Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0009980 | OGI:11026280 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:9185512-9186747 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tttgaaagttctactagatgtgaatggtgaaaattcttttacaaaacaaccttctggagtcactttcacttaatggttccaggcggtaaatactgcctttgaaggtagagcaacataacgccgctatatcaagaatacgtgtagttgtaattattctactgccagaattattctcaggcaatacacacttcaagatttcccaagctgataagctccagatatcatcaatgacaattaaatacctatggcccaagttcatacaataagtccggatacgaaatagcaggaagaaataacagaaaggtagtagaaataacacaaacctcttgtcatggagaaattctctgatcttgtcaatgagttgcctctcatcatccctattaccagaagccccaagtccagaaagcaaatccaaaagaatcctcttcatgtctggcatttgagatacaaacacgaaagcagcacaatcaaactgccatttgattttctgataaacttgtttggcaagagtagttttccccaaacctccaaaccctgcgatagacaccatcttaagtcgattcacaaatccacaatcttcatcagctgcattctcccttagcaacttgataattttgtccctcggcccatcgatcccgacaagtccacctacctcggaataaaacgctggcaggcgagggtcaatggattcacagccggtacccatggacacagatacatcaagcttatacctttttctacgaccgttcacctcgagaacttggttcttgagtttttcaatctcttgagaaatagtacagcttgagagcagctctctcagtttcaggatattgttgatgataaatcctctgatacctgtaggctcattggatttttcactccgagccatgaaagcgtcaatggtgtcctcgatgtcgtaggccagctcccttacctctttcatccaagccttcacttgcaagtcgggctcactcaacatcgcgtacttctgcatcacggtgttcatgctgctcagctcgtttcgcaggaacagcacatccttctctactgttttcttcttggcatactctttttccagcatactggatagcttgccgaggagagactccatgactcctgtagaggcgctcaccagtgcacccgccatgaattgcctcggtttcttgacaggaaggacaatatcaacagctaggaaagaagataatcaagaagagttgtgtggaagagaagataatc
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| CDS seq | atggcgggtgcactggtgagcgcctctacaggagtcatggagtctctcctcggcaagctatccagtatgctggaaaaagagtatgccaagaagaaaacagtagagaaggatgtgctgttcctgcgaaacgagctgagcagcatgaacaccgtgatgcagaagtacgcgatgttgagtgagcccgacttgcaagtgaaggcttggatgaaagaggtaagggagctggcctacgacatcgaggacaccattgacgctttcatggctcggagtgaaaaatccaatgagcctacaggtatcagaggatttatcatcaacaatatcctgaaactgagagagctgctctcaagctgtactatttctcaagagattgaaaaactcaagaaccaagttctcgaggtgaacggtcgtagaaaaaggtataagcttgatgtatctgtgtccatgggtaccggctgtgaatccattgaccctcgcctgccagcgttttattccgaggtaggtggacttgtcgggatcgatgggccgagggacaaaattatcaagttgctaagggagaatgcagctgatgaagattgtggatttgtgaatcgacttaagatggtgtctatcgcagggtttggaggtttggggaaaactactcttgccaaacaagtttatcagaaaatcaaatggcagtttgattgtgctgctttcgtgtttgtatctcaaatgccagacatgaagaggattcttttggatttgctttctggacttggggcttctggtaatagggatgatgagaggcaactcattgacaagatcagagaatttctccatgacaagaggtatttaattgtcattgatgatatctggagcttatcagcttgggaaatcttgaagtgtgtattgcctgagaataattctggcagtagaataattacaactacacgtattcttgatatagcggcgttatgttgctctaccttcaaaggcagtatttaccgcctggaaccattaagtgaaagtgactccagaaggttgttttgtaaaagaattttcaccattcacatctag
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| Protein seq | MAGALVSASTGVMESLLGKLSSMLEKEYAKKKTVEKDVLFLRNELSSMNTVMQKYAMLSEPDLQVKAWMKEVRELAYDIEDTIDAFMARSEKSNEPTGIRGFIINNILKLRELLSSCTISQEIEKLKNQVLEVNGRRKRYKLDVSVSMGTGCESIDPRLPAFYSEVGGLVGIDGPRDKIIKLLRENAADEDCGFVNRLKMVSIAGFGGLGKTTLAKQVYQKIKWQFDCAAFVFVSQMPDMKRILLDLLSGLGASGNRDDERQLIDKIREFLHDKRYLIVIDDIWSLSAWEILKCVLPENNSGSRIITTTRILDIAALCCSTFKGSIYRLEPLSESDSRRLFCKRIFTIHI |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0009980 | OsLima_11g0009980.01 | Chr11 | 9185512 | 9186747 | - | NAM | ||
