagaaagtgactatatattatttcatccagtaccacttcacttgcatgcataaataaaagatcgactttttaaagcctcaccaataagaagaatgcccgcgcagctgaaaacatatattatttttttttattgtacgttttttaccatatttgtagagtaataagttttgtttttctactatagaaaatactattttaaaaaactatctatttttgtctactaacgcatcgcatacgtacatattttttttttctagtgaaccgtacctttttaatagtttttttatcgtacgtacgtatgttcttttaaattttaaataatcagtacctaaagtttttgttttcttttcaattatgtgctcgtacgtagattttctggtatagacggttccactcgtgtgcactttccggtatatacggtttcaacgtacagtgtagtactcttttttggctttatagctgcacgtatgtttgtttgttctttttaagccaacagtacttaagggtttatatatccgatcgaaatataagttaattgttctcgtaaaaattctcatgtataaagcttatatgttactccctctggttctatattaattaattgacgttttggacaaagttaaggttaaacttttatagctttcaccatcaataactttaaaaatatttagtttaaagaaactagAaaaacatatatagatttgtctttcaaaacactataataaaagtaaacatgcatttatttatttattgtatatattataatagaaaaataaggtcaaaggtatataGTgtgtcattgtccaaagcgtcaattaaaatgaaaccggagggagtaagggtgtagcaatgactttttaaatagatctaatctaatggtctaaaataacgggcccaccaatttaagtgaaaatcaacggttagattggaaaataccatgtggcggcttaagagcgtttgtaggaacgccacatggcggcttaggagtatttgtatggagattaatggacttttagtatgtagtagataatagatagatagataagagataatagatagatagattgcttttgaaagttctactagatgtgatggacaggagtgctcaccatggaaaattcttttacaaaacaaccttctggagtcactttcacttaatggttccaggcggtaaatactgcctttgaaggtagagcaacataacgccgctatatcaagaatacgtgtagttgtaattattctactgccagaattattctcaggcaatacacacttcaagatttcccaagctgataagctccagatatcatcaatgacaattaaatacctatggcccaagttcatacaataagtccggatacgaaatagcaggaagaaataacagaaaggtagtagaaataacacaaacctcttgtcatggagaaattctctgatcttgtcaatgagttgcctctcatcatccctattaccagAagccccaagtccagaaagcaaatccaaaagaatcctcttcatgtctggcatttgagatacaaacacgaaagcagcacaatcaaactgccatttgattttctgataaacttgtttggcaagagtagttttccccaaacctccaaaccctgcgatagacaccatcttaagtcaattaacaaatccacaatcttcatcagctgcattctcccttagcaacttgataattttgtccctcggcccatcaatcccaacaagtccacctacctcggaataaAGagtctcactccggtgtcttctacctagagtagaaaaaaatctgaaccgttgatcttatttgatccaatggttcagatctatttctactaccaccacacttagtggtagtagaatcgtggaggggtacttttatccaggaaaaattatctgcggaGggatattttcgtccttcccgaatcgcgcatatggagccgatgcggagagaaccctgcggctcccatcaccaccttgacgacctcgcctgctccaccgccctcgacgcctcctacttcctcgcctccgtcgcactggctgcctcagccgccctcgacgagctcgcatctccatctgggatcgccagagctgcgccctctctgccgctcccccgcgtcggcccaccttccgacgagttcgcctcccggatctccgcctccgacccagcaccgtgccaccggccgccgccaagacctcgtccacctcgctatccccttcctcgtcgtcggcctcctccCCCAcGctcggctccagccctgtccatctccgcccgccgttgatcccacagccgcgagggcgagcccccaatccatcgcctcccaagcggaacccgcagcctccagagccaatgaccaccaatctctcgacctccgaatcatcatccaagactcctctcgctggctatagcgctgctctccaacggattagctgacatgagaagactctttttctgctttgcaagtcagatttgatttgtttttcttgctgcttgtaggtttgcagctcgaacatctgcactgaatcttcttttttgttggcctctagttctcgaatagtttttctgcttgtctacttaagttctgcagttcttggtcataatttttcctcctagaagaagggattcaagttgaatgccagtaaactgaatccggagcaagtgagcttgttcagaatggctgagcatgacaaggtggacaagctaatgatcactatgtcaatcaacgcttgagagattcctggtgtgctatgtcctgtaattcctgtgaattcattatctcaagatggctttgggtggctttggcttgttactgatggccatgtttttttttcaaaactatagcttattaacagcttgtggttttgaaagtgcctatctgtatatatcatcgtttttgtacgtggttcaatgtatattacttgttgtaattgcaattgtaaagtctacgtaaaaaacataccggattattcttccgttgccttgtatctgtcattgctggattggagtgtttcgatttgtccatcatgtgtaatattcagatatataactAatatAtttaaatttcacatgaaacaatcaagctgaatggaaaccaaatacctacagcaagaaacatctatggaacgcgatgcacaagcgccggcggtggccggacctcgcgatctgcttttctttttctttccctgcgctctcctttttgatggagagcgactctgctcttcgatggagagggatcgagcgacgcttgaccataggacgcacaaatgagaaaaaaAGttaagtgtcagatttacccctattcggttttagcactttactaatttaccctttaaaataaacggtcgagattaattctacttggagtagaatactgcaagtagagggcaccggagcgtctctccggaataaaacgctggcaggcgagggtcaatggattcacagccggtacccatggacacagatacatcaagcttatacctttttctacgatcgttcacctcgagaacttggttcttgagtttttcaatctcttgagaaatagtacagcttgagAGCagctctctcagtttcaggatattgttgatgataaatcctctgatacctgtaggctcattggatttttcactccgagccatgaaagcgtcaatggtgtcctcgatgtcgtaggccagctcccttacctctttcatccaagccttcacttgcaagtggggctcactcaacatcgcgtacttctgcatcacggtgttcatgctgctcagctcgtttcgcaggaacagcacatccttctctactgTtttcttcttggcatactctttttccagcatactggatagcttgccgaggagagactccatgactcctgtagaggcgctcaccagtgcacccgccatgaattgcctcggtttcttgacaggaaggacaatatcaacag

