Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g50940 | OGI:05079110 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:29228254-29229250 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTGAAGCTAGCCACCGCCAGGGAGGCGCGCATGTACGGTCCGGCGCTGGCCGTGCGGCGGTGGGAGTACATCAACGCCGGGGCGTACGTGTTCGCGGCGCTGCTCTTGGCCGTGGCGCTCGCGGCGCTGTCCGCGGGCGGCGGGGGCGGGGGCGGGGCCAGCAGGGCGGCGCTCGCCGTGGCCGCCGTGGCGCTGGCGCTCGTCGCCGCCGTCAACGCGCACGACCTCGCGGCGCACCTCGCCGGCGTGGACTGCCGCGTGGGGCTGGTCAGGTACGACGCCCAGCTCGGCCTCGTGGAGCTCCTCGTGCCGGCGCTGCACGTGGCTGGGTGCGTCCTCGCCGTCGTCGCCATGGCCTTTCTGCTCTCCCAGGTGCGTTTCAGATAGCTAGATCGTTGGCAAAAGTGCACAACGCGCATGGCGATCACTCTGCTTTGACATGGAACAGGGCGAGAGGGAGACGCACGCGGCGAACACGCTGCTCGCCGCGGCGCTGGTGTGGCTGCTGGGGTCGATACTCAACTCGTGCCAGGTGTACGAGCGCGCCGACGGGCGGGCGCAGCTGCTGCAGTCGAGCGTGCAGGTGCCGATGCTTCTCGGGAGCCTGCTCTTCCTGGTCGGCGCCGTCGTCAACCGCCGACGACGCCCCGAGCCGCCGGTGCTAGTGGTAAGCGCGCGATCCATTCGATCGAGCAACCTCGCCGCCGGCGTTGGCATGCACGACGCCATGACAAAACCGTGTGGTTTGACTGTCACGCAGGGGCGGAGCTGGGCGTGGACGATGTGCGTGTTGGGGAGCGTGCTGTGGCTGGTGGCGGCGGTGTTCAACATGGGGAAGGTGTTCGTGATGCACCAGAGCGACGCGCCGCGGCTGGAGAAGCTGCGCGGCGGCGCGCAGGAGCGGCTGAGCCGTGACCGGGAGGGACGCTTGCCGCTCAACTGGGAGGAGGCCGCTAGGAGCCGGAGGGTTGCGCTGCCCGCCGAGCTGCGCTGA
More
|
||||||||||
| CDS seq | ATGGTGAAGCTAGCCACCGCCAGGGAGGCGCGCATGTACGGTCCGGCGCTGGCCGTGCGGCGGTGGGAGTACATCAACGCCGGGGCGTACGTGTTCGCGGCGCTGCTCTTGGCCGTGGCGCTCGCGGCGCTGTCCGCGGGCGGCGGGGGCGGGGGCGGGGCCAGCAGGGCGGCGCTCGCCGTGGCCGCCGTGGCGCTGGCGCTCGTCGCCGCCGTCAACGCGCACGACCTCGCGGCGCACCTCGCCGGCGTGGACTGCCGCGTGGGGCTGGTCAGGTACGACGCCCAGCTCGGCCTCGTGGAGCTCCTCGTGCCGGCGCTGCACGTGGCTGGGTGCGTCCTCGCCGTCGTCGCCATGGCCTTTCTGCTCTCCCAGGGCGAGAGGGAGACGCACGCGGCGAACACGCTGCTCGCCGCGGCGCTGGTGTGGCTGCTGGGGTCGATACTCAACTCGTGCCAGGTGTACGAGCGCGCCGACGGGCGGGCGCAGCTGCTGCAGTCGAGCGTGCAGGTGCCGATGCTTCTCGGGAGCCTGCTCTTCCTGGTCGGCGCCGTCGTCAACCGCCGACGACGCCCCGAGCCGCCGGTGCTAGTGGGGCGGAGCTGGGCGTGGACGATGTGCGTGTTGGGGAGCGTGCTGTGGCTGGTGGCGGCGGTGTTCAACATGGGGAAGGTGTTCGTGATGCACCAGAGCGACGCGCCGCGGCTGGAGAAGCTGCGCGGCGGCGCGCAGGAGCGGCTGAGCCGTGACCGGGAGGGACGCTTGCCGCTCAACTGGGAGGAGGCCGCTAGGAGCCGGAGGGTTGCGCTGCCCGCCGAGCTGCGCTGA
More
|
||||||||||
