Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0023250 | OGI:11080410 | 7/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:28968480-28970346 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtgtggcttccagatttgtGccgagcagccgccgcgctttctggaagaatggcggactggagaaccagaccttcggccggaaaggggaaactgcaccatttcctggactccgcacatggtcgagatggaggccatcttcgagcagaaagctctactggccacggtgcttgggcggcagccggcggtgtcgccaagggagatggctacgatgctcgtcgactgtggcatccttccttcgaacttccGggtggaggtaacgacccctgaggactacctcattgtattccgtcatgccagggatagggagtgggtgctagaaaaatccaagcaagttctcttccaagaggcaCcgatctccttccGgcgctgggacaggcgcctccaggccaggagctcacgcatgcagtttttcacaaagatgtccttcgaggggctacctcagcatgcttgggacgattctgcactagcccaggtgattcgggagcttggaggcgagctcgtggagatggtgtcgccggcggatgccagggtgctcacagtattcgcctggctgaagaatccaagtagggtgcccaagatccttgaggtggagatcccagagcgggcgggaggcggcccgtctcgctgggacaggcgtctaggggcaaccctcgtcccaagggcgcccctgcgtaagcgatgcctaacctacgacatcatcgtccatattgaggaggtcatcgacccaaCaccgttgcactccaccgacggttctgacgatgatgacgacgacccgcggcgtatcacctattcctgctgggcaggcagggtggatggcaccgggccgtggagatcggagcaaggtggtggccggccgtttggaggggccaatggatcggcaggcggtctccctgggcgcttctggggagtttcgcacatggtgcagcgcgtggcgaatgaggcaggtgaggccagcacgttgcctcatcctgccgcGgtggtggagaatgtcgcgcaggtgttggaggcGGggacggagattgtggtggcggggcatgaggtgcaggacaggatggaagctgtgacagaggcgttggtgacggggatagatgctgcggtggcggggatagaggatgcggtggtggggacgcaggagtcggcagcgacgacagcaatcatagctgccccttccactGggatttggttctcgccgcaggcacggcaaccgccagcgccagaagaagaagagctgcatgtcactcagtcatatGccccgtccattgttggctgtcccctgccggcaaaggaagtgcaacgcagcccatcggcggttcaactgcgccgggatgaagaGgagacgcagcatcatcccagtttgtcgctGgaggaattagaggggggcggggtgatgaatatcaagacccaggtggagaagtcaccGgcgcaaaacagatcggggcccgagtccggcgaggactctccgctagcccggtgtgaacacggcggcgactctggtcggggcgcaacaaatgagggatggggccattggccggtgcgcccagccactgcgccagctacagtacggatatcacgcgtcttcaacactcttgccaagaaattgcaatttgaggatctggagcaagatcacgcagctcagctgccagcattaatgactaccccgtcgggagaagttatagagcagagagaagacgaaggcgggaactccttttcgacttcaggcgggaacagggtaggaccaggccaagaggaaaccctcgatgctgccgctGgtactggtactcaccagaatggagtgcaaatccaagtccacatctcccccctgtccatctccacagctgaagaacgagaacaagctcatgggctag
More
|
||||||||||
| CDS seq | atgtgtggcttccagatttgtGccgagcagccgccgcgctttctggaagaatggcggactggagaaccagaccttcggccggaaaggggaaactgcaccatttcctggactccgcacatggtcgagatggaggccatcttcgagcagaaagctctactggccacggtgcttgggcggcagccggcggtgtcgccaagggagatggctacgatgctcgtcgactgtggcatccttccttcgaacttccGggtggaggtaacgacccctgaggactacctcattgtattccgtcatgccagggatagggagtgggtgctagaaaaatccaagcaagttctcttccaagaggcaCcgatctccttccGgcgctgggacaggcgcctccaggccaggagctcacgcatgcagtttttcacaaagatgtccttcgaggggctacctcagcatgcttgggacgattctgcactagcccaggtgattcgggagcttggaggcgagctcgtggagatggtgtcgccggcggatgccagggtgctcacagtattcgcctggctgaagaatccaagtagggtgcccaagatccttgaggtggagatcccagagcgggcgggaggcggcccgtctcgctgggacaggcgtctaggggcaaccctcgtcccaagggcgcccctgcgtaagcgatgcctaacctacgacatcatcgtccatattgaggaggtcatcgacccaaCaccgttgcactccaccgacggttctgacgatgatgacgacgacccgcggcgtatcacctattcctgctgggcaggcagggtggatggcaccgggccgtggagatcggagcaaggtggtggccggccgtttggaggggccaatggatcggcaggcggtctccctgggcgcttctggggagtttcgcacatggtgcagcgcgtggcgaatgaggcaggtgaggccagcacgttgcctcatcctgccgcGgtggtggagaatgtcgcgcaggtgttggaggcGGggacggagattgtggtggcggggcatgaggtgcaggacaggatggaagctgtgacagaggcgttggtgacggggatagatgctgcggtggcggggatagaggatgcggtggtggggacgcaggagtcggcagcgacgacagcaatcatagctgccccttccactGggatttggttctcgccgcaggcacggcaaccgccagcgccagaagaagaagagctgcatgtcactcagtcatatGccccgtccattgttggctgtcccctgccggcaaaggaagtgcaacgcagcccatcggcggttcaactgcgccgggatgaagaGgagacgcagcatcatcccagtttgtcgctGgaggaattagaggggggcggggtgatgaatatcaagacccaggtggagaagtcaccGgcgcaaaacagatcggggcccgagtccggcgaggactctccgctagcccggtgtgaacacggcggcgactctggtcggggcgcaacaaatgagggatggggccattggccggtgcgcccagccactgcgccagctacagtacggatatcacgcgtcttcaacactcttgccaagaaattgcaatttgaggatctggagcaagatcacgcagctcagctgccagcattaatgactaccccgtcgggagaagttatagagcagagagaagacgaaggcgggaactccttttcgacttcaggcgggaacaggctgaagaacgagaacaagctcatgggctag
More
|
||||||||||
| Protein seq | MCGFQICAEQPPRFLEEWRTGEPDLRPERGNCTISWTPHMVEMEAIFEQKALLATVLGRQPAVSPREMATMLVDCGILPSNFRVEVTTPEDYLIVFRHARDREWVLEKSKQVLFQEAPISFRRWDRRLQARSSRMQFFTKMSFEGLPQHAWDDSALAQVIRELGGELVEMVSPADARVLTVFAWLKNPSRVPKILEVEIPERAGGGPSRWDRRLGATLVPRAPLRKRCLTYDIIVHIEEVIDPTPLHSTDGSDDDDDDPRRITYSCWAGRVDGTGPWRSEQGGGRPFGGANGSAGGLPGRFWGVSHMVQRVANEAGEASTLPHPAAVVENVAQVLEAGTEIVVAGHEVQDRMEAVTEALVTGIDAAVAGIEDAVVGTQESAATTAIIAAPSTGIWFSPQARQPPAPEEEELHVTQSYAPSIVGCPLPAKEVQRSPSAVQLRRDEEETQHHPSLSLEELEGGGVMNIKTQVEKSPAQNRSGPESGEDSPLARCEHGGDSGRGATNEGWGHWPVRPATAPATVRISRVFNTLAKKLQFEDLEQDHAAQLPALMTTPSGEVIEQREDEGGNSFSTSGGNRLKNENKLMG |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0023250 | OsNaBo_11g0023250.01 | Chr11 | 28968480 | 28970346 | + | NAM | ||
| CDS seq | atgtgtggcttccagatttgtGccgagcagccgccgcgctttctggaagaatggcggactggagaaccagaccttcggccggaaaggggaaactgcaccatttcctggactccgcacatggtcgagatggaggccatcttcgagcagaaagctctactggccacggtgcttgggcggcagccggcggtgtcgccaagggagatggctacgatgctcgtcgactgtggcatccttccttcgaacttccGggtggaggtaacgacccctgaggactacctcattgtattccgtcatgccagggatagggagtgggtgctagaaaaatccaagcaagttctcttccaagaggcaCcgatctccttccGgcgctgggacaggcgcctccaggccaggagctcacgcatgcagtttttcacaaagatgtccttcgaggggctacctcagcatgcttgggacgattctgcactagcccaggtgattcgggagcttggaggcgagctcgtggagatggtgtcgccggcggatgccagggtgctcacagtattcgcctggctgaagaatccaagtagggtgcccaagatccttgaggtggagatcccagagcgggcgggaggcggcccgtctcgctgggacaggcgtctaggggcaaccctcgtcccaagggcgcccctgcgtaagcgatgcctaacctacgacatcatcgtccatattgaggaggtcatcgacccaaCaccgttgcactccaccgacggttctgacgatgatgacgacgacccgcggcgtatcacctattcctgctgggcaggcagggtggatggcaccgggccgtggagatcggagcaaggtggtggccggccgtttggaggggccaatggatcggcaggcggtctccctgggcgcttctggggagtttcgcacatggtgcagcgcgtggcgaatgaggcaggtgaggccagcacgttgcctcatcctgccgcGgtggtggagaatgtcgcgcaggtgttggaggcGGggacggagattgtggtggcggggcatgaggtgcaggacaggatggaagctgtgacagaggcgttggtgacggggatagatgctgcggtggcggggatagaggatgcggtggtggggacgcaggagtcggcagcgacgacagcaatcatagctgccccttccactGggatttggttctcgccgcaggcacggcaaccgccagcgccagaagaagaagagctgcatgtcactcagtcatatGccccgtccattgttggctgtcccctgccggcaaaggaagtgcaacgcagcccatcggcggttcaactgcgccgggatgaagaGgagacgcagcatcatcccagtttgtcgctGgaggaattagaggggggcggggtgatgaatatcaagacccaggtggagaagtcaccGgcgcaaaacagatcggggcccgagtccggcgaggactctccgctagcccggtgtgaacacggcggcgactctggtcggggcgcaacaaatgagggatggggccattggccggtgcgcccagccactgcgccagctacagtacggatatcacgcgtcttcaacactcttgccaagaaattgcaatttgaggatctggagcaagatcacgcagctcagctgccagcattaatgactaccccgtcgggagaagttatagagcagagagaagacgaaggcgggaactccttttcgacttcaggcgggaacaggctgaagaacgagaacaagctcatgggctag
More
|
|||||||
| Protein seq | MCGFQICAEQPPRFLEEWRTGEPDLRPERGNCTISWTPHMVEMEAIFEQKALLATVLGRQPAVSPREMATMLVDCGILPSNFRVEVTTPEDYLIVFRHARDREWVLEKSKQVLFQEAPISFRRWDRRLQARSSRMQFFTKMSFEGLPQHAWDDSALAQVIRELGGELVEMVSPADARVLTVFAWLKNPSRVPKILEVEIPERAGGGPSRWDRRLGATLVPRAPLRKRCLTYDIIVHIEEVIDPTPLHSTDGSDDDDDDPRRITYSCWAGRVDGTGPWRSEQGGGRPFGGANGSAGGLPGRFWGVSHMVQRVANEAGEASTLPHPAAVVENVAQVLEAGTEIVVAGHEVQDRMEAVTEALVTGIDAAVAGIEDAVVGTQESAATTAIIAAPSTGIWFSPQARQPPAPEEEELHVTQSYAPSIVGCPLPAKEVQRSPSAVQLRRDEEETQHHPSLSLEELEGGGVMNIKTQVEKSPAQNRSGPESGEDSPLARCEHGGDSGRGATNEGWGHWPVRPATAPATVRISRVFNTLAKKLQFEDLEQDHAAQLPALMTTPSGEVIEQREDEGGNSFSTSGGNRLKNENKLMG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44890 | SBH | 0.0 | 0.0 | 0.109406 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015820 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023820 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023000 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022800 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0039240 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0409400 | SBH | 0.0970305 | 0.02587 | 1.285422 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023840 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0428300 | SBH | 0.12336 | 0.0242725 | 4.070275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0039210 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0039130 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023180 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022570 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022810 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0024480 | RBH | 0.0 | 0.0 | 0.0 |