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CDS seq

atggcgggtgcactggtgagcgcctctacaggagtcatggagtctctcctcggcaagctatccagtatgctggaaaaagagtatgccaagaagaaaAcagtagagaaggatgtgctgttcctgcgaaacgagctgagcagcatgaacaccgtgatgcagaagtacgcgatgttgagtgagccccacttgcaagtgaaggcttggatgaaagaggtaagggagctggcctacgacatcgaggacaccattgacgctttcatggctcggagtgaaaaatccaatgagcctacaggtatcagaggatttatcatcaacaatatcctgaaactgagagagctGCTctcaagctgtactatttctcaagagattgaaaaactcaagaaccaagttctcgagccagcgagaggagtcttggatgatgattcggaggtcgagagattggtggtcattggctctggaggctgcgggttccgcttgggaggcgatggattgggggctcgccctcgcggctgtgggatcaacggcgggcggagatggacagggctggagccgagCgTGGGggaggaggccgacgacgaggaaggggatagcgaggtggacgaggtcttggcggcggccggtggcacggtgctgggtcggaggcggagatccgggaggcgaactcgtcggaaggtgggccgacgcgggggagcggcagagagggcgcagctctggcgatcccagatggagatgcgagctcgtcgagggcggctgaggcagccagtgcgacggaggcgaggaagtaggaggcgtcgagggcggtggagcaggcgaggtcgtcaagggtttggaggtttggggaaaactactcttgccaaacaagtttatcagaaaatcaaatggcagtttgattgtgctgctttcgtgtttgtatctcaaatgccagacatgaagaggattcttttggatttgctttctggacttggggctTctggtaatagggatgatgagaggcaactcattgacaagatcagagaatttctccatgacaagaggtttgtgttatttctactacctttctgttatttcttcctgctatttcgtatccggacttattgtatgaacttgggccataggtatttaattgtcattgatgatatctggagcttatcagcttgggaaatcttgaagtgtgtattgcctgagaataattctggcagtagaataattacaactacacgtattcttgatatagcggcgttatgttgctctaccttcaaaggcagtatttaccgcctggaaccattaagtgaaagtgactccagaaggtgtaacagattggaccaagtagcggagagttactttaacgagcttatcaatagaagtatgatcttacctgtgagcattgcatatgatggcagtatacaaatttgtcaagttcatgacttggttcttaacattatcatttccatgtcgaaagaagataatttcgtcacagtaatagatggacaaaagtgcagctctttgccggaaaagatccatcgactgtccctccagttcaacgattctgaagatgctgtaatcccagccaacataacaaacaaaaattctgtccgttcaatcagtgtgtttgggtctactaagcaagtaccatattttatgaatcttcaatctttgcgagtgttggacttaggttattgtacattgttacagaatcaccacattgaatgtttaggaagtatgcttcaacttaggtatctggttcttcattctcaatttatcactgaacttcctggtgaaattgggaacttgcaacatttagagatgttagatgtcacattatgttccatacaagcccttccagataccattaaactcgtgtgcctatatgtgagtactaaagcgagactaccagaaaggattggaactatgcaaagtttagaggagctgttccacatctcaagcaactcaataagattcgttgaggatcttaaatgtctgaccaaactgagagatcttgcgatttctgttgaagaccctgtcgggacagagggttataagttgcgatgcagggaagcagtgctatcatcccttactgaattgggctga

