Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g35424 | OGI:01040660 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:18932669-18933458 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAAGTGTGACCAAACGCCGCTAGGCCTACGGCAGCAACACATAGATGAGACTTCGAAAACGATGCCACCAAGGTGGTCACGACATGTAGGATGCTGCCATCGTCCATCTAAAAAGATGTGGTTTTCACCCAGAGAAACTCATCAAGAAGGGGAGAGGGTAACCCTTGACAGCGCCCCAAGGAGGTTACGACGCCCGAAGGCGTAGCCGCTGCCGGTCCGGTGAACCACCGGACTAGGCTTCCGCCTAGGACCCTATAGCCTTGATCGCAGATCACCGTCCACCACTCAGAACCACCACACAGACAAAAGGTAGCACGTAGCTTCCACCGCACCGCACCGACGCCCCTTCGTCGGCCGACTCCATCGAACCACCATCCCTGAGAGCTGGCCCAGGACCCCTCCGTTCCACCACCCGCCGGCCGCCTTGCCAGTTTTGGCCAAAGGAGAACCCGGGACTGGGTGACATTGCTTCGGCAGCCTGAGCTTCCCCCGCTGGCGAGCTGCTGTCTCAATCCAACCTAGAAACTCCCCGCAAAAGAAGGGGATGAGCTCTAGGAAGGGCGAGGGTGCCGACCGGCAACGAGGAAGACAACCCATCGACTCCAGCTCCCTTTGCACTACCATCTGGGCCTGCGCCAATGCCGGATACGCTGTCGCTCCGGCTCCGGCGCCACCCACCTGCACCCCCTTTGCCTGGTCTCCGCGCCCCTCCTGGCTGCGTCGCGCCGCCCAGCTGGCCGCTAAGGGCACCACGACGGCCGCCCGGCTACCGAGGCCTGGCCGCGCCAT
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| CDS seq | ATGGCGCGGCCAGGCCTCGGTAGCCGGGCGGCCGTCGTGGTGCCCTTAGCGGCCAGCTGGGCGGCGCGACGCAGCCAGGAGGGGCGCGGAGACCAGGCAAAGGGGGTGCAGGTGGGTGGCGCCGGAGCCGGAGCGACAGCGTATCCGGCATTGGCGCAGGCCCAGATGGTAGTGCAAAGGGAGCTGGAGTCGATGGGTTGTCTTCCTCGTTGCCGGTCGGCACCCTCGCCCTTCCTAGAGCTCATCCCCTTCTTTTGCGGGGAGTTTCTAGGTTGGATTGAGACAGCAGCTCGCCAGCGGGGGAAGCTCAGGCTGCCGAAGCAATGTCACCCAGTCCCGGGTTCTCCTTTGGCCAAAACTGGCAAGGCGGCCGGCGGGTGGTGGAACGGAGGGGTCCTGGGCCAGCTCTCAGGGATGGTGATGGACGATGGCAGCATCCTACATGTCGTGACCACCTTGGTGGCATCGTTTTCGAAGTCTCATCTATGTGTTGCTGCCGTAGGCCTAGCGGCGTTTGGTCACACTTAG
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| Protein seq | MARPGLGSRAAVVVPLAASWAARRSQEGRGDQAKGVQVGGAGAGATAYPALAQAQMVVQRELESMGCLPRCRSAPSPFLELIPFFCGEFLGWIETAARQRGKLRLPKQCHPVPGSPLAKTGKAAGGWWNGGVLGQLSGMVMDDGSILHVVTTLVASFSKSHLCVAAVGLAAFGHT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g35424 | LOC_Os10g35424.1 | Chr10 | 18932669 | 18933458 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGCGGCCAGGCCTCGGTAGCCGGGCGGCCGTCGTGGTGCCCTTAGCGGCCAGCTGGGCGGCGCGACGCAGCCAGGAGGGGCGCGGAGACCAGGCAAAGGGGGTGCAGGTGGGTGGCGCCGGAGCCGGAGCGACAGCGTATCCGGCATTGGCGCAGGCCCAGATGGTAGTGCAAAGGGAGCTGGAGTCGATGGGTTGTCTTCCTCGTTGCCGGTCGGCACCCTCGCCCTTCCTAGAGCTCATCCCCTTCTTTTGCGGGGAGTTTCTAGGTTGGATTGAGACAGCAGCTCGCCAGCGGGGGAAGCTCAGGCTGCCGAAGCAATGTCACCCAGTCCCGGGTTCTCCTTTGGCCAAAACTGGCAAGGCGGCCGGCGGGTGGTGGAACGGAGGGGTCCTGGGCCAGCTCTCAGGGATGGTGATGGACGATGGCAGCATCCTACATGTCGTGACCACCTTGGTGGCATCGTTTTCGAAGTCTCATCTATGTGTTGCTGCCGTAGGCCTAGCGGCGTTTGGTCACACTTAG
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| Protein seq | MARPGLGSRAAVVVPLAASWAARRSQEGRGDQAKGVQVGGAGAGATAYPALAQAQMVVQRELESMGCLPRCRSAPSPFLELIPFFCGEFLGWIETAARQRGKLRLPKQCHPVPGSPLAKTGKAAGGWWNGGVLGQLSGMVMDDGSILHVVTTLVASFSKSHLCVAAVGLAAFGHT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0497200 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0497200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016050 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0011820 | RBH | 0.000000 | 0.848780 | 0.078377 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011520 | RBH | 0.997189 | 0.000000 | 1.567714 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0011840 | RBH | 0.056285 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011580 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011630 | RBH | 0.000000 | 0.000000 | 0.048636 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011370 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011350 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015780 | RBH | 0.000000 | 13.424277 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011350 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0011840 | RBH | 0.009257 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011710 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015970 | RBH | 0.000000 | 0.000000 | 0.000000 |
