Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_09g0005540 | OGI:09027050 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr09:9062335-9066917 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgcaacataattagttttctcttgtccgaataggaacattttgtttttggcatgggatgcaatgtgagatcacagctgacaccccagaatgttctcacgacaaccaacaaagaggttgccttatctacactatagctgttcaagcattcttgccgtcgatgttgcatagacatcactgttcaagcattgttgctagtgtagatcaggttagcaaaatggacatttctgccagctgaatgaacattcctaagaacttagacgagccaactaaagctgactacatattgatccatcacttacaggattcaattagtcaagttccacaaactggatgtcagtaagtctaggctaaacttgcaagtgatctatgactagtcccttcattcaacaggtagaatagaaggatctatgactagctagtgcttgagatgacatttgcacagtaacgctttaagacaaattgaagcaagggcactaattgccatccttgctgaatagcattcctcctatatgcctcagtgctttctcatactctgccttctgaaactcatcgaaccttgaagtgtctgccagcaacagctccgtgtacttcttgtaaagtgtagttttcttcttctcccttgcttcttcctgctttattctggccaattcaagctgctctttcgagaggcggagctgtacctctgacatcttcacacgatcattgttaagcatggtctgaagatgcatcgcatgtttgatgtcttcttgcacctcgcatgaggaagacgatgccttgcctttacgtttccgactgaactttggtgccttgcaaattcgtggctgtgtttcttttctaggaatgttttcccttgtcgccctctcgttgtcttgtgcatcgaaaccttgtggacgtgattctttttcaagcatatcatcccttactgccaacccctgttgatgttcattcaattctgaagtgtcaacaagacgaaatccagtgggccaggaagtatcagctgtcaataattctgattgcttcttggaaattcctgtgtccttggtgcaagcatcttgttgtttcaaactggccaacagaagcttttcattggagatagaaggctctacttctgtcagctcctcagggttcttgataagcatgtcttcttgcatctctgaagacgaagttgacctcttaactttagcttctttagatgtcatgcaaacttcttcacctatttcttttccaggcatttcttcagagtcttcagaagatgacatgtactcccaagaatcagactgcattgttcttttcgtaaataaacaagacatgtatgctttccacttgggttggttccaaactgctttccagcaatggtcgaaggcgaaattatgctctgcttcttcgagatacatcacacgtgcttcctcattatacatcagccaagttttgtccatcagttgcatgccctcagagtggccactaggatattttgccttaacccggcaccaacaatcatggaagtgtgccacttttctgaatatcttgtgccagtggcccttcacatgttgaagttcccttcttcgagttgcagggattgtactgttgtattctgctacaaccttttcccagtacctgtcagtcttgtaataaatcaaccaggcgcttatctgttgttccagcagaaagatgttagtgcgccatttgcaaggtccaaaaattacaaatagaaaaaaggccaaggcatgcttaccaatcttatgtcctccttttctgtccaatatagtcgcttagtagccttctcaggttcagcaatgtcagtgccttgttctcctggaccagttattgaacgcggggtgccttggtcagacagtgccttggatggaataactggagcaggtaaaaatggtgatggcatagctccagcaggaggtggtaatgtgtatggagcatattgtggtggaacagcatattgcaaattttgcgtgtatggagggtagtgaggaaatggtgggaatgggaaattcattgcatatggtggttgtgaaaataggtgctgcggatattgttggtggcagaaattcatggagctgtctttatctggtgtgacgttgtgacaactttttttatctgaagaaccaccaggtgggcgaggacccattgcaaatgagagaagattgtacggaatgtgtatattgggtgtgatcagatgtgtgtgaaacacatgggtttggaggcaattctgaaccacctatttggcaaatgttcccaacaaactgttaagggaaatatacccaatagctcttttgttcagctctttgtgtactttcagtcactgtcctggagataccacaaatcggaaacattaacacttgatctcccactagaccaaagcaggtcagcagaaacagtagtattgcaattaattgtgtcaaggccggtgtaacactcctgcaaaaaagcataatagaataaaagatttgaaattatgtacttaatctgatttattacaaacaataagaattttttatcacctaatgaaataactctattaaattcatcacactacaaaacaaattatgaactcaaatttttaattcttttgctctgaagtatattgagttagggcccttttagtagagcccaaaggccagattctctaatgaatcaatacccatttccacatggaacacagagtaaccaaagtactgctcacaacaagaattaagtgaaacaagcaacaaagtgccgaccaaataggcaagaaattaccaacccacaatcaaaacctttgatgtgccccctaccgtctgccaagtgcgaactcctatcaacttcagcatatttttttggaacattaccaagctcaagttgtctagtaaaacacgcaaccttgaacaatcaaagtgcaaaaggatttactctaattccagtggtgagaaatgaacatgatacagttcgaccaaatgtgtgtgtcttaagtcactccggataagacatctagagaaagatcaacaagacctttaagtagaccaagatgcacaatatgtgaaacagaatatgctgtttctatgtttgagaagccaactgttacagtgtcctaaaaggaatcagaggccaatagaaatacagagcttaatgcaagacctattggagtcttgcaccggactggaaatgccattctcaaacaatgtagacctatcggagtcttgatagtggtattcaactgttttttacataataaaggttctgaagaaaaagggtacatcatttgcaacaagtctttgcataaattccacaagtaaagctagtgtttactatgacagatctaattcacctgtgcaaattgaatgtcaaaatcattaatggaaactaaatgttccaagtttcacaaaggacatgttatctcctaaatcattttgatattatgtcggtataagggtaagaaactgaatggaagcatcagttctaccaacatggcagagcatgggataagagaaaacacaagctatctttgaaaggagcagtccatctccacaaactaaacaaataagatgtgatatgaaaagaaagtgcctgttcaataaggaaggaggtgcataatgccatcactaaactgaatgtggtctatttaatagtttacgtccaaaaataacaagcagccaacatccaaactttcatagaacctaattgtaagagttccctaatagtctgtcctacaggccgcagtgtcatctaaaagaaaaataattgccataaaactgtaacatccattgtccagtccaaaaaagcgagaaaataaaagctgcattagccactctatgacaggcagataaactaatctttttcacaaacagaaatgccatttacatcgacaaaaatgagaagaagctcaagattaggaaagacaaatacggtacatggatgtcatctgccaagttgggaagataactggcatatagagtggttaattgcacaatgcaacccattattttgactactgggacaaatttctataaaatggcagcaataagcacaaccacattactgcattatcataagaagaaatcaataatgcatagtctgcaagcatacactcagattgatgaaaatggtaacctaatccagctggattcttgggctcaggcctcctgcttcgatccctcctcctaaagagagaaaggaaaggaaaaaaaaaaaagctagatcttcaataacactgcaacacgaagaaaagaaactatttctactcgccccagctcccaaccttgggtggaaatcagagattgacggcgagggcaacagccggctcctccccgatgcctttctcggagcacatcaggaggtcggaattgcggcagcgggaggaggaggaggaggcgtacgcgaagcagcgccgcggagacgggaagctcccccggcgcagcgcgttagggtcgcggtggttgggagcgcgggcgggcggcggcgctgcgttggaggatggagatcacgcgggggctcgccggcggcgagaggtcggagcgcggcgttgggggaaggaggcgagggttttggcggccggattttggtggcggaatgtgaaggctagtcttggactcgc
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| CDS seq | atgggtcctcgcccacctggtggttcttcagataaaaaaagttgtcacaacgtcacaccagataaagacagctccatgaatttctgccaccaacaatatccgcagcacctattttcacaaccaccatatgcaatgaatttcccattcccaccatttcctcactaccctccatacacgcaaaatttgcaatatgctgttccaccacaatatgctccatacacattaccacctcctgctggagctatgccatcaccatttttacctgctccagttattccatccaaggcactgtctgaccaaggcaccccgcgttcaataactggtccaggagaacaaggcactgacattgctgaacctgagaaggctactaagcgactatattggacagaaaaggaggacataagattgataagcgcctggttgatttattacaagactgacaggtactgggaaaaggttgtagcagaatacaacagtacaatccctgcaactcgaagaagggaacttcaacatgtgaagggccactggcacaagatattcagaaaagtggcacacttccatgattgttggtgccgggttaaggcaaaatatcctagtggccactctgagggcatgcaactgatggacaaaacttggctgatgtataatgaggaagcacgtgtgatgtatctcgaagaagcagagcataatttcgccttcgaccattgctggaaagcagtttggaaccaacccaagtggaaagcatacatgtcttgtttatttacgaaaagaacaatgcagtctgattcttgggagtacatgtcatcttctgaagactctgaagaaatgcctggaaaagaaataggtgaagaagtttgcatgacatctaaagaagctaaagttaagaggtcaacttcgtcttcagagatgcaagaagacatgcttatcaagaaccctgaggagctgacagaagtagagccttctatctccaatgaaaagcttctgttggccagtttgaaacaacaagatgcttgcaccaaggacacaggaatttccaagaagcaatcagaattattgacagctgatacttcctggcccactggatttcgtcttgttgacacttcagaattgaatgaacatcaacaggggttggcagtaagggatgatatgcttgaaaaagaatcacgtccacaaggtttcgatgcacaagacaacgagagggcgacaagggaaaacattcctagaaaagaaacacagccacgaatttgcaaggcaccaaagttcagtcggaaacgtaaaggcaaggcatcgtcttcctcatgcgaggtgcaagaagacatcaaacatgcgatgcatcttcagaccatgcttaacaatgatcgtgtgaagatgtcagaggtacagctccgcctctcgaaagagcagcttgaattggccagaataaagcaggaagaagcaagggagaagaagaaaactacactttacaagaagtacacggagctgttgctggcagacacttcaaggttcgatgagtttcagaaggcagagtatgagaaagcactgaggcatataggaggaatgctattcagcaaggatggcaat
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| Protein seq | MGPRPPGGSSDKKSCHNVTPDKDSSMNFCHQQYPQHLFSQPPYAMNFPFPPFPHYPPYTQNLQYAVPPQYAPYTLPPPAGAMPSPFLPAPVIPSKALSDQGTPRSITGPGEQGTDIAEPEKATKRLYWTEKEDIRLISAWLIYYKTDRYWEKVVAEYNSTIPATRRRELQHVKGHWHKIFRKVAHFHDCWCRVKAKYPSGHSEGMQLMDKTWLMYNEEARVMYLEEAEHNFAFDHCWKAVWNQPKWKAYMSCLFTKRTMQSDSWEYMSSSEDSEEMPGKEIGEEVCMTSKEAKVKRSTSSSEMQEDMLIKNPEELTEVEPSISNEKLLLASLKQQDACTKDTGISKKQSELLTADTSWPTGFRLVDTSELNEHQQGLAVRDDMLEKESRPQGFDAQDNERATRENIPRKETQPRICKAPKFSRKRKGKASSSSCEVQEDIKHAMHLQTMLNNDRVKMSEVQLRLSKEQLELARIKQEEAREKKKTTLYKKYTELLLADTSRFDEFQKAEYEKALRHIGGMLFSKDGN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0005540 | OsCMeo_09g0005540.01 | Chr09 | 9062335 | 9066917 | - | NAM | ||
| CDS seq | atgggtcctcgcccacctggtggttcttcagataaaaaaagttgtcacaacgtcacaccagataaagacagctccatgaatttctgccaccaacaatatccgcagcacctattttcacaaccaccatatgcaatgaatttcccattcccaccatttcctcactaccctccatacacgcaaaatttgcaatatgctgttccaccacaatatgctccatacacattaccacctcctgctggagctatgccatcaccatttttacctgctccagttattccatccaaggcactgtctgaccaaggcaccccgcgttcaataactggtccaggagaacaaggcactgacattgctgaacctgagaaggctactaagcgactatattggacagaaaaggaggacataagattgataagcgcctggttgatttattacaagactgacaggtactgggaaaaggttgtagcagaatacaacagtacaatccctgcaactcgaagaagggaacttcaacatgtgaagggccactggcacaagatattcagaaaagtggcacacttccatgattgttggtgccgggttaaggcaaaatatcctagtggccactctgagggcatgcaactgatggacaaaacttggctgatgtataatgaggaagcacgtgtgatgtatctcgaagaagcagagcataatttcgccttcgaccattgctggaaagcagtttggaaccaacccaagtggaaagcatacatgtcttgtttatttacgaaaagaacaatgcagtctgattcttgggagtacatgtcatcttctgaagactctgaagaaatgcctggaaaagaaataggtgaagaagtttgcatgacatctaaagaagctaaagttaagaggtcaacttcgtcttcagagatgcaagaagacatgcttatcaagaaccctgaggagctgacagaagtagagccttctatctccaatgaaaagcttctgttggccagtttgaaacaacaagatgcttgcaccaaggacacaggaatttccaagaagcaatcagaattattgacagctgatacttcctggcccactggatttcgtcttgttgacacttcagaattgaatgaacatcaacaggggttggcagtaagggatgatatgcttgaaaaagaatcacgtccacaaggtttcgatgcacaagacaacgagagggcgacaagggaaaacattcctagaaaagaaacacagccacgaatttgcaaggcaccaaagttcagtcggaaacgtaaaggcaaggcatcgtcttcctcatgcgaggtgcaagaagacatcaaacatgcgatgcatcttcagaccatgcttaacaatgatcgtgtgaagatgtcagaggtacagctccgcctctcgaaagagcagcttgaattggccagaataaagcaggaagaagcaagggagaagaagaaaactacactttacaagaagtacacggagctgttgctggcagacacttcaaggttcgatgagtttcagaaggcagagtatgagaaagcactgaggcatataggaggaatgctattcagcaaggatggcaat
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| Protein seq | MGPRPPGGSSDKKSCHNVTPDKDSSMNFCHQQYPQHLFSQPPYAMNFPFPPFPHYPPYTQNLQYAVPPQYAPYTLPPPAGAMPSPFLPAPVIPSKALSDQGTPRSITGPGEQGTDIAEPEKATKRLYWTEKEDIRLISAWLIYYKTDRYWEKVVAEYNSTIPATRRRELQHVKGHWHKIFRKVAHFHDCWCRVKAKYPSGHSEGMQLMDKTWLMYNEEARVMYLEEAEHNFAFDHCWKAVWNQPKWKAYMSCLFTKRTMQSDSWEYMSSSEDSEEMPGKEIGEEVCMTSKEAKVKRSTSSSEMQEDMLIKNPEELTEVEPSISNEKLLLASLKQQDACTKDTGISKKQSELLTADTSWPTGFRLVDTSELNEHQQGLAVRDDMLEKESRPQGFDAQDNERATRENIPRKETQPRICKAPKFSRKRKGKASSSSCEVQEDIKHAMHLQTMLNNDRVKMSEVQLRLSKEQLELARIKQEEAREKKKTTLYKKYTELLLADTSRFDEFQKAEYEKALRHIGGMLFSKDGN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_09g0005540 | OsCMeo_09g0005540.02 | Chr09 | 9062335 | 9066629 | - | NAM | ||
| CDS seq | atgggtcctcgcccacctggtggttcttcagataaaaaaagttgtcacaacgtcacaccagataaagacagctccatgaatttctgccaccaacaatatccgcagcacctattttcacaaccaccatatgcaatgaatttcccattcccaccatttcctcactaccctccatacacgcaaaatttgcaatatgctgttccaccacaatatgctccatacacattaccacctcctgctggagctatgccatcaccatttttacctgctccagttattccatccaaggcactgtctgaccaaggcaccccgcgttcaataactggtccaggagaacaaggcactgacattgctgaacctgagaaggctactaagcgactatattggacagaaaaggaggacataagattgataagcgcctggttgatttattacaagactgacaggtactgggaaaaggttgtagcagaatacaacagtacaatccctgcaactcgaagaagggaacttcaacatgtgaagggccactggcacaagatattcagaaaagtggcacacttccatgattgttggtgccgggttaaggcaaaatatcctagtggccactctgagggcatgcaactgatggacaaaacttggctgatgtataatgaggaagcacgtgtgatgtatctcgaagaagcagagcataatttcgccttcgaccattgctggaaagcagtttggaaccaacccaagtggaaagcatacatgtcttgtttatttacgaaaagaacaatgcagtctgattcttgggagtacatgtcatcttctgaagactctgaagaaatgcctggaaaagaaataggtgaagaagtttgcatgacatctaaagaagctaaagttaagaggtcaacttcgtcttcagagatgcaagaagacatgcttatcaagaaccctgaggagctgacagaagtagagccttctatctccaatgaaaagcttctgttggccagtttgaaacaacaagatgcttgcaccaaggacacaggaatttccaagaagcaatcagaattattgacagctgatacttcctggcccactggatttcgtcttgttgacacttcagaattgaatgaacatcaacaggggttggcagtaagggatgatatgcttgaaaaagaatcacgtccacaaggtttcgatgcacaagacaacgagagggcgacaagggaaaacattcctagaaaagaaacacagccacgaatttgcaaggcaccaaagttcagtcggaaacgtaaaggcaaggcatcgtcttcctcatgcgaggtgcaagaagacatcaaacatgcgatgcatcttcagaccatgcttaacaatgatcgtgtgaagatgtcagaggtacagctccgcctctcgaaagagcagcttgaattggccagaataaagcaggaagaagcaagggagaagaagaaaactacactttacaagaagtacacggagctgttgctggcagacacttcaaggttcgatgagtttcagaaggcagagtatgagaaagcactgaggcatataggaggaatgctattcagcaaggatggcaat
