Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0241700 | OGI:09009360 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:3141875-3147468 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGGATCACGCTTTCCATCCGTATCGCCCTCCCCGTCCGCATCGCCCTCCTCTCCAGATCCCCTTCCTCTCTCTCGATCGCCGCCGCCTCCTCGATTCTCAGCGCGCGACGCAATCTATCCCCCCGGCTCCCGCGCTTCTCCCCTCCCTCCCGCGCGGTTCCCGCGCTTCTCCTCTCCCTCTCCCGCTCGCGAAATTGCCTACCTATATGACAGAGAAATCCAGTTGCTCCAAAATTCCCCATCGCCATATTCCGCCGCTTCCGATCTCCCTCTTCCGCCGGCCACCGAATCGACAGCCACCTCGACCACAGACCCGCTCCTCTTCCACCTTGTATAATCTCTCCCGCCCCCGCAAGAAATTCCTGCCTAAAACCCTAGTTCCCCACCACCAACACCATGTCTCGTCGGAGGAAGAGGGAGGTAGCGCCGCCTCCTCAGGCCGTCGTGAGCTCTACTGCTCCATTCGCTGTTCCTACGTCGCAGGCAGCGCCATATCCATATGGGGGTCTCGGGTTCCCGCCGCCACCGACAGCTTGGCTTGCTTCTCCACAGCCACAAGCCATGCCTGGCTCTTCTGCTTTCCATCCTCCTGCGGCCGGCAAGACTGATGTGCATCCTGATCTTGAAGAATGGTATGTCTGTCAATTGGCTTTGTTAGTTCTGAATTTGCCATGCTGATTACTCCTTTTAGTGCTAAATAAAAAAAAAGAGCATGTACTGATTTACTTATTTAAGTGATGTTTCTTTGAAAAACAAAGTTACAAAGCATGCACTGAATTCTATTTAGGCTAATAAGATTTGATATCCATTTGTGACTGAAATCTGAAACAATTTGATTGTGGTTATTGCACTGAAATTTTACAGATATTGTTTGCATTTAAAAATTGTTGACATAAGTGACCACAAGCTATAAGTTTCGGTGGGATCATAATAAAAACCTGAAACAATTTGATTCGATTTTCTTGCACCTAAACACATGCAACCCATCATTCCAAATTTAAGCACACAATGTTCAGAATTATATTTCTAATCAGCATGGCCAGTGGCGAATTCACCTCCCGTGCAGCTGCCCGGGCTTCACAGCGACGATCCTTCGCTAAAATAGATTAATTCCCGGGCAGTGTGTATGCTAGTTAGAGGTAATAACGGCAAGCATGTAGGCTGCAACCGACACTTGGGTTAGGCCTCGGCTGCCTATGGCATGCATGCCTCACAAGTACTAGCCTCAATGCGTCACACGGACATGTACAGAAGCATTGAACAACTTGCTAAGTTTTAATTCTAATACCAGTTCCTTGAATGAATAGACTAACTTATTGTTGCTAGAGTTTCAGGCATAATGTAATATTTAGATGATATATATGAGATAAGTCTTAAAATAACAGAGTTACATATAAGATAAGTCTTAAAATATCACAATGTTAATTTTTATGGCTTTATACAAAAAAAATGAACATATTTAAATATTGTAGCAGTTTATTTGTTAGCTAGCCTTGCCCAGGCAGTTTATTCAGTTGAACTGGTCCCCAACAAAATAAATTGGCTGTCTTTTTAATAAAAACCCAATAGATTAGTGGGCTTCTGCTATACCTTGTTTGCACCAATGTAGTATAGGCTCGTCTGTTAGCCCTTTGTACTGGATGAGTGCATGTTTATTTTAGTAGTGTATAGAACTCCATTTACAAACTGAATGGCCATTTTCTTGTTAAAATATTATATTATTCGGACACAACTTGAACAAGATTTGCATGTTCATGTGTTCTATACGGGGGGTTGAATCTCGTCCGCCCGGCGGTTTCGTTAATTTTATCAATACCCCATCAAACCATGTCCATCATGTGGCCGAAGGGAGTCCATCACAGCCCATCAATGTTGTGAATGGACATGTCGCTAGGACTGATAAGCGCTTGTCATGGATGAAGGATGAAGACTTGAGATTGGTAAGTGGCTTATGTCAGCTATTTATTTGTTAATGGCATGCATGTCACTTGCATTACTGGCAATAATAAATTTCTTTTTCCTGAAATTGTAGATCAGTGCTTGGCTGAACAACTCAAATGATCCTATAGAATCGAATTTCAAGAAGAATGATAAATATTGGGGCGATGTAGCTGCAGCTTACAACAGCACTACACCAAAAAACCGAGCTAGACTAGTTAAGCAAGTTAAGGATCGTTTTGGTAAAATTAGGAAGAAGGTCGGGAATTTTTGTTGCTCTTGGAAGGAGGTTAATTCATTATATGCTAGTGGGGAGTCTAATGAAGATCTGATGAACAAGGCACAGAAAATATATGAGAATGACTTCAAGGATGGTCCATTCTTGTTTATGCACTGTTGGAATGAACTAAAAAAACAACCAAAGTGGCATGCATATTTGGAGCAGCTTGACAAGTCAAACAAAAGGAAGGCAGATTACAATGATGTTATCCCCCTTGATGATGAAGAAGATATACCACGACCAATAGGAGCCAAGGCATCTAAGGCGCAACGTAGTTGCAAAGAAAAGAGCAAGGTCCAAGTTTGTACAACTGAGCTTGAGGATGACATCCGTAAGTTTATGGATGCGCATGCAGCAACCAAGGAAGGGCAAAATGAAGTGTTAGAGACCCAAATACGGGTTTCTATTGACAACCATGCAGCCAAAAAGCTTAGTCGCCAGACAGCTATGATTGAAACCTATCGAGACTTAATGAACAAAGACACAAGGAAGATGCCTGACGATATGAGATCTGAGCTTGTTCACATGCTGAAATGCATGAGAGAAGAGATATTCAACAAAAATCAGTGAGGTATGAATCTCTGTTCTAAAATGTAGTTAGATGAAATTAATTTGAAGCCTTCAAAAAAAAACATGTAATCAGCCCAAAAATCAATGCAAGTTAGTACAAACACACATGCAGGTAGTTCCCTCTTTCATGCTTATTAATTGCAGTTTGTCCAAAAAAAAAGAACTTTCTCCAAGTTCCCATACTGATTGCTTATTCATTGCAGCTAGTCAAAAAGTTATGTAGTCAGTCCAAAATTTTGCACTTGGTCCAAATTATGATGCAGTCAACTCAAATATTCATTGCTAGTAGTCTCTTATGGTGAAATTAGCATGCAAAAGTTGTTTGCATTTAAAGTGGACCTTTGTCCAAATTCCCATGTTGACTACTTATTAATTGCAGCTACTCAAAAAATCATGTAATCAGTCCAAAATTTTGCACTTGGTCCAAATTATAATGCAGTCAACTCAAATATTCATTGCTAGCATTCTCTTATGCTGAAATTAGCATGCAAACTACTACAACCTGTCAATCTCTATCTATATATTGACTCTCCCATTCTGGAATTCCCAAACCATTCCATCCTTTTCTAGAACCACCATGTCAGATTCATCCTCAAACTCAAACTCATCCTCCTACTCAAATGACCTAGACCCATCCAAATTTCTTGACAAGTACATTTCTGATCAAAATGTCCTAGACTCCTTTGCTACTCGCATCGTAGAGAAGATCAAGACCAAGTTTGCAGCTGGGCTACTCAAGCGCTAAAGTGGAACTAGGAAGACCATTGCAAGGGATCATGAAGAAGGTCACCGACGTCTAGTGGCTGATTACTTTGCAAATCAGCCACTCTACCCTGAGAGAATGTTTCGCACAAGATTTCGTATGCGAAAGCATCTCTTTTTACGTATCGTGCAAGCCTTAGGTCAATGGTCTCCATACTTTACTCAAAGAGAAGATTGTTCTGGTCGCACTGGCCTTTCTCCACTTCAGAAGTGCACAGCAGCGATCCGTATGTTAGCATATGGCACTCCTGCTGATGCTTTAGATGAATACTTGCTAATTGGCAAAAGCACTTCCTTAGAGTGCTTGGACACTTTTGCACGAGGGGTAGTTGAGGTCTTTGGTGGGCAATACTTGCGACGGCCCACAAGTGAGGATATAGATCATATACTACAAGTTAATGAATCTCGTGGCTTTCCGGGTATGTTAGGAAGTATTGATTGCATGCACTGGAGGTGGGAGAGTTGTCCGAGAGCTTGGAGGGGACAATTCACCCGTGGTGACTATAAAGTCCTAACAATTATCCTTGAAGCGGTTGCGTCATATGACCTTTGGATTTGGCATGCTTTCTTTGGTGTCGCTGGTTCTAACAACGATATAAATGTGCTGAATCAGTCCCCTTTATTCCTTGAACAAGTGAGAGGGGAGGCTCCTCGGGTTCATTTTTCTGTAAATGGGAATGAGTACAACAATGGGTACTACCTTGCTGATGGTATATACCCAGAATGGGCCAGCTTCATGAAGACGATATCACTTCCACAAATAGAGAAGCATAAATTGTTTGCTGAACGTCAAGAAGGTGCAAGGAAAGATGTGGAGCAGGCTTTTGGGGTATTGCAAGCCCGTTTCAACATTGTACGCCGTCCAGCAAAGAAGTGGAAGCGAAAGAGTGTTGGGAAAATCATGCTAGCTTGTGTGATTCTCCATAATATGATTGTTGAAGACGAGAGAGAGGATGCAATATGTGACATTGACCTCAATAGAATTCCTAGGACATCAATAGTTCTGCCTCCTGAAGTAACTTGTGATGATAACCCATGTTTTTCTGATGTGCTACGTAGGAGATCTGCTATTCGTGCTCGTTCAGTCCATACCCAGCTGAAAAATGATTTAATTGAGCATATTTGGAATCGGTTTGGAAATAGGCAGTCAACATAAACATGGTAGGGTAATAAGCATGTGGTTTTTGCCTTCTTTTTTTGTCATATATAGATCATCAATTAATCCTTGTGTAATATATTTCAGGAAGATGTTCTCTTGTCCAATTCATGGTGCTGAACTTCTTACAGGTAACTTGTATGAACTAAATTTACTCCTAGGCCAGACTACTTACAACCATAGTTTAGTGATTCTCTCTTCTTATTTGGGATGCAGTAGCATGGCATTCTCTTAATGCTCTTACATGTTGAACTCATACTGAATTAACTTGTTTATGCATTTGGATATACTGGATCTCTCACTCAATTAATTATCTCAGCAACTATTTCTTTGAAAGAACTCACACTGAATTAACTTGTTTAGATTTATATCTCCTTCATCACATTTTTCGTATCCTGTACTAAGGAAAAAGCATGCAGTAGTTACTCCTTTTAGTGAGGTTTCATTGAAAAGATGATTCACTGTGCAATTTTTAGTTTCTCATTTATTCATCACACGATGTACATGTCATATGATACATCTGTCTTTTTTTTTTCAGCAAATGATGGTAGTTCAGGCAATGGTCATATGATGCAATGGTTCAATGAAGAGTCTCTCTTTGATTAGATGAAGAAATCGTTATCTATCTGTTAGATAACATATTTATGTATTTTGCTTAATGTCACATTGTTTGTGACTTTTGGATTTGTAAACCATTAAGTATGTTTTGTTTTATCCTCTATTACCTTGTCGGTTATTTAGACATGCACTACCCTATCCTTTTGTTTAGACCTGGGATGATCCATTAATCTACTTGCTATGGTATTTTATTTATCTGTTGTTGGTGCCTTGTATTTTTTTATACTACGGAGACTCTTCATCTTATAACACAAATTTGGTTGATGTGC
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| CDS seq | ATGTTCATGTGTTCTATACGGGGGGTTGAATCTCGTCCGCCCGGCGGTTTCGTTAATTTTATCAATACCCCATCAAACCATGTCCATCATGTGGCCGAAGGGAGTCCATCACAGCCCATCAATGTTGTGAATGGACATGTCGCTAGGACTGATAAGCGCTTGTCATGGATGAAGGATGAAGACTTGAGATTGATCAGTGCTTGGCTGAACAACTCAAATGATCCTATAGAATCGAATTTCAAGAAGAATGATAAATATTGGGGCGATGTAGCTGCAGCTTACAACAGCACTACACCAAAAAACCGAGCTAGACTAGTTAAGCAAGTTAAGGATCGTTTTGGTAAAATTAGGAAGAAGGTCGGGAATTTTTGTTGCTCTTGGAAGGAGGTTAATTCATTATATGCTAGTGGGGAGTCTAATGAAGATCTGATGAACAAGGCACAGAAAATATATGAGAATGACTTCAAGGATGGTCCATTCTTGTTTATGCACTGTTGGAATGAACTAAAAAAACAACCAAAGTGGCATGCATATTTGGAGCAGCTTGACAAGTCAAACAAAAGGAAGGCAGATTACAATGATGTTATCCCCCTTGATGATGAAGAAGATATACCACGACCAATAGGAGCCAAGGCATCTAAGGCGCAACGTAGTTGCAAAGAAAAGAGCAAGGTCCAAGTTTGTACAACTGAGCTTGAGGATGACATCCGTAAGTTTATGGATGCGCATGCAGCAACCAAGGAAGGGCAAAATGAAGTGTTAGAGACCCAAATACGGGTTTCTATTGACAACCATGCAGCCAAAAAGCTTAGTCGCCAGACAGCTATGATTGAAACCTATCGAGACTTAATGAACAAAGACACAAGGAAGATGCCTGACGATATGAGATCTGAGCTTGTTCACATGCTGAAATGCATGAGAGAAGAGATATTCAACAAAAATCAGTGA