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Protein seq

MAGALVSASTGVMESLLGKLSSMLEKEYAKKKTVEKDVLFLRNELSSMNTVMQKYAMLSEPHLQVKAWMKEVRELAYDIEDTIDAFMARSEKSNEPTGIRGFIINNILKLRELLSSCTISQEIEKLKNQVLEPARGVLDDDSEVERLVVIGSGGCGFRLGGDGLGARPRGCGINGGRRWTGLEPSVGEEADDEEGDSEVDEVLAAAGGTVLGRRRRSGRRTRRKVGRRGGAAERAQLWRSQMEMRARRGRLRQPVRRRRGSRRRRGRWSRRGRQGFGGLGKTTLAKQVYQKIKWQFDCAAFVFVSQMPDMKRILLDLLSGLGASGNRDDERQLIDKIREFLHDKRFVLFLLPFCYFFLLFRIRTYCMNLGHRYLIVIDDIWSLSAWEILKCVLPENNSGSRIITTTRILDIAALCCSTFKGSIYRLEPLSESDSRRCNRLDQVAESYFNELINRSMILPVSIAYDGSIQICQVHDLVLNIIISMSKEDNFVTVIDGQKCSSLPEKIHRLSLQFNDSEDAVIPANITNKNSVRSISVFGSTKQVPYFMNLQSLRVLDLGYCTLLQNHHIECLGSMLQLRYLVLHSQFITELPGEIGNLQHLEMLDVTLCSIQALPDTIKLVCLYVSTKARLPERIGTMQSLEELFHISSNSIRFVEDLKCLTKLRDLAISVEDPVGTEGYKLRCREAVLSSLTELG

Function Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_11g0009910 OsKeNa_11g0009910.01 Chr11 9066491 9074384 - NAM
CDS seq

