Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0011820 | OGI:01040660 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:17683712-17684978 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gccgggaaggtcgaaggaggccaaccgagtatattaagaaggaataaaagttacaagagaaaaaacatcaaaatgcaccaaggtgcattgccacacaccatgcgctaccacccaagcacaaaccgctgaGggtgaaacctagcaccaaacgacccccgttgagcgtggccgaacgccgctaggcctacagcaacaccacagagacgaggctccgaaaacgatgccaccatggtggtcacgacatccaggatgctgccatcgcccatcaaaaaagatgtagttttcacccagagaagctcgccaagaaagggagagggtaaccctcgacaacgctccaaggagattacgacgcccgaagacgtagccgctgccggcccggtgaaccaccggactaggctttcgcctggggccctacaaccttgactgcagatcgccgtccaccaactcagaaccaccacacagacaaatggcagcacgtggcatccaccacaccgcaccgacgcccctccgtcgggcgacttcaacgaaccaccacccctgaaagctggcccaggactcctccgttccaccacccgccggccgcctcgccagatttggccgaaggagaacccgggactaggtggcattgcttcggcagcctgagcttcccccactgacgagctgccgcctcaatccaacctagaaactccccgcaaagaaggggaggagctccacgaaggccgagggtgccgaccggcaacgaggaagacggcccatcgccgccagctccctttgcactgccatctggccgccggtggtgctgctgctccggaccggcgccacccgccggcgcccccgaagtccggccgccgagcctcacctggccaccgcgacggaatcccggctgcccggccaccacaccgagccgccaccgaggcctggacgacccaccgcgccatgggctggcgccgggcggccaggccgagcgagtgagcgggggcgccgttgccgcttcgggcaggcttagctgcccgccgcctccgcgcgcccgccgcctccgcgaccccgccggccacgacgagccgcggccatccgccgcccgcgcccgtcgctgacgagacgcctccacgccgagccacagctgtccgccgcctccgcgccagtgccgagccggcctagccgcagccggccgccggccgccaccacggccgcatgccgtcgcgccgccccaggcctcctcgcaccgccgccgcgtagatccaggcgagggagggccggatccggccat
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| CDS seq | atggccggatccggccctccctcgcctggatctacgcggcggcggtgcgaggaggcctggggcggcgcgacggcatgcggccgtggtggcggccggcggccggctgcggctaggccggctcggcactggcgcggaggcggcggacagctgtggctcggcgtggaggcgtctcgtcagcgacgggcgcgggcggcggatggccgcggctcgtcgtggccggcggggtcgcggaggcggcgggcgcgcggaggcggcgggcagctaagcctgcccgaagcggcaacggcgcccccgctcactcgctcggcctggccgcccggcgccagcccatggcgcggtgggtcgtccaggcctcggtggcggctcggtgtggtggccgggcagccgggattccgtcgcggtggccaggtgaggctcggcggccggacttcgggggcgccggcgggtggcgccggtccggagcagcagcaccaccggcggccagatggcagtgcaaagggagctggcggcgatgggccgtcttcctcgttgccggtcggcaccctcggccttcgtggagctcctccccttctttgcggggagtttctaggttggattgaggcggcagctcgtcagtgggggaagctcaggctgccgaagcaatgccacctagtcccgggttctccttcggccaaatctggcgaggcggccggcgggtggtggaacggaggagtcctgggccagctttcaggggtggtggttcgttga
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| Protein seq | MAGSGPPSPGSTRRRCEEAWGGATACGRGGGRRPAAARPARHWRGGGGQLWLGVEASRQRRARAADGRGSSWPAGSRRRRARGGGGQLSLPEAATAPPLTRSAWPPGASPWRGGSSRPRWRLGVVAGQPGFRRGGQVRLGGRTSGAPAGGAGPEQQHHRRPDGSAKGAGGDGPSSSLPVGTLGLRGAPPLLCGEFLGWIEAAARQWGKLRLPKQCHLVPGSPSAKSGEAAGGWWNGGVLGQLSGVVVR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0011820 | OsKeNa_10g0011820.01 | Chr10 | 17683712 | 17684978 | - | NAM | ||
| CDS seq | atggccggatccggccctccctcgcctggatctacgcggcggcggtgcgaggaggcctggggcggcgcgacggcatgcggccgtggtggcggccggcggccggctgcggctaggccggctcggcactggcgcggaggcggcggacagctgtggctcggcgtggaggcgtctcgtcagcgacgggcgcgggcggcggatggccgcggctcgtcgtggccggcggggtcgcggaggcggcgggcgcgcggaggcggcgggcagctaagcctgcccgaagcggcaacggcgcccccgctcactcgctcggcctggccgcccggcgccagcccatggcgcggtgggtcgtccaggcctcggtggcggctcggtgtggtggccgggcagccgggattccgtcgcggtggccaggtgaggctcggcggccggacttcgggggcgccggcgggtggcgccggtccggagcagcagcaccaccggcggccagatggcagtgcaaagggagctggcggcgatgggccgtcttcctcgttgccggtcggcaccctcggccttcgtggagctcctccccttctttgcggggagtttctaggttggattgaggcggcagctcgtcagtgggggaagctcaggctgccgaagcaatgccacctagtcccgggttctccttcggccaaatctggcgaggcggccggcgggtggtggaacggaggagtcctgggccagctttcaggggtggtggttcgttga
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| Protein seq | MAGSGPPSPGSTRRRCEEAWGGATACGRGGGRRPAAARPARHWRGGGGQLWLGVEASRQRRARAADGRGSSWPAGSRRRRARGGGGQLSLPEAATAPPLTRSAWPPGASPWRGGSSRPRWRLGVVAGQPGFRRGGQVRLGGRTSGAPAGGAGPEQQHHRRPDGSAKGAGGDGPSSSLPVGTLGLRGAPPLLCGEFLGWIEAAARQWGKLRLPKQCHLVPGSPSAKSGEAAGGWWNGGVLGQLSGVVVR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.848780 | 0.078377 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0743732 | SBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35424 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0743732 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011600 | RBH | 0.149941 | 1.865394 | 0.376247 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011520 | RBH | 0.997189 | 0.000000 | 1.567714 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0011840 | RBH | 0.056285 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011580 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011630 | RBH | 0.000000 | 0.000000 | 0.048636 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011370 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011350 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0011770 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011350 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0011840 | RBH | 0.009257 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011710 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0011650 | RBH | 0.000000 | 0.000000 | 0.000000 |
