Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0002390 | OGI:10009820 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:3218207-3221042 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aggataaatgacacattttattcgggaatacattacacaaattacacattacacaatattctttgctatagcatgtaggggggtcgccatagacagtgttattccaaacttttctgccatgtctacgccaccgttcttcttcactacttcaggcagtgtccactgaaactgatgaactagcgaggcaagcataacatgcagcattctatttgctaccggatatccgaggcagaaacgtcgtccggcactgaatggaataagttccatgttggtactacctgatgacaaactgatctccttttgtaggaatctctctggtataaacttgtctggttcaatccaaacctctgaattctgatgaattgcccatgtatttactatcacagtggtttctttggggattttatacccttgtatttcaactgagacggctgctttgtacattagcagtggtatggctggatgtagcctgtgtgtttccttgatgactgcttgaagatagggaagttggtcgatgtcttcttcatctatgcaagtttttgagccaatgacctttttgagctcttcttgtaattttgtcatagtttgaggattctgcagtagctcggccattgcccactctattacagctgagcttgtttcactgcccgccattagtaaatcctgaaattggttaagcaatgtaagtaatttagataaatcgaatatcttaaccaaaaagtcaatctttagggaatacactcttaaaatatatggttatttgctactgaacaccacgtacattaatcaaaatattcattttcgattgaataggagagcaaaaatagtgcgaaaggacaaatatgccaccggccttggtcatttcgctagctagtacatttgtcctttcatactatttatctctcttttatttaataaaaatgaatattttaaccaacatgatgtccctagtagtaaataaccatactttgaaagtatctttcccaaagatcaacttttagtgtccaaaaactaaaaccacttaggagccgtacgtgatgtcctcccgtaaaatttgcctttaaataaatgtgtaaataccaccaaacttatattgaaaacacacccacgtgcaaacagaccaaccagagaaaatatttaaagcctaacaaaaacctaggcagatgattatagaaatcaccttatgcataaaatatagtttgttctaaagtgttttcgctccttcgatctttatttttcatgtacctaaatagttgtaaaaaattttggaaaataactttgttagagataactctagccgtggtcactgggcttctttccacccattatgttttagtgactacgaagtctaattaatgaaaagtagccacaaactgtcatgccatgattattactatcttctataacaatcacgttgtttattgctcagtagcatttttttgcctctttgtaaaacatatgtgcatgcggtgagaaaagttacttttgggcgtggtttttctgttctgaaagggtgatgaattatccaactttttataatatgttaagatacaataatcgaacagattaactattataaagttgtaaagtaattggaaaaacatccttaacaaacttatactcctttttttaaatagatgatgtggctacctttttatatgatatttaaccattcgttttattaaaaataaataaatattattttattatgacatgttaattatgtattaaagaaattttagatatgatttatattttagaatatttatactaaaatttcaaaatatggcatacagtcaaaatataattaaaagtaaactgtataatctggtaaaaaactgagatatataggatacatatacttacggccataaatgctcttatcacaccccggttcatggtgaggctgctgtcgtcattctgctcctctttctccgacatgtccagcatcacatcaagcaggtccttctccttctccccgtgcgcggcgccacagccaccggccgtttcccggccacgcatccgccgttcgacatggccgtcgatcagttggtacatccacgtgatgtgcctcgccgtccttcgccgcaggccctgcagatcggccatggccaccaccgggaagaactccgacacgttgggcgtcatcgtcagcagcgcgaactcccgcgccgcgtcgcggaaccggcacgacgtcgcggcgtcgatgcccgccgagaacagcgccccgaacagtaggctcgccatggccgcgaacgccgccctcccgacgtcgaccaccgccgcgccgcctccgccggacgccgcagccagctccgccacgtggcggaggagaccgcgcacggcgtctcggcgcagcgggcgctgctcctcgacccgccgcggcgagaacagctgctcggcgccgagccggcgcagcgcgcgccaccggtggtggcgcgtcgggaacgcgaagatggagttgccgtcgtgcccgtcggtgcgccacgcgtccggcgtgccccggtcggtgatgctggcgccgtgcctgtgcaggacgtcgcgcgccgtggccggcgaggaggccacgacggcgagcatcgtgcccaggcggagcgtcaccagcgggccgtaccgctcggcgacgcgcgccaacgagcggtgcgggagctcaccggcgacgtcgaggaggttgccgatgaccggaagcggcctcgggcccggtggaagacggcggcgagcgtctgagagaagctggaagacatgggagcagagcagcaagagtgcaagtgaacagatgcatccggtgaagatggccattgatgaacgctggactttggagaatgaatgaacctgt
