Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0005260 | OGI:09025750 | 14/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:8795039-8796773 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcactcaagagttgcccccttgccccagagctggtcagacatgagtgtgcatgccttgatatgtgcctccctggcccatggctccatggagctagtgtcaacagaaatcatctgggtgaacttgtcgagcatcttggtctgttggtcaatcagcttggccttggtcttctccttagcagcctgcagattcagggtggctgcctcaaccttctccccagagagcttctgctggaaatccttcatggaagctgtttcttcttgttggctagcgtgggctttgcacagatgcttgatgagctctgccaactcagctgagtagtctgattgcctgcccttctttgccctcttgatacccacaggcctcacctgagccggctgctcctcaaccggtggtgcattcacatcgaactcagccctgatcttccttggaccatgacccagcagacaaatgtgagcattccacttggggaaatcacacacggccttccaccagtagcctagtgtaaaggggtgaccctccctactctggtacagctccatagcttggtccattagcatttcttcagaccggccactttggtagttatccctcagctgcacatagatcccattgaatgctgaaaccttccttgtgtgtttgtgccaatggcccttgaggtgcttggggtcccttttcctgtcatcttctgtggttgcattgtaggtatctgcaacctgcctccagtatgtgtcacccttccttgcattcccctcgattggatctgttgagttctcaagccaagcactgacctacataccatcaaatgctcaacaaatacccaacaaatgcataatactcattggtaataacatcagcaaacattatgaccaatacatgttctagtttctgccaaaaattggaaatttcaccaataatcagtaaccttactatacacacatattcttggctgcaagaacataactaaaataaatccaaaggcacatcaaggagcaaattatttctagctaccacaaccttttcatttatgccaacatattttaactttgactcatcataaattcaacaaaacatatagacatacattgtgcatgcatcacaaaggttactgcttcttctctgtgaacaggtcaatgttatgtaggcaaacacatgtacataaatcacactaccatatataccacccataaagaagcaaaatttcctacacatggatactactgcttctcatcagtttgcaaaactagatttttttctatgcatcccaaactatatcaatcagtctcatacaaaaaccaacaagcacacaaatttctacatacaacaagcacacaaatttctacatgtttcagctctgttcatgctccatccaaatcaagTttttttttgcaactacttcagatctgggcatcaaatatttggattgtgataaaagatgcttaccaggcgtaggtcctcatcacgagtgtagtacatcctcgccttcccatcgtcttggctgactggatttgcctgcacacattgcctcaccccacatctggaggccgctgtcgggccaccattgccggctgctgctggtggtggctgggtagagaagagggggaactgagcatgagcgtaggggaagtcgttgtgcggatgagagaaatcgccttgggtggaggcttgaccaaacgggtgcgccagatcgggatcattcaagaaatcgtagtacccacttgagcggttcggatccat
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| CDS seq | atggatccgaaccgctcaagtgggtactacgatttcttgaatgatcccgatctggcgcacccgtttggtcaagcctccacccaaggcgatttctctcatccgcacaacgacttcccctacgctcatgctcagttccccctcttctctacccagccaccaccagcagcagccggcaatggtggcccgacagcggcctccagatgtggggtgaggcaatgtgtgcaggcaaatccagtcagccaagacgatgggaaggcgaggatgtactacactcgtgatgaggacctacgcctgctgagggataactaccaaagtggccggtctgaagaaatgctaatggaccaagctatggagctgtaccagagtagggagggtcacccctttacactaggctactggtggaaggccgtgtgtgatttccccaagtggaatgctcacatttgtctgctgggtcatggtccaaggaagatcagggctgagttcgatgtgaatgcaccaccggttgaggagcagccggctcaggtgaggcctgtgggtatcaagagggcaaagaagggcaggcaatcagactactcagctgagttggcagagctcatcaagcatctgtgcaaagcccacgctagccaacaagaagaaacagcttccatgaaggatttccagcagaagctctctggggagaaggttgaggcagccaccctgaatctgcaggctgctaaggagaagaccaaggccaagctgattgaccaacagaccaagatgctcgacaagttcacccagatgatttctgttgacactagctccatggagccatgggccagggaggcacatatcaaggcatgcacactcatgtctgaccagctctggggcaagggggcaactcttgagtga
