Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0198800 | OGI:08015100 | 10/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:5706417-5709046 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACGCACAGAATCCCTGCGACCCCTATCATTTAGCCCCCGAACATTCCAGACAAGGAAATTAAAATTGCAGTTCGACATAAAAAAGAAAAGGGGGCGACCAAAAAACAGCGAGACTGTGGCTCAGGCCGCCTTCAATGGCGAGATGACCACCGCGCTGGCAGGAGGCGGTAGACAAATGCCAAAGAGGTCGGCCAGCGCCAACATCTGATCCTGAGACAGCTCCTTCTCGAACAGCTCGTTGTACTGCTGGATAGTACACACAGTCGGTGCAGGCGCAGCTGGGACAGCAGTATCCTTCTCCCCCATCTTCTTAGCTAACACTGACTGGCAGCGGGAGAAAGTTGGGGCGCCATGTGTCGCTTGAAGCGCTTGACGCACACTGCGACGCGGCGTCTGCAGCGGCGCTGGTTGCGGCGGCTGCTGAGGGGCTGGTGGGGGAAGCAGTGCCGGGGGGATTGCTTTCTTGGCTCTCCTGGAGAAGGTGATAAGCGTCGGCGGCGGAGCTGAAGCCTCCTCCACAGCCGCTGCGAACACGGCAGTAGATGGAGCAGGCGGAGATGCGGCCATCTCATCTACCGGAACGACCTCATCGGGAAACGGCCCCCCGATCTCAGCTACCACGACCACCGCGGAGGCAGTCGGCAAAGCCGAGACCGGAGAGAAAACTTGTGATAACGGCGTCGAGGACGCCGCCAAATGCTGTTCTGGGCACACCAAAGGAGCAGAGACAGCCTCCACTCCAAGTGTCGCGTCTGGCACGGAGTCAGGCGGCGGAAGCGCTGACTCACCCGGCGCTGCCATTGCCATGCTTGGCTTTGCTGCCAGAACGACCGAGAGGAACGGGTCTGCATGGGCTGAAACAGACCCTTGAAGGAAGGTAGAAGCGTCATGGTGGGCCTCCTCCATTGCTAGCGGGCTGGGCTGTGACTGCACCTCAGGCCGAGACCCAGCTGACTCAACAGCCGGCCCAGCGACAGTCGATAGCACCAAACCGCCTTGTTGGGCCTCCAACCCAACTGGAGAGGCGGCCAGCCCAACCTGGGTCGTCGAGAAGCTTCCTCGAGCATCGGATCGTGCGCCTCCGGAACTGGGCAGTCCGTACGCCAGTCTGTACGCCAACAGCACTCCCACGAGGCGTCAGGGGGTAGTGGGGACTGACAGACCATGTCTCTCCTCGAAGAGACTGCCGAATCAGCCTCAGACGCCGCGCTCACAGGCAAGACAAACTCCCTGTCCTCCTGCCCCACCACAGAGCCAAGAGACAGAGATTGCAGAGCAGAACTCTCCTTTGCCTTTGCGACCGAGACCGGCTCAGAAGTGTCTTGTCCTTTTCGTGGCTGCCACCTGCAACAGCTGCGAACAGGGCTAAGCTTTAAGAACTTGCTTTTCCACTTTAGCACCTTTTGCTGACGTCGCCGACCACGAGGCCTCCTCCGCCGCGCCATGGCCGCCTCCGCGCCGGCCACAGCCCGGACAGGCTTCTCCGGCGCCAGCGCCCCAGCCCGCCGAAGAAGGCGGCCGGAACAGAGCTCCGCCGGCATCACCGCCACCGGAGCGGCCCTGTGCCCACCGCCTCCACCGCCGCCTGTCGAGCCCTGACCGGACTGCGGCGGAGGGGGGGAACCATCTCGTCGACCTCTGGAGGTGTGGAAGAAGTGCCGTCGAGGAGGGCCGTCGTCCGAGTCGTCCGAGCTAGGGCGACCAGAATCACCGCTGGACGGCGCGAAAGGGAGGTACGGCTCCGGCGGCGAGATGTGATCCTCCATGGCGGTGAGGTGGATGAGAACGACGTAGTCGAGGTAGCGCTCACAGGTGCCCTGCGGCGTGACAACCGGGCCACCATCCTCGACAATGCGCAGCCATTTCTCCTTCGGGATGGAGGCAGGGTCGGAGGTCCAAGCGTAGAGCTTGAAGACCGCCATGTCACTGGCTGAGGAACTGACCGGATCACAGGAGATGATACGGCAGGAAGAACCGAGCACCGCAGCCGCCGTCGCCTCATCCCAGGCGTGACCGGGGATCCCTTCCAGGTGCAGCCGCACCCGGAAAAGCATCGACCCCTCCCTCGCATGCAGCTGCCTCGACCAAGGCGCGACCAAGAGACGGAACTGACCGAGAGGGATGGAGCGGCGGCGCGCAACACGGTCGAAGATTTCGTCGGACTGGAAGGTGACGAGGAAATCCTCCGGGAAGAAACGGCGTACCGAGAAGCTGTGAGGAGACAGAGAGAACTCCGAGCATAGCTCGTCGTGCACCTGGGCCGCGGACGGCGTACGAGCCGCCCCAACCACCACCGCCACCACCGCCCGCCGGAGCTGCGCCTCCCGCTCCCTCATCGCGGCCGAGAACGGCAGCACACAGATCTCCCTGTTTACCCGGAGCTCCGGGTCGCCAGGTGGAACATGCTCGAACTCCGAAGGGGGGTTTGCGCGCGCCGGCGACAGAGAGGCGCAGCCACGCTCCGCGCATTCAACCGGCGACCGAGGGGGTGAGCATGACGGCGAAGAGAACGGCACGGGTGGGTCGACGGAGGGACTTCTTGGCGGCGTTGGCCCCCTGAAGCCACGCGGGGTCGGCGGACTGAGCGGCGAGACAACGCGCCTCCGCTGCGCAGGCCTGTCTCAGGCACT
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| CDS seq | GACAGGCCTGCGCAGCGGAGGCGCGTTGTCTCGCCGCTCAGTCCGCCGACCCCGCGTGGCTTCAGGGGGCCAACGCCGCCAAGAAGTCCCTCCGTCGACCCACCCGTGCCGTTCTCTTCGCCGTCATGCTCACCCCCTCGGTCGCCGGTTGAATGCGCGGAGCGTGGCTGCGCCTCTCTGTCGCCGGCGCGCGCAAACCCCCCTTCGGAGTTCGAGCATGTTCCACCTGGCGACCCGGAGCTCCGGGTAAACAGGGAGATCTGTGTGCTGCCGTTCTCGGCCGCGATGAGGGAGCGGGAGGCGCAGCTCCGGCGGGCGGTGGTGGCGGTGGTGGTTGGGGCGGCTCGTACGCCGTCCGCGGCCCAGGTGCACGACGAGCTATGCTCGGAGTTCTCTCTGTCTCCTCACAGCTTCTCGGTACGCCGTTTCTTCCCGGAGGATTTCCTCGTCACCTTCCAGTCCGACGAAATCTTCGACCGTGTTGCGCGCCGCCGCTCCATCCCTCTCGGTCAGTTCCGTCTCTTGGTCGCGCCTTGGTCGAGGCAGCTGCATGCGAGGGAGGGGTCGATGCTTTTCCGGGTGCGGCTGCACCTGGAAGGGATCCCCGGTCACGCCTGGGATGAGGCGACGGCGGCTGCGGTGCTCGGTTCTTCCTGCCGTATCATCTCCTGTGATCCGGTCAGTTCCTCAGCCAGTGACATGGCGGTCTTCAAGCTCTACGCTTGGACCTCCGACCCTGCCTCCATCCCGAAGGAGAAATGGCTGCGCATTGTCGAGGATGGTGGCCCGGTTGTCACGCCGCAGGGCACCTGTGAGCGCTACCTCGACTACGTCGTTCTCATCCACCTCACCGCCATGGAGGATCACATCTCGCCGCCGGAGCCGTACCTCCCTTTCGCGCCGTCCAGCGGTGATTCTGGTCGCCCTAGCTCGGACGACTCGGACGACGGCCCTCCTCGACGGCACTTCTTCCACACCTCCAGAGGTCGACGAGATGGTTCCCCCCCTCCGCCGCAGTCCGGTCAGGGCTCGACAGGCGGCGGTGGAGGCGGTGGGCACAGGGCCGCTCCGGTGGCGGTGATGCCGGCGGAGCTCTGTTCCGGCCGCCTTCTTCGGCGGGCTGGGGCGCTGGCGCCGGAGAAGCCTGTCCGGGCTGTGGCCGGCGCGGAGGCGGCCATGGCGCGGCGGAGGAGGCCTCGTGGTCGGCGACGTCAGCAAAAGGTGCTAAAGTGGAAAAGCAAGTTCTTAAAGCTTAGCCCTGTTCGCAGCTGTTGCAGGTGGCAGCCACGAAAAGGACAAGACACTTCTGAGCCGGTCTCGGTCGCAAAGGCAAAGGAGAGTTCTGCTCTGCAATCTCTGTCTCTTGGCTCTGTGGTGGGGCAGGAGGACAGGGAGTTTGTCTTGCCTGTGAGCGCGGCGTCTGAGGCTGATTCGGCAGTCTCTTCGAGGAGAGACATGGTCTGTCAGTCCCCACTACCCCCTGACGCCTCGTGGGAGTGCTGTTGGCGTACAGACTGGCGTACGGACTGCCCAGTTCCGGAGGCGCACGATCCGATGCTCGAGGAAGCTTCTCGACGACCCAGGTTGGGCTGGCCGCCTCTCCAGTTGGGTTGGAGGCCCAACAAGGCGGTTTGGTGCTATCGACTGTCGCTGGGCCGGCTGTTGAGTCAGCTGGGTCTCGGCCTGAGGTGCAGTCACAGCCCAGCCCGCTAG
