Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsZS97_10G0051700		OGI:10009820 \| 16/16			Zhenshan 97 \| ZS97RS3 \| HZAU			Chr10:3125254-3128278		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		AGGATAAATGACACATTTTATTCGGGAATACATTACACAAATTACACATTACACAATATTCTTTGCTATAGCATGTAGGGGGGTCGCCATAGACAGTGTTATTCCAAACTTTTCTGCCATGTCTACGCCACCGTTCTTCTTCACTACTTCAGGCAGTGTCCACTGAAACTGATGAACTAGCGAGGCAAGCATAACATGCAGCATTCTATTTGCTACCGGATATCCGAGGCAGAAACGTCGTCCGGCACTGAATGGAATAAGTTCTATGTTGGTACTACCTGATGACAAACTGATCTCCTTTTGTAGGAATCTCTCTGGTATAAACTTGTCTGGTTCAATCCAAACCTCTGAATTCTGATGAATTGCCCATGTATTTACTATCACAGTGGTTTCTTTGGGGATTTTATACCCTTGTATTTCAACTGGGACGGCTGCTTTGTACATTAGCAGTGGTATGGCTGGATGTAGCCTGTGTGTTTCCTTGATGACTGCTTGAAGATAGGGAAGTTGGTCGATGTCTTCTTCATCTATGCAAGTTTTTGAGCCAATGACCTTTTTGAGCTCTTCTTGTAATTTTGTCATAGTTTGAGGATTCTGCAGTAGCTCGGCCATTGCCCACTCTATTACAGCTGAGCTTGTTTCACTGCCCGCCATTAGTAAATCCTGAAATTGGTTAAGCAATGTAAGTAATTTAGATAAATCGAATATCTTAACCAAAAAGTCAATCTTTAGGGAATACACTCTTAAAATATATGGTTATTTGCTACTGAACACCACATACATTAATCAAAATATTCATTTTCGATTGAATAGGAGAGCAAAAATAGTGCGAAAGGACAAATATGCCACCAGCCTTGGTCATTTCGCTAGCTAGTACATTTGTCCTTTCATACTATTTATCTCTCTTTTATTTAATAAAAATGAATATTTTAACCAACATGATGTCCCTAGTGGTAAATAACTATACTTTGAAAGTATCTTTCCCAAAGATCAACTTTTAGTGTCCAAAAGCTAAAACCACTTAGGAGCCGTACGTGATGTCCTCCCGTAAAATTTGCCTTTAAATAAATGTGTAAATACCACCAAACTTATATTGAAAACACACCCACGTGCAAGCAGACCAACCCAGAGAAAATATTTAAAGCCTTACAAAAACCTAGGCAGATGATTATAGAAATCACCTTATGCATAAAATATAGTTTGTTCTAAAGTGTTTTCGCTCCTTCAATCTTTATTTTTCATGTACCTAAATAGTTGTAAAAAATTTTGGAAAATAACTTTGTTAGAGATAACTCTAGCCGTGGTCACTGGGCTTCCGTCCACCCATTATGTTTTAGTGACTACGAAGTCTAATTAATGAAAAGTAGCCACAAACTGTCATGCCATGATTATTACTATCTTCTATAACAATCACGTTGTTTATTGCTCAGTAGCATTTTTTTGCCTCTTTGTAAAACATATGTGCATGCGGTGAGAAAAGTTACTTTTGGGCGTGGTTTTTCTGTTCTGAAAGGGTGATGAATTATCCAACTTTTTATAATATGTTAAGATACAATAATCGAACAGATTAACTATTATAAAGTTGTAAAGTAATTGGAAAAACATCCTTAACAAACTTATACTCCTTTTTTAAAATAGATGATGTGGCTACCTTTTTATATGATATTTAACCATTCGTTTTATTAAAAATAAATAAATATTATTTTATTATGACATGTTAATTATGTATTAAAGAAATTTTAGATATGATTTATATTTTAGAATATTTATACTAAAATTTCAAAATATGGCATACAGTCAAAATATAATTAAAAGTAAACTGTATAATCTGGTAAAAAACTGAGATATATAGGATACATATACTTACGGCCATAAATGCTCTTATCACACCCCGGTTCATGGTGAGGCTGCTGTCGTCATTCTGTTCCTCTTTCTCCGACATGTCCAGCATCACATCAAGCAGGTCCTTCTCCTTCTCCCCGTGCGCGGCGCCGCAGCCACCGGCCGTTTCCCGGCCACGCATCCGCCGTTCGACATGGCCGTCGATCAGTTGGTACATCCACGTGATGTGCCTCGCCGTCCTTCGCCGCAGGCCCTGCAGATCGGCCATGGCCACCACCGGGAAGAACTCCGACACGTTGGGCGTCATCGTCAGCAGCGCGAACTCCCGCGCCGCGTCGCGGAACCGGCACGACGTCGCGGCGTCGATGCCCGCCGAGAACAGCGCCCCGAACAGTAGGCTCGCCATGGCCGCGAAAGCCGCCCTCCCGACGTCGACCACCGCCGCGCCGCCTCCGCCGGACGCCGCAGCCAGCTCCGCCACGTGGCGGAGGAGGCCGCGCACGGCGTCTCGGCGCAGCGGGCGCTGCTCCTCAACCCGCCGCGGCGAGAACAGCTGCTCGGCGCCGAGCCGGCGCAGCGCGCGCCACCGGTGGTGGCGCGTCGGGAACGCGAAGATGGAGTTGCTGTCGTGCCCGTCGGTGCTCCACGCGTCCGGCGTGCCCCGGTCGGTGATGCTGGCGCCGTGCCTGTGCAGGACGTCGCGCGCCGTGGCCGGCGAGGAGGCCACGACGGCGAGCATCGTGCCCAGGCGGAGCGTCACCAGCGGGCCGTACCGCTCGGCGACGCACGCCAACGAGCGGTGCGGGAGCTCACCGGCGACGTCGAGGAGGTTGCCGATGACCGGAAGCGGCCTCGGGCCCGGTGGAAGACGGCGGCGAGCGTCTGAGAGAAGCTGGAAGACATGGGAGCAGAGCAGCAAGAGTGCAAGTGAACAGATGCATCCGATGAAGATGGCCATTGATGAACGCTGGACTTTGGAGAATGAATGAACCTGTACTGCCGATCGATCTCGATCCATATGGAAATATAAAAGCATTACCCGTTGAAGAGTATGCGTTTTATGATTTGATGTGAAGAGACACCGTGACAGAAATTAAGAGGACAATAATTTAACTGAACATTTTCGCTTGAGTCGTGTACTAGGCTTTCATCTGTTGGCCTCTTTTGATGGAGAAGCTAGCAG More
CDS seq		ATGCTTTTATATTTCCATATGGATCGAGATCGATCGGCAGTACAGGTTCATTCATTCTCCAAAGTCCAGCGTTCATCAATGGCCATCTTCATCGGATGCATCTGTTCACTTGCACTCTTGCTGCTCTGCTCCCATGTCTTCCAGCTTCTCTCAGACGCTCGCCGCCGTCTTCCACCGGGCCCGAGGCCGCTTCCGGTCATCGGCAACCTCCTCGACGTCGCCGGTGAGCTCCCGCACCGCTCGTTGGCGTGCGTCGCCGAGCGGTACGGCCCGCTGGTGACGCTCCGCCTGGGCACGATGCTCGCCGTCGTGGCCTCCTCGCCGGCCACGGCGCGCGACGTCCTGCACAGGCACGGCGCCAGCATCACCGACCGGGGCACGCCGGACGCGTGGAGCACCGACGGGCACGACAGCAACTCCATCTTCGCGTTCCCGACGCGCCACCACCGGTGGCGCGCGCTGCGCCGGCTCGGCGCCGAGCAGCTGTTCTCGCCGCGGCGGGTTGAGGAGCAGCGCCCGCTGCGCCGAGACGCCGTGCGCGGCCTCCTCCGCCACGTGGCGGAGCTGGCTGCGGCGTCCGGCGGAGGCGGCGCGGCGGTGGTCGACGTCGGGAGGGCGGCTTTCGCGGCCATGGCGAGCCTACTGTTCGGGGCGCTGTTCTCGGCGGGCATCGACGCCGCGACGTCGTGCCGGTTCCGCGACGCGGCGCGGGAGTTCGCGCTGCTGACGATGACGCCCAACGTGTCGGAGTTCTTCCCGGTGGTGGCCATGGCCGATCTGCAGGGCCTGCGGCGAAGGACGGCGAGGCACATCACGTGGATGTACCAACTGATCGACGGCCATGTCGAACGGCGGATGCGTGGCCGGGAAACGGCCGGTGGCTGCGGCGCCGCGCACGGGGAGAAGGAGAAGGACCTGCTTGATGTGATGCTGGACATGTCGGAGAAAGAGGAACAGAATGACGACAGCAGCCTCACCATGAACCGGGGTGTGATAAGAGCATTTATGGCCGATTTACTAATGGCGGGCAGTGAAACAAGCTCAGCTGTAATAGAGTGGGCAATGGCCGAGCTACTGCAGAATCCTCAAACTATGACAAAATTACAAGAAGAGCTCAAAAAGGTCATTGGCTCAAAAACTTGCATAGATGAAGAAGACATCGACCAACTTCCCTATCTTCAAGCAGTCATCAAGGAAACACACAGGCTACATCCAGCCATACCACTGCTAATGTACAAAGCAGCCGTCCCAGTTGAAATACAAGGGTATAAAATCCCCAAAGAAACCACTGTGATAGTAAATACATGGGCAATTCATCAGAATTCAGAGGTTTGGATTGAACCAGACAAGTTTATACCAGAGAGATTCCTACAAAAGGAGATCAGTTTGTCATCAGGTAGTACCAACATAGAACTTATTCCATTCAGTGCCGGACGACGTTTCTGCCTCGGATATCCGGTAGCAAATAGAATGCTGCATGTTATGCTTGCCTCGCTAGTTCATCAGTTTCAGTGGACACTGCCTGAAGTAGTGAAGAAGAACGGTGGCGTAGACATGGCAGAAAAGTTTGGAATAACACTGTCTATGGCGACCCCCCTACATGCTATAGCAAAGAATATTGTGTAA More