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| Protein seq | MFMCSIRGVESRPPGGFVNFINTPSNHVHHVAEGSPSQPINVVNGHVARTDKRLSWMKDEDLRLISAWLNNSNDPIESNFKKNDKYWGDVAAAYNSTTPKNRARLVKQVKDRFGKIRKKVGNFCCSWKEVNSLYASGESNEDLMNKAQKIYENDFKDGPFLFMHCWNELKKQPKWHAYLEQLDKSNKRKADYNDVIPLDDEEDIPRPIGAKASKAQRSCKEKSKVQVCTTELEDDIRKFMDAHAATKEGQNEVLETQIRVSIDNHAAKKLSRQTAMIETYRDLMNKDTRKMPDDMRSELVHMLKCMREEIFNKNQ |
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| Function | Glutathione S-transferase T3 [UniProtKB/Swiss-Prot:Q9FHE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0241700 | OsNip_09t0241700-01 | Chr09 | 3141918 | 3147413 | + | RAP2018-11-26 | ||
| CDS seq | ATGTTCATGTGTTCTATACGGGGGGTTGAATCTCGTCCGCCCGGCGGTTTCGTTAATTTTATCAATACCCCATCAAACCATGTCCATCATGTGGCCGAAGGGAGTCCATCACAGCCCATCAATGTTGTGAATGGACATGTCGCTAGGACTGATAAGCGCTTGTCATGGATGAAGGATGAAGACTTGAGATTGATCAGTGCTTGGCTGAACAACTCAAATGATCCTATAGAATCGAATTTCAAGAAGAATGATAAATATTGGGGCGATGTAGCTGCAGCTTACAACAGCACTACACCAAAAAACCGAGCTAGACTAGTTAAGCAAGTTAAGGATCGTTTTGGTAAAATTAGGAAGAAGGTCGGGAATTTTTGTTGCTCTTGGAAGGAGGTTAATTCATTATATGCTAGTGGGGAGTCTAATGAAGATCTGATGAACAAGGCACAGAAAATATATGAGAATGACTTCAAGGATGGTCCATTCTTGTTTATGCACTGTTGGAATGAACTAAAAAAACAACCAAAGTGGCATGCATATTTGGAGCAGCTTGACAAGTCAAACAAAAGGAAGGCAGATTACAATGATGTTATCCCCCTTGATGATGAAGAAGATATACCACGACCAATAGGAGCCAAGGCATCTAAGGCGCAACGTAGTTGCAAAGAAAAGAGCAAGGTCCAAGTTTGTACAACTGAGCTTGAGGATGACATCCGTAAGTTTATGGATGCGCATGCAGCAACCAAGGAAGGGCAAAATGAAGTGTTAGAGACCCAAATACGGGTTTCTATTGACAACCATGCAGCCAAAAAGCTTAGTCGCCAGACAGCTATGATTGAAACCTATCGAGACTTAATGAACAAAGACACAAGGAAGATGCCTGACGATATGAGATCTGAGCTTGTTCACATGCTGAAATGCATGAGAGAAGAGATATTCAACAAAAATCAGTGA