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| Protein seq | DRPAQRRRVVSPLSPPTPRGFRGPTPPRSPSVDPPVPFSSPSCSPPRSPVECAERGCASLSPARANPPSEFEHVPPGDPELRVNREICVLPFSAAMREREAQLRRAVVAVVVGAARTPSAAQVHDELCSEFSLSPHSFSVRRFFPEDFLVTFQSDEIFDRVARRRSIPLGQFRLLVAPWSRQLHAREGSMLFRVRLHLEGIPGHAWDEATAAAVLGSSCRIISCDPVSSSASDMAVFKLYAWTSDPASIPKEKWLRIVEDGGPVVTPQGTCERYLDYVVLIHLTAMEDHISPPEPYLPFAPSSGDSGRPSSDDSDDGPPRRHFFHTSRGRRDGSPPPPQSGQGSTGGGGGGGHRAAPVAVMPAELCSGRLLRRAGALAPEKPVRAVAGAEAAMARRRRPRGRRRQQKVLKWKSKFLKLSPVRSCCRWQPRKGQDTSEPVSVAKAKESSALQSLSLGSVVGQEDREFVLPVSAASEADSAVSSRRDMVCQSPLPPDASWECCWRTDWRTDCPVPEAHDPMLEEASRRPRLGWPPLQLGWRPNKAVWCYRLSLGRLLSQLGLGLRCSHSPAR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0198800 | OsNip_08t0198800-01 | Chr08 | 5706417 | 5709046 | - | RAP2018-11-26 | ||
| CDS seq | GACAGGCCTGCGCAGCGGAGGCGCGTTGTCTCGCCGCTCAGTCCGCCGACCCCGCGTGGCTTCAGGGGGCCAACGCCGCCAAGAAGTCCCTCCGTCGACCCACCCGTGCCGTTCTCTTCGCCGTCATGCTCACCCCCTCGGTCGCCGGTTGAATGCGCGGAGCGTGGCTGCGCCTCTCTGTCGCCGGCGCGCGCAAACCCCCCTTCGGAGTTCGAGCATGTTCCACCTGGCGACCCGGAGCTCCGGGTAAACAGGGAGATCTGTGTGCTGCCGTTCTCGGCCGCGATGAGGGAGCGGGAGGCGCAGCTCCGGCGGGCGGTGGTGGCGGTGGTGGTTGGGGCGGCTCGTACGCCGTCCGCGGCCCAGGTGCACGACGAGCTATGCTCGGAGTTCTCTCTGTCTCCTCACAGCTTCTCGGTACGCCGTTTCTTCCCGGAGGATTTCCTCGTCACCTTCCAGTCCGACGAAATCTTCGACCGTGTTGCGCGCCGCCGCTCCATCCCTCTCGGTCAGTTCCGTCTCTTGGTCGCGCCTTGGTCGAGGCAGCTGCATGCGAGGGAGGGGTCGATGCTTTTCCGGGTGCGGCTGCACCTGGAAGGGATCCCCGGTCACGCCTGGGATGAGGCGACGGCGGCTGCGGTGCTCGGTTCTTCCTGCCGTATCATCTCCTGTGATCCGGTCAGTTCCTCAGCCAGTGACATGGCGGTCTTCAAGCTCTACGCTTGGACCTCCGACCCTGCCTCCATCCCGAAGGAGAAATGGCTGCGCATTGTCGAGGATGGTGGCCCGGTTGTCACGCCGCAGGGCACCTGTGAGCGCTACCTCGACTACGTCGTTCTCATCCACCTCACCGCCATGGAGGATCACATCTCGCCGCCGGAGCCGTACCTCCCTTTCGCGCCGTCCAGCGGTGATTCTGGTCGCCCTAGCTCGGACGACTCGGACGACGGCCCTCCTCGACGGCACTTCTTCCACACCTCCAGAGGTCGACGAGATGGTTCCCCCCCTCCGCCGCAGTCCGGTCAGGGCTCGACAGGCGGCGGTGGAGGCGGTGGGCACAGGGCCGCTCCGGTGGCGGTGATGCCGGCGGAGCTCTGTTCCGGCCGCCTTCTTCGGCGGGCTGGGGCGCTGGCGCCGGAGAAGCCTGTCCGGGCTGTGGCCGGCGCGGAGGCGGCCATGGCGCGGCGGAGGAGGCCTCGTGGTCGGCGACGTCAGCAAAAGGTGCTAAAGTGGAAAAGCAAGTTCTTAAAGCTTAGCCCTGTTCGCAGCTGTTGCAGGTGGCAGCCACGAAAAGGACAAGACACTTCTGAGCCGGTCTCGGTCGCAAAGGCAAAGGAGAGTTCTGCTCTGCAATCTCTGTCTCTTGGCTCTGTGGTGGGGCAGGAGGACAGGGAGTTTGTCTTGCCTGTGAGCGCGGCGTCTGAGGCTGATTCGGCAGTCTCTTCGAGGAGAGACATGGTCTGTCAGTCCCCACTACCCCCTGACGCCTCGTGGGAGTGCTGTTGGCGTACAGACTGGCGTACGGACTGCCCAGTTCCGGAGGCGCACGATCCGATGCTCGAGGAAGCTTCTCGACGACCCAGGTTGGGCTGGCCGCCTCTCCAGTTGGGTTGGAGGCCCAACAAGGCGGTTTGGTGCTATCGACTGTCGCTGGGCCGGCTGTTGAGTCAGCTGGGTCTCGGCCTGAGGTGCAGTCACAGCCCAGCCCGCTAG
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| Protein seq | DRPAQRRRVVSPLSPPTPRGFRGPTPPRSPSVDPPVPFSSPSCSPPRSPVECAERGCASLSPARANPPSEFEHVPPGDPELRVNREICVLPFSAAMREREAQLRRAVVAVVVGAARTPSAAQVHDELCSEFSLSPHSFSVRRFFPEDFLVTFQSDEIFDRVARRRSIPLGQFRLLVAPWSRQLHAREGSMLFRVRLHLEGIPGHAWDEATAAAVLGSSCRIISCDPVSSSASDMAVFKLYAWTSDPASIPKEKWLRIVEDGGPVVTPQGTCERYLDYVVLIHLTAMEDHISPPEPYLPFAPSSGDSGRPSSDDSDDGPPRRHFFHTSRGRRDGSPPPPQSGQGSTGGGGGGGHRAAPVAVMPAELCSGRLLRRAGALAPEKPVRAVAGAEAAMARRRRPRGRRRQQKVLKWKSKFLKLSPVRSCCRWQPRKGQDTSEPVSVAKAKESSALQSLSLGSVVGQEDREFVLPVSAASEADSAVSSRRDMVCQSPLPPDASWECCWRTDWRTDCPVPEAHDPMLEEASRRPRLGWPPLQLGWRPNKAVWCYRLSLGRLLSQLGLGLRCSHSPAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09890 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0198800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006390 | RBH | 0.0 | 0.0 | 0.178124 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006370 | RBH | 0.0 | 0.466352 | 0.071566 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006460 | RBH | 0.0 | 1.550908 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006350 | RBH | 0.022457 | 0.143964 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010330 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0087200 | RBH | 0.004917 | 0 | 0.0810185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006090 | RBH | 0.027792 | 0.039670 | 0.021329 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006060 | RBH | 0.0 | 0.026050 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006110 | RBH | 0.059608 | 1.607182 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006050 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0010720 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0010050 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G010190 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0010170 | RBH | 0.0 | 0.0 | 0.0 |
