Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0028280 | OGI:05078630 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:29962687-29963096 | ||||||||
| Gene Symbol | TPP8, OsTPP8, OsTPP2 | ||||||||||
| DNA seq | cgcctccgccacccgatagaagtacaccaacgctggggcgcacgtgttcgtgacgatgctcctgaccgtggtgttcacggcagctgtggcgttgactcttgtcaacgccgtcaactcgcatgacttcgcagcacacctcgccggcgtggactgccgcatggggctagctggtccagttcgatgcctagcctcgggcttcgtggagctcctcgtgctggcgctacatgtggttagatgcgtgctcgccatcttagatcgcctgcatgcctgcctaatgtcgccctcgctacagctttcgattgcatctccatgtacgcacgccggtggcagcgcggcgaagtgaccaatgtacatgaagtatacgtgctaagtaggatcgaatttgttccttatatggtgaacactaacag
More
|
||||||||||
| CDS seq | atgctcctgaccgtggtgttcacggcagctgtggcgttgactcttgtcaacgccgtcaactcgcatgacttcgcagcacacctcgccggcgtggactgccgcatggggctagctggtccagttcgatgcctagcctcgggcttcgtggagctcctcgtgctggcgctacatgtggttagatgcgtgctcgccatcttagatcgcctgcatgcctgcctaatgtcgccctcgctacagctttcgattgcatctccatgtacgcacgccggtggcagcgcggcgaagtga |
||||||||||
| Protein seq | MLLTVVFTAAVALTLVNAVNSHDFAAHLAGVDCRMGLAGPVRCLASGFVELLVLALHVVRCVLAILDRLHACLMSPSLQLSIASPCTHAGGSAAK |
||||||||||
| Function | Probable trehalose-phosphate phosphatase 8 [UniProtKB/Swiss-Prot:Q0DDI1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0028280 | OsNaBo_05g0028280.01 | Chr05 | 29962687 | 29963096 | + | NAM | ||
| CDS seq | atgctcctgaccgtggtgttcacggcagctgtggcgttgactcttgtcaacgccgtcaactcgcatgacttcgcagcacacctcgccggcgtggactgccgcatggggctagctggtccagttcgatgcctagcctcgggcttcgtggagctcctcgtgctggcgctacatgtggttagatgcgtgctcgccatcttagatcgcctgcatgcctgcctaatgtcgccctcgctacagctttcgattgcatctccatgtacgcacgccggtggcagcgcggcgaagtga
More
|
|||||||
| Protein seq | MLLTVVFTAAVALTLVNAVNSHDFAAHLAGVDCRMGLAGPVRCLASGFVELLVLALHVVRCVLAILDRLHACLMSPSLQLSIASPCTHAGGSAAK |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0586700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50940 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0586700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028490 | SBH | 1.581802 | 10.798242 | 7.246579 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028280 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028280 | SBH | 2.474766 | 12.696512 | 14.353620 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028340 | SBH | 0.475541 | 0.286392 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028230 | SBH | 1.359025 | 2.740558 | 3.289575 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0454000 | RBH | 0.0395915 | 0.0086875 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027970 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0467000 | RBH | 0.025116 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028080 | RBH | 0.181022 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027960 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028200 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028260 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027750 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