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| Protein seq | MDPNRSSGYYDFLNDPDLAHPFGQASTQGDFSHPHNDFPYAHAQFPLFSTQPPPAAAGNGGPTAASRCGVRQCVQANPVSQDDGKARMYYTRDEDLRLLRDNYQSGRSEEMLMDQAMELYQSREGHPFTLGYWWKAVCDFPKWNAHICLLGHGPRKIRAEFDVNAPPVEEQPAQVRPVGIKRAKKGRQSDYSAELAELIKHLCKAHASQQEETASMKDFQQKLSGEKVEAATLNLQAAKEKTKAKLIDQQTKMLDKFTQMISVDTSSMEPWAREAHIKACTLMSDQLWGKGATLE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0005260 | OsNaBo_09g0005260.01 | Chr09 | 8795039 | 8796773 | - | NAM | ||
| CDS seq | atggatccgaaccgctcaagtgggtactacgatttcttgaatgatcccgatctggcgcacccgtttggtcaagcctccacccaaggcgatttctctcatccgcacaacgacttcccctacgctcatgctcagttccccctcttctctacccagccaccaccagcagcagccggcaatggtggcccgacagcggcctccagatgtggggtgaggcaatgtgtgcaggcaaatccagtcagccaagacgatgggaaggcgaggatgtactacactcgtgatgaggacctacgcctgctgagggataactaccaaagtggccggtctgaagaaatgctaatggaccaagctatggagctgtaccagagtagggagggtcacccctttacactaggctactggtggaaggccgtgtgtgatttccccaagtggaatgctcacatttgtctgctgggtcatggtccaaggaagatcagggctgagttcgatgtgaatgcaccaccggttgaggagcagccggctcaggtgaggcctgtgggtatcaagagggcaaagaagggcaggcaatcagactactcagctgagttggcagagctcatcaagcatctgtgcaaagcccacgctagccaacaagaagaaacagcttccatgaaggatttccagcagaagctctctggggagaaggttgaggcagccaccctgaatctgcaggctgctaaggagaagaccaaggccaagctgattgaccaacagaccaagatgctcgacaagttcacccagatgatttctgttgacactagctccatggagccatgggccagggaggcacatatcaaggcatgcacactcatgtctgaccagctctggggcaagggggcaactcttgagtga
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| Protein seq | MDPNRSSGYYDFLNDPDLAHPFGQASTQGDFSHPHNDFPYAHAQFPLFSTQPPPAAAGNGGPTAASRCGVRQCVQANPVSQDDGKARMYYTRDEDLRLLRDNYQSGRSEEMLMDQAMELYQSREGHPFTLGYWWKAVCDFPKWNAHICLLGHGPRKIRAEFDVNAPPVEEQPAQVRPVGIKRAKKGRQSDYSAELAELIKHLCKAHASQQEETASMKDFQQKLSGEKVEAATLNLQAAKEKTKAKLIDQQTKMLDKFTQMISVDTSSMEPWAREAHIKACTLMSDQLWGKGATLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0241700 | SBH | 1.974602 | 1.154738 | 5.685786 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g14260 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0241700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015640 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005360 | SBH | 0.000000 | 0.317273 | 0.576999 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005100 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005310 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0150100 | RBH | 0 | 0 | 0.0908325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005470 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0137700 | SBH | 1.09664 | 2.2545425 | 11.420856 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0011080 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0010890 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0011000 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0010800 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0010870 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G011380 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0005040 | SBH | 0.613982 | 8.106830 | 7.484203 |
