Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0015690 | OGI:01040660 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:20608081-20608695 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccgtcgaggtgcatggcggcggcgtgcggccgaaccgtgcggcggcggcggcggcggttgggagcggcggcggcggcaactcgggggcgtggcccgccccatgctggcggcggtgctggtgctggtcagcaccctgccgcctcccccgcccccgcctctgccttcgctgccgccgggccctatggcgtggctaggcctcgacggtcgggcagctgggctgccgcggtgcccttagcggccagtagcggcgcggcgcggctaggtggggcaaggaggccggacaaagggggcgccggcgggtggcaccggagccggagcggcagcgtttctggcattggtgcaggcccagatggcagtgcaaagggagttggcggcggttggtcgttttcctcgttgtcgatcggcaccctcgcccttcctagagctcctccccttctttgtggggagtttctaagctggattgaggcggcagcttgtcagtgggggaagctcaggctgctgaagcaatgccacctagtcccaggttctccttcggccagatctggcgaggaggccggtgggtggttgaacggaggggtcctgggtcagctctcagggatggtggttcgatga
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| CDS seq | atgccgtcgaggtgcatggcggcggcgtgcggccgaaccgtgcggcggcggcggcggcggttgggagcggcggcggcggcaactcgggggcgtggcccgccccatgctggcggcggtgctggtgctggtcagcaccctgccgcctcccccgcccccgcctctgccttcgctgccgccgggccctatggcgtggctaggcctcgacggtcgggcagctgggctgccgcggtgcccttagcggccagtagcggcgcggcgcggctaggtggggcaaggaggccggacaaagggggcgccggcgggtggcaccggagccggagcggcagcgtttctggcattggtgcaggcccagatggcagtgcaaagggagttggcggcggttggtcgttttcctcgttgtcgatcggcaccctcgcccttcctagagctcctccccttctttgtggggagtttctaagctggattgaggcggcagcttgtcagtgggggaagctcaggctgctgaagcaatgccacctagtcccaggttctccttcggccagatctggcgaggaggccggtgggtggttgaacggaggggtcctgggtcagctctcagggatggtggttcgatga
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| Protein seq | MPSRCMAAACGRTVRRRRRRLGAAAAATRGRGPPHAGGGAGAGQHPAASPAPASAFAAAGPYGVARPRRSGSWAAAVPLAASSGAARLGGARRPDKGGAGGWHRSRSGSVSGIGAGPDGSAKGVGGGWSFSSLSIGTLALPRAPPLLCGEFLSWIEAAACQWGKLRLLKQCHLVPGSPSARSGEEAGGWLNGGVLGQLSGMVVR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0015690 | OsNaBo_10g0015690.01 | Chr10 | 20608081 | 20608695 | + | NAM | ||
| CDS seq | atgccgtcgaggtgcatggcggcggcgtgcggccgaaccgtgcggcggcggcggcggcggttgggagcggcggcggcggcaactcgggggcgtggcccgccccatgctggcggcggtgctggtgctggtcagcaccctgccgcctcccccgcccccgcctctgccttcgctgccgccgggccctatggcgtggctaggcctcgacggtcgggcagctgggctgccgcggtgcccttagcggccagtagcggcgcggcgcggctaggtggggcaaggaggccggacaaagggggcgccggcgggtggcaccggagccggagcggcagcgtttctggcattggtgcaggcccagatggcagtgcaaagggagttggcggcggttggtcgttttcctcgttgtcgatcggcaccctcgcccttcctagagctcctccccttctttgtggggagtttctaagctggattgaggcggcagcttgtcagtgggggaagctcaggctgctgaagcaatgccacctagtcccaggttctccttcggccagatctggcgaggaggccggtgggtggttgaacggaggggtcctgggtcagctctcagggatggtggttcgatga
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| Protein seq | MPSRCMAAACGRTVRRRRRRLGAAAAATRGRGPPHAGGGAGAGQHPAASPAPASAFAAAGPYGVARPRRSGSWAAAVPLAASSGAARLGGARRPDKGGAGGWHRSRSGSVSGIGAGPDGSAKGVGGGWSFSSLSIGTLALPRAPPLLCGEFLSWIEAAACQWGKLRLLKQCHLVPGSPSARSGEEAGGWLNGGVLGQLSGMVVR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.122823 | 0.000000 | 1.276284 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0743732 | SBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35424 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0743732 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015840 | RBH | 0.000000 | 4.266885 | 0.583910 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016080 | RBH | 0.187582 | 0.000000 | 0.471358 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015470 | RBH | 0.924840 | 0.000000 | 0.601382 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015820 | RBH | 0.185455 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015760 | RBH | 0.000000 | 5.614792 | 2.331771 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015710 | RBH | 0.089603 | 0.152858 | 0.015262 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015470 | RBH | 0.035238 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015350 | RBH | 0.131598 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015780 | RBH | 0.000000 | 13.424277 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0061830 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016010 | RBH | 0.059755 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011710 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015970 | SBH | 0.000000 | 0.000000 | 0.000000 |
