Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0024480 | OGI:08007510 | 12/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:29175185-29176539 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTCGAGATGGAGGCCATCTTCGAGCAGAAAGCTCTACTGGCCACGGTGCTTGGGCGGCAGCCGGCGGTGTCGCCAAGGGAGATGGCTACGATGCTCGTCGACTGTGGCATCCTTCCTTCGAACTTCCGGGTGGAGGTAACGACCCCTGAGGACTACCTCATTGTGTTCCGTCATGCCAGGGATAGGGAGTGGGTGCTAGAAAAATCCAAGCAAGTTCTCTTCCAAGAGGCACCGATCTCCTTCCGGCGCTGGGACAGGCGCCTTCAGGCCAGGAGCTCACGCATGCAGTTTTTCACAAAGATGTCCTTCGAGGGGCTATCTCAGCATGCTTGGGACGATTCTGCACTAGCCCAGGTGATTCGGGAGCTTGGAGGCGAGCTCGTGGAGATGGTGTCGCCGGCGGATGCCAGGGTGCTCACAGTATTCGCCTGGCTGAAGAATCCAAGCAGGGTGCCCAAGATCCTTGAGGTGGAGATCCCAGAGCGGGCGGGAGGCGGCCCGTCTCGCTGGGACAGGCATCTAGGGGCAACCCTCGTCCCAAGGGCGCCCCTGCGTAAGCGATGCCTAACCTACGACATCATCGTCCATATTGAGGAGGTCATCGACCCAACACaccgttgcactccaccgacggttctgacgatgatgacgacgacccgcggcgtatcacctattcctgctaggcaggcagggtggatggcaccgggccgtggagatcggagcaaggtggtggccggccgtttggaggggccaatggatcggcaggcggtctccctgggcgcttctggggagtttcgcacatggtgcagcgcgtggcgaatgaggcaggtgaggccagcacgttgcctcatcctgccgcggtggtggagaatgtcgcgcaggtgttggaggcggggacggagattgtggtggcggggCatgaggtgcaggacaggatggaagctgtgacagaggcgttggtgacggggatagatgctgcggtggcggggatagaggatgcgatggtggggacgcaggagtcggcagcgacgacagcaatcatagctgccccttccactgggatttggttctcgccgcaggcatggcaaccgccagcgccagaagaagaagagctgcatgtcactcagtcatatgccccgtccattgttggctgtcccctgccggcaaaggaagtgcaacgcagcccatcggcggttcaactgcgccgggatgaagaggagacgcagcatcatcccagtttgtcgctggaggaattagaggggggcggggtgatgagtatcaagacccaggtggagaagtcaccggcgcaaaacagatcggggcccgagtccggcgaggaCTctcTCCGCTAG
More
|
||||||||||
| CDS seq | ATGGTCGAGATGGAGGCCATCTTCGAGCAGAAAGCTCTACTGGCCACGGTGCTTGGGCGGCAGCCGGCGGTGTCGCCAAGGGAGATGGCTACGATGCTCGTCGACTGTGGCATCCTTCCTTCGAACTTCCGGGTGGAGGTAACGACCCCTGAGGACTACCTCATTGTGTTCCGTCATGCCAGGGATAGGGAGTGGGTGCTAGAAAAATCCAAGCAAGTTCTCTTCCAAGAGGCACCGATCTCCTTCCGGCGCTGGGACAGGCGCCTTCAGGCCAGGAGCTCACGCATGCAGTTTTTCACAAAGATGTCCTTCGAGGGGCTATCTCAGCATGCTTGGGACGATTCTGCACTAGCCCAGGTGATTCGGGAGCTTGGAGGCGAGCTCGTGGAGATGGTGTCGCCGGCGGATGCCAGGGTGCTCACAGTATTCGCCTGGCTGAAGAATCCAAGCAGGGTGCCCAAGATCCTTGAGGTGGAGATCCCAGAGCGGGCGGGAGGCGGCCCGTCTCGCTGGGACAGGCATCTAGGGGCAACCCTCGTCCCAAGGGCGCCCCTGCGTAAGCGATGCCTAACCTACGACATCATCGTCCATATTGAGGAGGTCATCGACCCAACACaccgttgcactccaccgacggttctgacgatgatgacgacgacccgcggcgtatcacctattcctgctaggcaggcagggtggatggcaccgggccgtggagatcggagcaagcgcgtggcgaatgaggcaggtgaggccagcacgttgcctcatcctgccgcggtggtggagaatgtcgcgcaggtgttggaggcggggacggagattgtggtggcggggCatgaggtgcaggacaggatggaagctgtgacagaggcgttggtgacggggatagatgctgcggtggcggggatagaggatgcgatggtggggacgcaggagtcggcagcgacgacagcaatcatagctgccccttccactgggatttggttctcgccgcaggcatggcaaccgccagcgccagaagaagaagagctgcatgtcactcagtcatatgccccgtccattgttggctgtcccctgccggcaaaggaagtgcaacgcagcccatcggcggttcaactgcgccgggatgaagaggagacgcagcatcatcccagtttgtcgctggaggaattagaggggggcggggtgatgagtatcaagacccaggtggagaagtcaccggcgcaaaacagatcggggcccgagtccggcgaggaCTctcTCCGCTAG
More
|
||||||||||