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| Protein seq | MGPRPPGGSSDKKSCHNVTPDKDSSMNFCHQQYPQHLFSQPPYAMNFPFPPFPHYPPYTQNLQYAVPPQYAPYTLPPPAGAMPSPFLPAPVIPSKALSDQGTPRSITGPGEQGTDIAEPEKATKRLYWTEKEDIRLISAWLIYYKTDRYWEKVVAEYNSTIPATRRRELQHVKGHWHKIFRKVAHFHDCWCRVKAKYPSGHSEGMQLMDKTWLMYNEEARVMYLEEAEHNFAFDHCWKAVWNQPKWKAYMSCLFTKRTMQSDSWEYMSSSEDSEEMPGKEIGEEVCMTSKEAKVKRSTSSSEMQEDMLIKNPEELTEVEPSISNEKLLLASLKQQDACTKDTGISKKQSELLTADTSWPTGFRLVDTSELNEHQQGLAVRDDMLEKESRPQGFDAQDNERATRENIPRKETQPRICKAPKFSRKRKGKASSSSCEVQEDIKHAMHLQTMLNNDRVKMSEVQLRLSKEQLELARIKQEEAREKKKTTLYKKYTELLLADTSRFDEFQKAEYEKALRHIGGMLFSKDGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr09 | 9064765 | 9066582 | - | OsCMeo_09g0005540.01 | OsCMeo_09g0005540.01,OsCMeo_09g0005540.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.290271 | 0.000000 | 2.612158 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0318600 | RBH | 0.529831 | 0.460418 | 1.096582 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g14960 | RBH | 0.352849 | 0.304959 | 0.277988 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0318600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005320 | RBH | 0.102982 | 0.950432 | 1.562481 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005360 | RBH | 0.000000 | 0.317273 | 0.576999 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005530 | RBH | 0.0 | 0.0 | 3.635149 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005390 | RBH | 0.0 | 0.042704 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005610 | RBH | 0.000000 | 3.752006 | 4.769452 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0159400 | RBH | 1.4022575 | 2.4586185 | 5.097317 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005770 | RBH | 0.0 | 0.232183 | 0.334636 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0137700 | RBH | 1.09664 | 2.2545425 | 11.420856 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0005520 | RBH | 0.075095 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005420 | RBH | 0.132270 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005380 | RBH | 0.851316 | 4.578854 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005270 | RBH | 0.060929 | 0.0 | 0.333879 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005380 | RBH | 0.084675 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005600 | RBH | 0.000000 | 0.000000 | 0.759942 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005500 | RBH | 0.0 | 0.0 | 1.977767 |