Protein seq		MLLYFHMDRDRSAVQVHSFSKVQRSSMAIFIGCICSLALLLLCSHVFQLLSDARRRLPPGPRPLPVIGNLLDVAGELPHRSLACVAERYGPLVTLRLGTMLAVVASSPATARDVLHRHGASITDRGTPDAWSTDGHDSNSIFAFPTRHHRWRALRRLGAEQLFSPRRVEEQRPLRRDAVRGLLRHVAELAAASGGGGAAVVDVGRAAFAAMASLLFGALFSAGIDAATSCRFRDAAREFALLTMTPNVSEFFPVVAMADLQGLRRRTARHITWMYQLIDGHVERRMRGRETAGGCGAAHGEKEKDLLDVMLDMSEKEEQNDDSSLTMNRGVIRAFMADLLMAGSETSSAVIEWAMAELLQNPQTMTKLQEELKKVIGSKTCIDEEDIDQLPYLQAVIKETHRLHPAIPLLMYKAAVPVEIQGYKIPKETTVIVNTWAIHQNSEVWIEPDKFIPERFLQKEISLSSGSTNIELIPFSAGRRFCLGYPVANRMLHVMLASLVHQFQWTLPEVVKKNGGVDMAEKFGITLSMATPLHAIAKNIV
Function		Cytochrome P450 76T24 [UniProtKB/Swiss-Prot:W8JMV1]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_10G0051700	OsZS97_10T0051700.1	Chr10	3125254	3128278	-	makerRMon
CDS seq	ATGCTTTTATATTTCCATATGGATCGAGATCGATCGGCAGTACAGGTTCATTCATTCTCCAAAGTCCAGCGTTCATCAATGGCCATCTTCATCGGATGCATCTGTTCACTTGCACTCTTGCTGCTCTGCTCCCATGTCTTCCAGCTTCTCTCAGACGCTCGCCGCCGTCTTCCACCGGGCCCGAGGCCGCTTCCGGTCATCGGCAACCTCCTCGACGTCGCCGGTGAGCTCCCGCACCGCTCGTTGGCGTGCGTCGCCGAGCGGTACGGCCCGCTGGTGACGCTCCGCCTGGGCACGATGCTCGCCGTCGTGGCCTCCTCGCCGGCCACGGCGCGCGACGTCCTGCACAGGCACGGCGCCAGCATCACCGACCGGGGCACGCCGGACGCGTGGAGCACCGACGGGCACGACAGCAACTCCATCTTCGCGTTCCCGACGCGCCACCACCGGTGGCGCGCGCTGCGCCGGCTCGGCGCCGAGCAGCTGTTCTCGCCGCGGCGGGTTGAGGAGCAGCGCCCGCTGCGCCGAGACGCCGTGCGCGGCCTCCTCCGCCACGTGGCGGAGCTGGCTGCGGCGTCCGGCGGAGGCGGCGCGGCGGTGGTCGACGTCGGGAGGGCGGCTTTCGCGGCCATGGCGAGCCTACTGTTCGGGGCGCTGTTCTCGGCGGGCATCGACGCCGCGACGTCGTGCCGGTTCCGCGACGCGGCGCGGGAGTTCGCGCTGCTGACGATGACGCCCAACGTGTCGGAGTTCTTCCCGGTGGTGGCCATGGCCGATCTGCAGGGCCTGCGGCGAAGGACGGCGAGGCACATCACGTGGATGTACCAACTGATCGACGGCCATGTCGAACGGCGGATGCGTGGCCGGGAAACGGCCGGTGGCTGCGGCGCCGCGCACGGGGAGAAGGAGAAGGACCTGCTTGATGTGATGCTGGACATGTCGGAGAAAGAGGAACAGAATGACGACAGCAGCCTCACCATGAACCGGGGTGTGATAAGAGCATTTATGGCCGATTTACTAATGGCGGGCAGTGAAACAAGCTCAGCTGTAATAGAGTGGGCAATGGCCGAGCTACTGCAGAATCCTCAAACTATGACAAAATTACAAGAAGAGCTCAAAAAGGTCATTGGCTCAAAAACTTGCATAGATGAAGAAGACATCGACCAACTTCCCTATCTTCAAGCAGTCATCAAGGAAACACACAGGCTACATCCAGCCATACCACTGCTAATGTACAAAGCAGCCGTCCCAGTTGAAATACAAGGGTATAAAATCCCCAAAGAAACCACTGTGATAGTAAATACATGGGCAATTCATCAGAATTCAGAGGTTTGGATTGAACCAGACAAGTTTATACCAGAGAGATTCCTACAAAAGGAGATCAGTTTGTCATCAGGTAGTACCAACATAGAACTTATTCCATTCAGTGCCGGACGACGTTTCTGCCTCGGATATCCGGTAGCAAATAGAATGCTGCATGTTATGCTTGCCTCGCTAGTTCATCAGTTTCAGTGGACACTGCCTGAAGTAGTGAAGAAGAACGGTGGCGTAGACATGGCAGAAAAGTTTGGAATAACACTGTCTATGGCGACCCCCCTACATGCTATAGCAAAGAATATTGTGTAA More