| CDS seq | atggcgggtgcactggtgagcgcctctacaggagtcatggagtctctcctcggcaagctatccagtatgctggaaaaagagtatgccaagaagaaaacagtagagaaggatgtgctgttcctgcgaaacgagctgagcagcatgaacaccgtgatgcagaagtacgcgatgttgagtgagcccgacttgcaagtgaaggcttggatgaaagaggtaagggagctggcctacgacatcgaggacaccattgacgctttcatggctcggagtgaaaaatccaatgagcctacaggtatcagaggatttatcatcaacaatatcctgaaactgagagagctgctctcaagctgtactatttctcaagagattgaaaaactcaagaaccaagttctcgaggtgaacggtcgtagaaaaaggtataagcttgatgtatctgtgtccatgggtaccggctgtgaatccattgaccctcgcctgccagcgttttattccgaggtaggtggacttgtcgggatcgatgggccgagggacaaaattatcaagttgctaagggagaatgcagctgatgaagattgtggatttgtgaatcgacttaagatggtgtctatcgcagggtttggaggtttggggaaaactactcttgccaaacaagtttatcagaaaatcaaatggcagtttgattgtgctgctttcgtgtttgtatctcaaatgccagacatgaagaggattcttttggatttgctttctggacttggggcttctggtaatagggatgatgagaggcaactcattgacaagatcagagaatttctccatgacaagaggtatttaattgtcattgatgatatctggagcttatcagcttgggaaatcttgaagtgtgtattgcctgagaataattctggcagtagaataattacaactacacgtattcttgatatagcggcgttatgttgctctaccttcaaaggcagtatttaccgcctggaaccattaagtgaaagtgactccagaaggttgttttgtaaaagaattttcaccattcacatctag
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| Protein seq | MAGALVSASTGVMESLLGKLSSMLEKEYAKKKTVEKDVLFLRNELSSMNTVMQKYAMLSEPDLQVKAWMKEVRELAYDIEDTIDAFMARSEKSNEPTGIRGFIINNILKLRELLSSCTISQEIEKLKNQVLEVNGRRKRYKLDVSVSMGTGCESIDPRLPAFYSEVGGLVGIDGPRDKIIKLLRENAADEDCGFVNRLKMVSIAGFGGLGKTTLAKQVYQKIKWQFDCAAFVFVSQMPDMKRILLDLLSGLGASGNRDDERQLIDKIREFLHDKRYLIVIDDIWSLSAWEILKCVLPENNSGSRIITTTRILDIAALCCSTFKGSIYRLEPLSESDSRRLFCKRIFTIHI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.406940 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0265900 | SBH | 1.210552 | 0.971954 | 0.596717 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g16470 | SBH | 0.795889 | 0.647576 | 0.148484 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0265900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0009990 | SBH | 0.857982 | 1.329975 | 0.807331 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0009880 | SBH | 0.223307 | 1.090437 | 1.887875 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0009900 | SBH | 1.635445 | 1.659052 | 3.870215 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0009710 | SBH | 0.126462 | 0.014648 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0009830 | SBH | 3.326383 | 0.760527 | 6.993272 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0139600 | RBH | 1.5579915 | 2.5652 | 0.4845945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009810 | SBH | 0.303319 | 0.000000 | 0.252842 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0141000 | RBH | 1.2125525 | 0.778148 | 0.028717 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0009940 | RBH | 0.270177 | 0.058506 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0010050 | SBH | 0.819167 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0009810 | SBH | 6.123793 | 3.048255 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0009670 | SBH | 0.485854 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009840 | SBH | 0.383860 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G009990 | SBH | 0.836855 | 0.000000 | 1.273931 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0009740 | SBH | 1.705888 | 2.393467 | 2.194195 |