| Protein seq | MVEMEAIFEQKALLATVLGRQPAVSPREMATMLVDCGILPSNFRVEVTTPEDYLIVFRHARDREWVLEKSKQVLFQEAPISFRRWDRRLQARSSRMQFFTKMSFEGLSQHAWDDSALAQVIRELGGELVEMVSPADARVLTVFAWLKNPSRVPKILEVEIPERAGGGPSRWDRHLGATLVPRAPLRKRCLTYDIIVHIEEVIDPTHRCTPPTVLTMMTTTRGVSPIPARQAGWMAPGRGDRSKRVANEAGEASTLPHPAAVVENVAQVLEAGTEIVVAGHEVQDRMEAVTEALVTGIDAAVAGIEDAMVGTQESAATTAIIAAPSTGIWFSPQAWQPPAPEEEELHVTQSYAPSIVGCPLPAKEVQRSPSAVQLRRDEEETQHHPSLSLEELEGGGVMSIKTQVEKSPAQNRSGPESGEDSLR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0024480 | OsNaBo_08g0024480.01 | Chr08 | 29175185 | 29176539 | + | NAM | ||
| CDS seq | ATGGTCGAGATGGAGGCCATCTTCGAGCAGAAAGCTCTACTGGCCACGGTGCTTGGGCGGCAGCCGGCGGTGTCGCCAAGGGAGATGGCTACGATGCTCGTCGACTGTGGCATCCTTCCTTCGAACTTCCGGGTGGAGGTAACGACCCCTGAGGACTACCTCATTGTGTTCCGTCATGCCAGGGATAGGGAGTGGGTGCTAGAAAAATCCAAGCAAGTTCTCTTCCAAGAGGCACCGATCTCCTTCCGGCGCTGGGACAGGCGCCTTCAGGCCAGGAGCTCACGCATGCAGTTTTTCACAAAGATGTCCTTCGAGGGGCTATCTCAGCATGCTTGGGACGATTCTGCACTAGCCCAGGTGATTCGGGAGCTTGGAGGCGAGCTCGTGGAGATGGTGTCGCCGGCGGATGCCAGGGTGCTCACAGTATTCGCCTGGCTGAAGAATCCAAGCAGGGTGCCCAAGATCCTTGAGGTGGAGATCCCAGAGCGGGCGGGAGGCGGCCCGTCTCGCTGGGACAGGCATCTAGGGGCAACCCTCGTCCCAAGGGCGCCCCTGCGTAAGCGATGCCTAACCTACGACATCATCGTCCATATTGAGGAGGTCATCGACCCAACACaccgttgcactccaccgacggttctgacgatgatgacgacgacccgcggcgtatcacctattcctgctaggcaggcagggtggatggcaccgggccgtggagatcggagcaagcgcgtggcgaatgaggcaggtgaggccagcacgttgcctcatcctgccgcggtggtggagaatgtcgcgcaggtgttggaggcggggacggagattgtggtggcggggCatgaggtgcaggacaggatggaagctgtgacagaggcgttggtgacggggatagatgctgcggtggcggggatagaggatgcgatggtggggacgcaggagtcggcagcgacgacagcaatcatagctgccccttccactgggatttggttctcgccgcaggcatggcaaccgccagcgccagaagaagaagagctgcatgtcactcagtcatatgccccgtccattgttggctgtcccctgccggcaaaggaagtgcaacgcagcccatcggcggttcaactgcgccgggatgaagaggagacgcagcatcatcccagtttgtcgctggaggaattagaggggggcggggtgatgagtatcaagacccaggtggagaagtcaccggcgcaaaacagatcggggcccgagtccggcgaggaCTctcTCCGCTAG
More
|
|||||||
| Protein seq | MVEMEAIFEQKALLATVLGRQPAVSPREMATMLVDCGILPSNFRVEVTTPEDYLIVFRHARDREWVLEKSKQVLFQEAPISFRRWDRRLQARSSRMQFFTKMSFEGLSQHAWDDSALAQVIRELGGELVEMVSPADARVLTVFAWLKNPSRVPKILEVEIPERAGGGPSRWDRHLGATLVPRAPLRKRCLTYDIIVHIEEVIDPTHRCTPPTVLTMMTTTRGVSPIPARQAGWMAPGRGDRSKRVANEAGEASTLPHPAAVVENVAQVLEAGTEIVVAGHEVQDRMEAVTEALVTGIDAAVAGIEDAMVGTQESAATTAIIAAPSTGIWFSPQAWQPPAPEEEELHVTQSYAPSIVGCPLPAKEVQRSPSAVQLRRDEEETQHHPSLSLEELEGGGVMSIKTQVEKSPAQNRSGPESGEDSLR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0198800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g36660 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0198800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015820 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006370 | SBH | 0.0 | 0.466352 | 0.071566 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0024620 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0024450 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0613800 | SBH | 0.239216 | 0 | 1.297213 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023820 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0024180 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0024000 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024880 | SBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0007050 | SBH | 0.000000 | 2.020220 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023460 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023250 | RBH | 0.0 | 0.0 | 0.0 |