atggcgggtgcactggtgagcgcctctacaggagtcatggagtctctcctcggcaagctatccagtatgctggaaaaagagtatgccaagaagaaaAcagtagagaaggatgtgctgttcctgcgaaacgagctgagcagcatgaacaccgtgatgcagaagtacgcgatgttgagtgagccccacttgcaagtgaaggcttggatgaaagaggtaagggagctggcctacgacatcgaggacaccattgacgctttcatggctcggagtgaaaaatccaatgagcctacaggtatcagaggatttatcatcaacaatatcctgaaactgagagagctGCTctcaagctgtactatttctcaagagattgaaaaactcaagaaccaagttctcgagccagcgagaggagtcttggatgatgattcggaggtcgagagattggtggtcattggctctggaggctgcgggttccgcttgggaggcgatggattgggggctcgccctcgcggctgtgggatcaacggcgggcggagatggacagggctggagccgagCgTGGGggaggaggccgacgacgaggaaggggatagcgaggtggacgaggtcttggcggcggccggtggcacggtgctgggtcggaggcggagatccgggaggcgaactcgtcggaaggtgggccgacgcgggggagcggcagagagggcgcagctctggcgatcccagatggagatgcgagctcgtcgagggcggctgaggcagccagtgcgacggaggcgaggaagtaggaggcgtcgagggcggtggagcaggcgaggtcgtcaagggtttggaggtttggggaaaactactcttgccaaacaagtttatcagaaaatcaaatggcagtttgattgtgctgctttcgtgtttgtatctcaaatgccagacatgaagaggattcttttggatttgctttctggacttggggctTctggtaatagggatgatgagaggcaactcattgacaagatcagagaatttctccatgacaagaggtttgtgttatttctactacctttctgttatttcttcctgctatttcgtatccggacttattgtatgaacttgggccataggtatttaattgtcattgatgatatctggagcttatcagcttgggaaatcttgaagtgtgtattgcctgagaataattctggcagtagaataattacaactacacgtattcttgatatagcggcgttatgttgctctaccttcaaaggcagtatttaccgcctggaaccattaagtgaaagtgactccagaaggtgtaacagattggaccaagtagcggagagttactttaacgagcttatcaatagaagtatgatcttacctgtgagcattgcatatgatggcagtatacaaatttgtcaagttcatgacttggttcttaacattatcatttccatgtcgaaagaagataatttcgtcacagtaatagatggacaaaagtgcagctctttgccggaaaagatccatcgactgtccctccagttcaacgattctgaagatgctgtaatcccagccaacataacaaacaaaaattctgtccgttcaatcagtgtgtttgggtctactaagcaagtaccatattttatgaatcttcaatctttgcgagtgttggacttaggttattgtacattgttacagaatcaccacattgaatgtttaggaagtatgcttcaacttaggtatctggttcttcattctcaatttatcactgaacttcctggtgaaattgggaacttgcaacatttagagatgttagatgtcacattatgttccatacaagcccttccagataccattaaactcgtgtgcctatatgtgagtactaaagcgagactaccagaaaggattggaactatgcaaagtttagaggagctgttccacatctcaagcaactcaataagattcgttgaggatcttaaatgtctgaccaaactgagagatcttgcgatttctgttgaagaccctgtcgggacagagggttataagttgcgatgcagggaagcagtgctatcatcccttactgaattgggctga

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Protein seq

MAGALVSASTGVMESLLGKLSSMLEKEYAKKKTVEKDVLFLRNELSSMNTVMQKYAMLSEPHLQVKAWMKEVRELAYDIEDTIDAFMARSEKSNEPTGIRGFIINNILKLRELLSSCTISQEIEKLKNQVLEPARGVLDDDSEVERLVVIGSGGCGFRLGGDGLGARPRGCGINGGRRWTGLEPSVGEEADDEEGDSEVDEVLAAAGGTVLGRRRRSGRRTRRKVGRRGGAAERAQLWRSQMEMRARRGRLRQPVRRRRGSRRRRGRWSRRGRQGFGGLGKTTLAKQVYQKIKWQFDCAAFVFVSQMPDMKRILLDLLSGLGASGNRDDERQLIDKIREFLHDKRFVLFLLPFCYFFLLFRIRTYCMNLGHRYLIVIDDIWSLSAWEILKCVLPENNSGSRIITTTRILDIAALCCSTFKGSIYRLEPLSESDSRRCNRLDQVAESYFNELINRSMILPVSIAYDGSIQICQVHDLVLNIIISMSKEDNFVTVIDGQKCSSLPEKIHRLSLQFNDSEDAVIPANITNKNSVRSISVFGSTKQVPYFMNLQSLRVLDLGYCTLLQNHHIECLGSMLQLRYLVLHSQFITELPGEIGNLQHLEMLDVTLCSIQALPDTIKLVCLYVSTKARLPERIGTMQSLEELFHISSNSIRFVEDLKCLTKLRDLAISVEDPVGTEGYKLRCREAVLSSLTELG

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0265900 SBH 1.210552 0.971954 0.596717
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g16500 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os11g0265900 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0010020 RBH 0.076668 0.000000 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0009930 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0009740 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0009860 RBH 0.000000 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0139900 RBH 1.28614 0.2683665 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0009840 RBH 0.000000 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0141000 RBH 1.2125525 0.778148 0.028717
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0009970 RBH 0.000000 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0010080 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0009840 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_Ung0068700 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0009870 RBH 0.062665 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G010020 RBH 0.118653 0.0 0.160743
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0009770 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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