Protein seq	MLLYFHMDRDRSAVQVHSFSKVQRSSMAIFIGCICSLALLLLCSHVFQLLSDARRRLPPGPRPLPVIGNLLDVAGELPHRSLACVAERYGPLVTLRLGTMLAVVASSPATARDVLHRHGASITDRGTPDAWSTDGHDSNSIFAFPTRHHRWRALRRLGAEQLFSPRRVEEQRPLRRDAVRGLLRHVAELAAASGGGGAAVVDVGRAAFAAMASLLFGALFSAGIDAATSCRFRDAAREFALLTMTPNVSEFFPVVAMADLQGLRRRTARHITWMYQLIDGHVERRMRGRETAGGCGAAHGEKEKDLLDVMLDMSEKEEQNDDSSLTMNRGVIRAFMADLLMAGSETSSAVIEWAMAELLQNPQTMTKLQEELKKVIGSKTCIDEEDIDQLPYLQAVIKETHRLHPAIPLLMYKAAVPVEIQGYKIPKETTVIVNTWAIHQNSEVWIEPDKFIPERFLQKEISLSSGSTNIELIPFSAGRRFCLGYPVANRMLHVMLASLVHQFQWTLPEVVKKNGGVDMAEKFGITLSMATPLHAIAKNIV More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_10G0051700	OsZS97_10T0051700.2	Chr10	3125254	3128278	-	makerRMon
CDS seq	ATGCTTTTATATTTCCATATGGATCGAGATCGATCGGCAGTACAGCTTCTCTCAGACGCTCGCCGCCGTCTTCCACCGGGCCCGAGGCCGCTTCCGGTCATCGGCAACCTCCTCGACGTCGCCGGTGAGCTCCCGCACCGCTCGTTGGCGTGCGTCGCCGAGCGGTACGGCCCGCTGGTGACGCTCCGCCTGGGCACGATGCTCGCCGTCGTGGCCTCCTCGCCGGCCACGGCGCGCGACGTCCTGCACAGGCACGGCGCCAGCATCACCGACCGGGGCACGCCGGACGCGTGGAGCACCGACGGGCACGACAGCAACTCCATCTTCGCGTTCCCGACGCGCCACCACCGGTGGCGCGCGCTGCGCCGGCTCGGCGCCGAGCAGCTGTTCTCGCCGCGGCGGGTTGAGGAGCAGCGCCCGCTGCGCCGAGACGCCGTGCGCGGCCTCCTCCGCCACGTGGCGGAGCTGGCTGCGGCGTCCGGCGGAGGCGGCGCGGCGGTGGTCGACGTCGGGAGGGCGGCTTTCGCGGCCATGGCGAGCCTACTGTTCGGGGCGCTGTTCTCGGCGGGCATCGACGCCGCGACGTCGTGCCGGTTCCGCGACGCGGCGCGGGAGTTCGCGCTGCTGACGATGACGCCCAACGTGTCGGAGTTCTTCCCGGTGGTGGCCATGGCCGATCTGCAGGGCCTGCGGCGAAGGACGGCGAGGCACATCACGTGGATGTACCAACTGATCGACGGCCATGTCGAACGGCGGATGCGTGGCCGGGAAACGGCCGGTGGCTGCGGCGCCGCGCACGGGGAGAAGGAGAAGGACCTGCTTGATGTGATGCTGGACATGTCGGAGAAAGAGGAACAGAATGACGACAGCAGCCTCACCATGAACCGGGGTGTGATAAGAGCATTTATGGCCGATTTACTAATGGCGGGCAGTGAAACAAGCTCAGCTGTAATAGAGTGGGCAATGGCCGAGCTACTGCAGAATCCTCAAACTATGACAAAATTACAAGAAGAGCTCAAAAAGGTCATTGGCTCAAAAACTTGCATAGATGAAGAAGACATCGACCAACTTCCCTATCTTCAAGCAGTCATCAAGGAAACACACAGGCTACATCCAGCCATACCACTGCTAATGTACAAAGCAGCCGTCCCAGTTGAAATACAAGGGTATAAAATCCCCAAAGAAACCACTGTGATAGTAAATACATGGGCAATTCATCAGAATTCAGAGGTTTGGATTGAACCAGACAAGTTTATACCAGAGAGATTCCTACAAAAGGAGATCAGTTTGTCATCAGGTAGTACCAACATAGAACTTATTCCATTCAGTGCCGGACGACGTTTCTGCCTCGGATATCCGGTAGCAAATAGAATGCTGCATGTTATGCTTGCCTCGCTAGTTCATCAGTTTCAGTGGACACTGCCTGAAGTAGTGAAGAAGAACGGTGGCGTAGACATGGCAGAAAAGTTTGGAATAACACTGTCTATGGCGACCCCCCTACATGCTATAGCAAAGAATATTGTGTAA More
Protein seq	MLLYFHMDRDRSAVQLLSDARRRLPPGPRPLPVIGNLLDVAGELPHRSLACVAERYGPLVTLRLGTMLAVVASSPATARDVLHRHGASITDRGTPDAWSTDGHDSNSIFAFPTRHHRWRALRRLGAEQLFSPRRVEEQRPLRRDAVRGLLRHVAELAAASGGGGAAVVDVGRAAFAAMASLLFGALFSAGIDAATSCRFRDAAREFALLTMTPNVSEFFPVVAMADLQGLRRRTARHITWMYQLIDGHVERRMRGRETAGGCGAAHGEKEKDLLDVMLDMSEKEEQNDDSSLTMNRGVIRAFMADLLMAGSETSSAVIEWAMAELLQNPQTMTKLQEELKKVIGSKTCIDEEDIDQLPYLQAVIKETHRLHPAIPLLMYKAAVPVEIQGYKIPKETTVIVNTWAIHQNSEVWIEPDKFIPERFLQKEISLSSGSTNIELIPFSAGRRFCLGYPVANRMLHVMLASLVHQFQWTLPEVVKKNGGVDMAEKFGITLSMATPLHAIAKNIV More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.2188115	0	0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_10g0144700	RBH	1.031162	1.055241	2.898206
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os10g05490	RBH	0.718837	0.732840	0.764687
Nipponbare \| IRGSP 1.0 \| RAP-db	Os10g0144700	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_10g0002420	RBH	0.000000	0.0	0.420284
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_10g0002390	RBH	0.000000	0.000000	0.000000
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_10g0002330	RBH	0.0	0.000000	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_10g0002550	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_10g0002260	RBH	0.000000	0.000000	6.332271
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_10G0045600	RBH	0.705374	0	0.096186
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_10g0002520	RBH	0.000000	0.000000	0.479052
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_10G0047400	RBH	1.29798	3.879731	1.4507075
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_10g0002340	RBH	0.000000	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_10g0002360	RBH	0.000000	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_10g0002440	RBH	0.000000	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_10g0002260	RBH	0.0	0.0	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_10g0002450	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_10G002420	RBH	0.0	0.0	1.841467
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_10g0002390	RBH	0.0	0.0	7.208279

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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