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| CDS seq | atggccatcttcaccggatgcatctgttcacttgcactcttgctgctctgctcccatgtcttccagcttctctcagacgctcgccgccgtcttccaccgggcccgaggccgcttccggtcatcggcaacctcctcgacgtcgccggtgagctcccgcaccgctcgttggcgcgcgtcgccgagcggtacggcccgctggtgacgctccgcctgggcacgatgctcgccgtcgtggcctcctcgccggccacggcgcgcgacgtcctgcacaggcacggcgccagcatcaccgaccggggcacgccggacgcgtggcgcaccgacgggcacgacggcaactccatcttcgcgttcccgacgcgccaccaccggtggcgcgcgctgcgccggctcggcgccgagcagctgttctcgccgcggcgggtcgaggagcagcgcccgctgcgccgagacgccgtgcgcggtctcctccgccacgtggcggagctggctgcggcgtccggcggaggcggcgcggcggtggtcgacgtcgggagggcggcgttcgcggccatggcgagcctactgttcggggcgctgttctcggcgggcatcgacgccgcgacgtcgtgccggttccgcgacgcggcgcgggagttcgcgctgctgacgatgacgcccaacgtgtcggagttcttcccggtggtggccatggccgatctgcagggcctgcggcgaaggacggcgaggcacatcacgtggatgtaccaactgatcgacggccatgtcgaacggcggatgcgtggccgggaaacggccggtggctgtggcgccgcgcacggggagaaggagaaggacctgcttgatgatttactaatggcgggcagtgaaacaagctcagctgtaatagagtgggcaatggccgagctactgcagaatcctcaaactatgacaaaattacaagaagagctcaaaaaggtcattggctcaaaaacttgcatagatgaagaagacatcgaccaacttccctatcttcaagcagtcatcaaggaaacacacaggctacatccagccataccactgctaatgtacaaagcagccgtctcagttgaaatacaagggtataaaatccccaaagaaaccactgtgatagtaaatacatgggcaattcatcagaattcagaggtttggattgaaccagacaagtttataccagagagattcctacaaaaggagatcagtttgtcatcaggtagtaccaacatggaacttattccattcagtgccggacgacgtttctgcctcggatatccggtagcaaatagaatgctgcatgttatgcttgcctcgctagttcatcagtttcagtggacactgcctgaagtagtgaagaagaacggtggcgtagacatggcagaaaagtttggaataacactgtctatggcgacccccctacatgctatagcaaagaatattgtgtaa
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| Protein seq | MAIFTGCICSLALLLLCSHVFQLLSDARRRLPPGPRPLPVIGNLLDVAGELPHRSLARVAERYGPLVTLRLGTMLAVVASSPATARDVLHRHGASITDRGTPDAWRTDGHDGNSIFAFPTRHHRWRALRRLGAEQLFSPRRVEEQRPLRRDAVRGLLRHVAELAAASGGGGAAVVDVGRAAFAAMASLLFGALFSAGIDAATSCRFRDAAREFALLTMTPNVSEFFPVVAMADLQGLRRRTARHITWMYQLIDGHVERRMRGRETAGGCGAAHGEKEKDLLDDLLMAGSETSSAVIEWAMAELLQNPQTMTKLQEELKKVIGSKTCIDEEDIDQLPYLQAVIKETHRLHPAIPLLMYKAAVSVEIQGYKIPKETTVIVNTWAIHQNSEVWIEPDKFIPERFLQKEISLSSGSTNMELIPFSAGRRFCLGYPVANRMLHVMLASLVHQFQWTLPEVVKKNGGVDMAEKFGITLSMATPLHAIAKNIV |
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| Function | Cytochrome P450 76T24 [UniProtKB/Swiss-Prot:W8JMV1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0002390 | OsNaBo_10g0002390.01 | Chr10 | 3218237 | 3221005 | - | NAM | ||
| CDS seq | atggccatcttcaccggatgcatctgttcacttgcactcttgctgctctgctcccatgtcttccagcttctctcagacgctcgccgccgtcttccaccgggcccgaggccgcttccggtcatcggcaacctcctcgacgtcgccggtgagctcccgcaccgctcgttggcgcgcgtcgccgagcggtacggcccgctggtgacgctccgcctgggcacgatgctcgccgtcgtggcctcctcgccggccacggcgcgcgacgtcctgcacaggcacggcgccagcatcaccgaccggggcacgccggacgcgtggcgcaccgacgggcacgacggcaactccatcttcgcgttcccgacgcgccaccaccggtggcgcgcgctgcgccggctcggcgccgagcagctgttctcgccgcggcgggtcgaggagcagcgcccgctgcgccgagacgccgtgcgcggtctcctccgccacgtggcggagctggctgcggcgtccggcggaggcggcgcggcggtggtcgacgtcgggagggcggcgttcgcggccatggcgagcctactgttcggggcgctgttctcggcgggcatcgacgccgcgacgtcgtgccggttccgcgacgcggcgcgggagttcgcgctgctgacgatgacgcccaacgtgtcggagttcttcccggtggtggccatggccgatctgcagggcctgcggcgaaggacggcgaggcacatcacgtggatgtaccaactgatcgacggccatgtcgaacggcggatgcgtggccgggaaacggccggtggctgtggcgccgcgcacggggagaaggagaaggacctgcttgatgatttactaatggcgggcagtgaaacaagctcagctgtaatagagtgggcaatggccgagctactgcagaatcctcaaactatgacaaaattacaagaagagctcaaaaaggtcattggctcaaaaacttgcatagatgaagaagacatcgaccaacttccctatcttcaagcagtcatcaaggaaacacacaggctacatccagccataccactgctaatgtacaaagcagccgtctcagttgaaatacaagggtataaaatccccaaagaaaccactgtgatagtaaatacatgggcaattcatcagaattcagaggtttggattgaaccagacaagtttataccagagagattcctacaaaaggagatcagtttgtcatcaggtagtaccaacatggaacttattccattcagtgccggacgacgtttctgcctcggatatccggtagcaaatagaatgctgcatgttatgcttgcctcgctagttcatcagtttcagtggacactgcctgaagtagtgaagaagaacggtggcgtagacatggcagaaaagtttggaataacactgtctatggcgacccccctacatgctatagcaaagaatattgtgtaa
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| Protein seq | MAIFTGCICSLALLLLCSHVFQLLSDARRRLPPGPRPLPVIGNLLDVAGELPHRSLARVAERYGPLVTLRLGTMLAVVASSPATARDVLHRHGASITDRGTPDAWRTDGHDGNSIFAFPTRHHRWRALRRLGAEQLFSPRRVEEQRPLRRDAVRGLLRHVAELAAASGGGGAAVVDVGRAAFAAMASLLFGALFSAGIDAATSCRFRDAAREFALLTMTPNVSEFFPVVAMADLQGLRRRTARHITWMYQLIDGHVERRMRGRETAGGCGAAHGEKEKDLLDDLLMAGSETSSAVIEWAMAELLQNPQTMTKLQEELKKVIGSKTCIDEEDIDQLPYLQAVIKETHRLHPAIPLLMYKAAVSVEIQGYKIPKETTVIVNTWAIHQNSEVWIEPDKFIPERFLQKEISLSSGSTNMELIPFSAGRRFCLGYPVANRMLHVMLASLVHQFQWTLPEVVKKNGGVDMAEKFGITLSMATPLHAIAKNIV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0002390 | OsNaBo_10g0002390.02 | Chr10 | 3218207 | 3221042 | - | IsoSeq | ||
| CDS seq | aggttcattcattctccaaagtccagcgttcatcaatggccatcttcaccggatgcatctgttcacttgcactcttgctgctctgctcccatgtcttccagcttctctcagacgctcgccgccgtcttccaccgggcccgaggccgcttccggtcatcggcaacctcctcgacgtcgccggtgagctcccgcaccgctcgttggcgcgcgtcgccgagcggtacggcccgc
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| Protein seq | RFIHSPKSSVHQWPSSPDASVHLHSCCSAPMSSSFSQTLAAVFHRARGRFRSSATSSTSPVSSRTARWRASPSGTAR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr10 | 3218869 | 3220160 | - | OsNaBo_10g0002390.02 | OsNaBo_10g0002390.02,OsNaBo_10g0002390.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 7.208279 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0144700 | RBH | 1.031162 | 1.055241 | 2.898206 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g05490 | RBH | 0.718837 | 0.732840 | 0.764687 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0144700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0002420 | RBH | 0.000000 | 0.0 | 0.420284 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0002390 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0002330 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0002550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002260 | RBH | 0.000000 | 0.000000 | 6.332271 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0045600 | RBH | 0.705374 | 0 | 0.096186 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0002520 | RBH | 0.000000 | 0.000000 | 0.479052 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0051700 | RBH | 0.2188115 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0002340 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0002360 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0002440 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0002260 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0002450 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G002420 | RBH | 0.0 | 0.0 | 1.841467 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006260 | RBH | 0.0 | 0.0 | 0.635802 |