| Protein seq | MVKLATAREARMYGPALAVRRWEYINAGAYVFAALLLAVALAALSAGGGGGGGASRAALAVAAVALALVAAVNAHDLAAHLAGVDCRVGLVRYDAQLGLVELLVPALHVAGCVLAVVAMAFLLSQGERETHAANTLLAAALVWLLGSILNSCQVYERADGRAQLLQSSVQVPMLLGSLLFLVGAVVNRRRRPEPPVLVGRSWAWTMCVLGSVLWLVAAVFNMGKVFVMHQSDAPRLEKLRGGAQERLSRDREGRLPLNWEEAARSRRVALPAELR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g50940 | LOC_Os05g50940.1 | Chr05 | 29228254 | 29229250 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGAAGCTAGCCACCGCCAGGGAGGCGCGCATGTACGGTCCGGCGCTGGCCGTGCGGCGGTGGGAGTACATCAACGCCGGGGCGTACGTGTTCGCGGCGCTGCTCTTGGCCGTGGCGCTCGCGGCGCTGTCCGCGGGCGGCGGGGGCGGGGGCGGGGCCAGCAGGGCGGCGCTCGCCGTGGCCGCCGTGGCGCTGGCGCTCGTCGCCGCCGTCAACGCGCACGACCTCGCGGCGCACCTCGCCGGCGTGGACTGCCGCGTGGGGCTGGTCAGGTACGACGCCCAGCTCGGCCTCGTGGAGCTCCTCGTGCCGGCGCTGCACGTGGCTGGGTGCGTCCTCGCCGTCGTCGCCATGGCCTTTCTGCTCTCCCAGGGCGAGAGGGAGACGCACGCGGCGAACACGCTGCTCGCCGCGGCGCTGGTGTGGCTGCTGGGGTCGATACTCAACTCGTGCCAGGTGTACGAGCGCGCCGACGGGCGGGCGCAGCTGCTGCAGTCGAGCGTGCAGGTGCCGATGCTTCTCGGGAGCCTGCTCTTCCTGGTCGGCGCCGTCGTCAACCGCCGACGACGCCCCGAGCCGCCGGTGCTAGTGGGGCGGAGCTGGGCGTGGACGATGTGCGTGTTGGGGAGCGTGCTGTGGCTGGTGGCGGCGGTGTTCAACATGGGGAAGGTGTTCGTGATGCACCAGAGCGACGCGCCGCGGCTGGAGAAGCTGCGCGGCGGCGCGCAGGAGCGGCTGAGCCGTGACCGGGAGGGACGCTTGCCGCTCAACTGGGAGGAGGCCGCTAGGAGCCGGAGGGTTGCGCTGCCCGCCGAGCTGCGCTGA
More
|
|||||||
| Protein seq | MVKLATAREARMYGPALAVRRWEYINAGAYVFAALLLAVALAALSAGGGGGGGASRAALAVAAVALALVAAVNAHDLAAHLAGVDCRVGLVRYDAQLGLVELLVPALHVAGCVLAVVAMAFLLSQGERETHAANTLLAAALVWLLGSILNSCQVYERADGRAQLLQSSVQVPMLLGSLLFLVGAVVNRRRRPEPPVLVGRSWAWTMCVLGSVLWLVAAVFNMGKVFVMHQSDAPRLEKLRGGAQERLSRDREGRLPLNWEEAARSRRVALPAELR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0586700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0586700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028750 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028540 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028600 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028480 | RBH | 23.673864 | 4.211096 | 13.787416 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0456900 | RBH | 2.1887915 | 1.215979 | 1.056322 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028180 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0470000 | RBH | 0.0319465 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028340 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_Ung0000590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028490 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028470 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028520 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G028030 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028550 | RBH | 0.0 | 0.0 | 0.0 |