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| Protein seq | MFMCSIRGVESRPPGGFVNFINTPSNHVHHVAEGSPSQPINVVNGHVARTDKRLSWMKDEDLRLISAWLNNSNDPIESNFKKNDKYWGDVAAAYNSTTPKNRARLVKQVKDRFGKIRKKVGNFCCSWKEVNSLYASGESNEDLMNKAQKIYENDFKDGPFLFMHCWNELKKQPKWHAYLEQLDKSNKRKADYNDVIPLDDEEDIPRPIGAKASKAQRSCKEKSKVQVCTTELEDDIRKFMDAHAATKEGQNEVLETQIRVSIDNHAAKKLSRQTAMIETYRDLMNKDTRKMPDDMRSELVHMLKCMREEIFNKNQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0241700 | OsNip_09t0241700-02 | Chr09 | 3141875 | 3147468 | + | IsoSeq | ||
| CDS seq | GGATCACGCTTTCCATCCGTATCGCCCTCCCCGTCCGCATCGCCCTCCTCTCCAGATCCCCTTCCTCTCTCTCGATCGCCGCCGCCTCCTCGATTCTCAGCGCGCGACGCAATCTATCCCCCCGGCTCCCGCGCTTCTCCCCTCCCTCCCGCGCGGTTCCCGCGCTTCTCCTCTCCCTCTCCCGCTCGCGAAATTGCCTACCTATATGACAGAGAAATCCAGTTGCTCCAAAATTCCCCATCGCCATATTCCGCCGCTTCCGATCTCCCTCTTCCGCCGGCCACCGAATCGACAGCCACCTCGACCACAGACCCGCTCCTCTTCCACCTT
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| Protein seq | GSRFPSVSPSPSASPSSPDPLPLSRSPPPPRFSARDAIYPPGSRASPLPPARFPRFSSPSPAREIAYLYDREIQLLQNSPSPYSAASDLPLPPATESTATSTTDPLLFHL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr09 | 3144664 | 3146669 | + | OsNip_09t0241700-01 | OsNip_09t0241700-02,OsNip_09t0241700-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.974602 | 1.154738 | 5.685786 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0241700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001810 | RBH | 1.275075 | 14.466633 | 14.674710 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0001760 | RBH | 0.637465 | 4.581700 | 8.206573 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005540 | SBH | 0.290271 | 0.000000 | 2.612158 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0001750 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0001910 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0001890 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0078700 | RBH | 0 | 0.0151345 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0001850 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0001870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0001970 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0001840 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0001890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G001920 | RBH | 1.223968 | 5.806066 | 7.191626 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0001910 | RBH | 10.244135 | 48.196239 | 18.445770 |
