Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_05G027750 | OGI:05078630 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr05:29978313-29985560 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCTCCTGACCGTGGTGTTCACGGCAGCTGTGGCGTTGACTCTTGTCAACGCCGTCAACTCGCATGACTTCGCAGCACACCTCGCCGGCGTGGACTGCCGCATGGGGCTAGCTGGTCCAGTTCGATGCCTAGCCTCGGGCTTCGTGGAGCTCCTCGTGCTGGCGCTACATGTGGTTAGATGCGTGCTCGCCATCTTAGATCGCCTGCATGCCTGCCTAATGTCGCCCTCGCTACAGCTTTCGATTGCATCTCCATGTACGCACGCCGGTGGCAGCGCGGCGAAGTGACCAATGTACATGAAGTATACGTGCTAAGTAGGATCGAATTTGTTCCTTATATGGTGAACACTAACAGAAAACCTTTCTCCTTGTTTGTTCAGCAAAGTTGCAGATAAAAATGTCAAACAGAATTATTTTCTTATTGCTTCAAGTCACATTAAGGCTTGGTTTAGTTCCTAACTTTTTCTTTATACTTCCAACTTTTTCATCACATCAAAACTTTCCCACACACACAAACTTCCAACTTTTCCATCACATCGTTTCAATTTTAATCAAACTTCCAATTTTAGCGCGAACTAAACACACCCTAAGCATACTATTGCTACTGCTACTGCTCAAGTTCAGACTTCAGACTTCAAAAAGGCCCCACCAATTCATGAGCTCATAGAGGCTCTGTTTAGTTCACACCAAAATTGGAAGTTTGGTTGAAATTAGAACTATGTGATAGAAAAGTTGGAAGTTTGTGTGTATAGAAAAGTTTTAATGTAATAGAAAAGTTGGAAGTTTGAAGTAAAAGTTAGGAACTAAACACGGCGAAAATCTGATTTGGACCAGTATGTTGATTTAACAACCAGAAAAAAAAATTGGACATGGGCACACCTGTTGCCTCGAACAATATTTTTGCAGCATTAGAACTAGTACATATAAGTTATACAGTCCAGGATGCACTTAATGAATACAGATAGAAAAGGATTACAGGCAAGACTCTGACTAGAAGCTGCAAAAACATCTAAACAGGCAAGCACCGGTGAACAAAGAAGTAGCCGTCGGCGCCGCCGCCGCCGGAATGTATCGGATGGTGCCCTTGCACGCGGCAAAATGGGGAGACAAATGGAGAATGAGTGGGAAAAGAATGGCCGCCGGAGTAGACTGCCGGCGGCGCGAGGATTTGCCGAGCAGTGGAGATGGCTACCGTCAGGAGGAGATCGACGGTGGTGGGAGGATTTGCCGCAGCGAATGGAAGCGTCGTCCAGTCGCCGAGTGCCTAGCGAGATGAATAGATAAAATCCCAAATACCACCATTACCCCTAATCACTAAGTAGTAATGTACTAATATGCCCTTGTGAACCGACGATTCAGATCAATTCTACTACAAAGCACCGGAGCGTCGCTCTTAATTATTATGCTTGGTGTCTGCATTGTAACTGTATCTGCGTTTGATCTTTGCCGATCTGTGAATGTTGTGATTGGACTGAAATTGAGAAGTGAGGTGGTATCAGTATCATATCCGTCGATGTTTTTTGAGTTTTTTTTTATATTTACTCGTGGGCACCAGCACAAGGTCATTGCTATGGCTGAGCTGGAACACCGACCTAAAGTCCCTATGGAAGCTTATCCTCGAGATTAGGCTGGCACCGGCATCGTCCTGCTCCTCCATCCGTCCGTTGTGCCGCCGCCGCCATTGGTAGAGGGTTGATGATCCACTAAAAGTTTCTTCCATGGATCCATGGGATGTGAGGGCTGGAGGTTCTACAGATCGGATGGAGGGGAGGCTGAAGGTTGAAGATGAAGAAGGATTTCGCGATTTGGGCCGGCTACGAAGAGCAGCCCACGACCGCTCAGTCTTCAAAATTTGGTCCGGCCCACTCCGAGCAAACGGCCCACGGTGTCAGCTCACATCAGCCGGCCCCGGCCCAGTCGGCTGACTGCGTTCCCCAATTCGCCACCTCCCCTCTCCCTAACCCCTAACCCCTAACCTACAGGCGCGGGCGACGGCCGTGGACCGGCGGCGAGACGGCCGGCAGCGCGTGGCCCGTGTGCGTGCCGCAAGCAGGCGGCGGCGTCCGGAGAGACGCGAGCGGGCGGGCCAGGCGGCGGTCCAGCGCCGCCGCACGGGTGGGGAGGTCGCGAGCCGTGAGCCAGCGAGGACGCAAGGTGGGCAGGCAGCGGCGCAGCACTTCAGTGGCCGGCAACGACGCAGCGTGTATCAGCAACCCGGTGATTGGAATTGAAATTGAAATCGGTAACCTGCTAACCTCTAATAGTAATACGCAAACCTCTAATACTAATACGCATAGACAGTCTAAAATACTAATACGCATAGACAGTCTAAAATAGTGTCTCAATGGTTCATGTTCAGTGAGGTAGTGATTCAAATTTATAATTGGTTTCTATACATTTTTAGATTGTCAACATGTCAAAAAAGAACACTGCTCACGTATTACGCATTATTCTAGTGTCCCAGCAACACAAATACCAGCGATCCTACATATCATTAGTTAGGTGTATGTCTACTTTGAACTATGACATGTAGCCAATTTATACGTGAGACATGTTTCGATTTATGCTGGCCTAATTTGTTCAGCCCCCACTATTATTTTTTCTTGGATCTGCCCAACCTCCATTGATGATTTTGTTTACCTCTTGCTACGTGTTCACTGTGCGATTTGTTGTGCTGAAAAGTTTTTTGTTCTCTCTCCAAAAGATCTACTGTTAGTCTTTCAAAGTTCAGTTTGAAGTAGTGATTTCTGAATCTCGTCGGGGAAATCAGTCATTTGTTTCGTTGAGCTGTTTGGCGAAGCAACTGTGTCATTTCATTGTGCTAACTGCTAAGATCGTGTCAGTAAAGATTTATGATGTCTACTTGTACTTATGCTGTGACCTGTTTGAGGTCTTATCTTGACATTCTATCTTATTACACTTTGATAATTAAATCGAGAAATTGATTATCTATACTCTTCGTTATGCTAACTGCTAAGATCATGCGAAGATTTATGGTGTCTACTTCTACTTATGCTGTGACCTGTTTGAGATCTTATTATGCTTTAGTAATTATATTGACAAATTAGTTATCTATACTCTTTATTATGCTTTGATAATTATATTGGCAAATTGGTTATCTATACTCTTTTTAAAGAACAAAATAGTGGTGGTGGAGGCAGTTAATTTGCCACCCCACCAACTCTGTCGATATTTTTTTTTACCAACTACTTCTGTTCTGTTCTTAATTTTATTTCTGGGTCTGATTAATTTAAGATGTTGATTACATTGGACATGGCTTGATTTTATTTGTACTAACACCAACAGGTTTTTGGGTTCCACCAGCTGGTCTTTCTTAGGATGTGTGAACCAAGTGGCAGTGATGATGCAATGGTGCATGCCAGTGAGATGGTTGATGGTGATGAGATGATCCACGGCAATGAGATGGTAGTTCATGACAGTGTGATGATCGATGGTAACGAGATGGTTCAAGAGAACGTCATGGTCCATGGGAGTGGTGAGATGGTTCAAGGAAGTGAGATGGTCCATAATAATGAAATCATTCAAGTTAATGACATGATACAAGTCAACGAGATGGTCAATGGTGATAAGATGGCCCATGGTCATGAGTTGGTCGGTGTTGAGTTGACCACGCCAACCGCATCAAGACGCCGGAGAAAAAAGTCAGTTGTCTGGGAGCACTTCACGATTGAAGAAATGCCTGGGGGAGTTTCACGAGCATCCTGCAATCTATGCAAGCAAACCTTCGCATACAGTTGCGGCTCAAAAATTTCAGGTACTAGCCATCTCAAGAGGCATATCACCCTGGCTTCATGTCCCATGTTGAAAAATGAGGATATGAAACTTTCATTGCCTTTAGCGACAGTAACTAACAATGATGGTGAGGGTTGTGCAGAACGTGTTGCTAAAAGGCATTACAGATCTACTGGCTATGCAAATGCTATGTTTGATCAAGACCGCACCTGCTCGAATCTGGCTAAGATGATAATTTTGCATGACTACCCACTTCACATTGTCGAACAGCGAGGCTTCACTGCATTTATTGGGAGTTTGCAGCCTCGTTTCAGGGTGATAGATGTTGATACAATTGAAGGACAGGTGCATTCTGTTTATCAGAAAGAAAGGGAAAACCTGATGCATGTGTTCAGCACTGTGCCTGGAAGAATCAGCCTCACTGTAAGATTGTGGGCAACTAGTCAGACTCTTGGATATATTTCACTTGCAGCACAATTTATTGACACTGAATGGAGAGTGCATCGAAGAATGGTTAACTTCATGATGGTCTCTTCGCCTCATTCAGAGAATTCACTTAGTGAAGCTATCAGTACAAGCCTCTCAGACTGGAACATGAAGGACAAGCTATTCACCATCACATTGGATAATGATCCCTCGTCACATGATATCTACAGTGCAAACATGATAAACTATCTCTCCAACAAGAAGGACAACATCATGATCAAGGGCCAGTTGTTTGTTGTGAGATGTTATGCACATATACTGAACACAGTCGCACAAGATGTCATTGCTTCTGTTCATAGTGTGATCTATCATATCCGTGAAAGTATAAAGTTCATAAAAGCTTCTTCTGTCCACGAGGATAAGTTTGCGGAAATTGCTCTGCAGTTGGAGATCCCCAGTGCAAAGACCCTTTGTCTCGATGTTACAACCCAGTGGAATACAACTTATCTTATGCTTCTGGCTGCATTGGATTATCAGCAGGTATTTGCATCATTAGAGACGTGTGATGGTGACTACAATGAAGCACCATCCACAGAGGACTGGAAGAAGGTCGAGGCGGCATGCAGTTATCTTAGTCTGCTCTATGATTCTGCACACAACATCATGGCTGCACCAAATCCAACTTCAAATATCTTCTTCCATGAGGCATGGAAGCTTCAGTCAGAGCTTTCAAATGCCATTGCCCATGAAGACCCAATTTTCAGGAGCACTGCCAAAATCATGCATGAAAGGTTCGACAAGTACTGGAAGGACTGCAACCTCGTGCTAGCCATTGCTGTTGTCATGGATCCACGCTTCAAGATGAAGCTTGTTGAGTTCAGCTACTCAAAAATTCATAGTGTCGAGGCCGCGAAGTATGTCAAGGTGGTGGATGATGCTATCCATGAGCTTTACAGCGAGTATGCCACGCAGGGGGAAGCTAACAGAGATGCCCATGTAACGGACAATAGTGCTGCAGTGACTCCACCCAATGGCGATGAACTCTTAGACTTCGATATCTATCTTTCAGAAATTGCGACGAGCCAGCCCTCAATATCTGAGCTGGAGCAATACCTGGAAGAAGCCCTCATGCCCCGCATCCAAGACTTTGAAATTTTGGAGTGGTGGAAGCTTAACACCATTAAGTTCCCAACACTCTCCAAGATGGCTCGTGATGTATTGGCCATCCCCATGTCCATGGTGAGCAGTGGTAGCTCTATATTTTCGGCGACGGCAACGGGAAGCCAGATGCTTGATGACTACAGAAGCTCCCTGCGTCCTGAAACTGTGGAGTCTCTTTTCTGTGCGAAGGACTGGCTGCAGTACCCACCGGCTACCACTAAAGCTCCAAGCACAGCGTTGGTGAAGATGGAGAACTAAGTTATAACTTAGTATTAGTTAAATATTTGCATTTAGGTGGTGTTTAATTTGCATGTGGTTTTTTGGCTGTGTGAGTGGTTTAGAACATAGAATGTGACTCAGATTCCGTTCTAGCTACCCCTCAGATTACTTTGCACCATATGTTATATTACTAGATAATCTTAAGCCATGTGACTGAGAGTTCGAAGTTATAAAGGATATTAGGAGCCATCTTCAATAAAGCTAGGCAATTAGAGGTATGTGAACAGGATGGATTCACTTGATTTCGCTGGTGCTTTCTTATTGTTCTTTCACAGTATTCTTGTTATAGTGTTTGGGTTAGTTGTGCTTGTTGTTATTCATGATGTTTTTACTTCATGATGAGCCAAATTTAAGTCCACTTTGTCTCCCTTAACTAGTGGCTAAATTTGATTCGTATCCCTAAACCACGATACCGGATATCTCGACCCCTAACTATTTAAATTGGTGCAAGGTGGTTTCGCTGATGTGGCATTCTGTGACATCCAATTCATCAAATAAATTAAAAATGTGACATCCAATTCATCAAATAAATTTAAAAATAAAGTGACAGTAATGGCACCGGCAAAGGAAGGCCGTGTCAGGCACATCCGATTCATCAAATAAATTAAAAATGTGACATCCAATTCATCAAATAAATTAAAAAAATAAAGTGACAGTAGTGGCATTCTATGACATCCAAGTCATCAAATAAATTAAAAAAATAAAGTGACAATAGTGGCACCGGTAAAGGAAGGCCGCGTCAGGCGGCGGAGGGGAGCCAGGGGAGGAGGGGCCAAAGGGGAAGAGGAAGAATGACGTGTGTCTCACAAGATGACTCAGCGGGATAGACTAGGTCAAAGTGCCATGTCATCGAAACCGCCTCCAAAACTGTTAAAGGAATCAAATTACACTGGTTTTAATAGTTGGGAGGGTCAAGATATCCAGTATTGTAGTTTAGGGATATGATCATATCAATTAGATTAGGGCTATAGTTGAGGGAGTAAAGATTGACTTACTCTCCCAAGCCGCAAAGCGCGGAAAAAGTGCACCCAAGGTCCCTCAACTTGTCATCAAATTACAAAATCGTCCCCCAACCACAAAACCGGATATCCGGCGTCCCCCAACAAACCAAAACCGGTCCTAATAGGTCCCTCGGCGGTTTTAACCCCGGTTTTGTCCTATGTGGCGGCTGACTCAGCGTGGGACCCACATGGGCACCACATGTCAGGCTGCCACATCAGCACATACTCTATTTCCCCCTCTTCTCTCTCTGTGTTCTCTCCTTCCTTCCTCCCCCTCGCTCTCTGCTCTCGCACGAGCGGCAACGCGCGCGGCCGGCGACGGTGGCTCCCGAGTGGCGGCGCGCGGGCTCGCCGGCCTCCCCGTCCCCCTAGTGCGGTCGGCGATGGCGGCGTGCGGCTGCGGCCATCATGCGGAGATCGACTCGACAACGCCGCCATCAAGTCGCTGCCGTCGGGCGTCGGCGATGGCGGCGCGCAGCTGCGGCCGGCAGGGGAGGCGGAGGAGGTATGCACGGACGCCCTTGCCCTCGTCGTCGATGTCGCCACCGATGAAGAGGTCCACGCCGCTCACCAGTTCGCATGCCTCGTCGTCGTCCACGCTCGCCACTCCGGTCCGGCCGCGGCCTAG
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| CDS seq | ATGCTCCTGACCGTGGTGTTCACGGCAGCTGTGGCGTTGACTCTTGTCAACGCCGTCAACTCGCATGACTTCGCAGCACACCTCGCCGGCGTGGACTGCCGCATGGGGCTAGCTGGTCCAGTTCGATGCCTAGCCTCGGGCTTCGTGGAGCTCCTCGTGCTGGCGCTACATGTGGTTTTTGGGTTCCACCAGCTGGTCTTTCTTAGGATGTGTGAACCAAGTGGCAGTGATGATGCAATGGTGCATGCCAGTGAGATGGTTGATGGTGATGAGATGATCCACGGCAATGAGATGGTAGTTCATGACAGTGTGATGATCGATGGTAACGAGATGGTTCAAGAGAACGTCATGGTCCATGGGAGTGATCGACTCGACAACGCCGCCATCAAGTCGCTGCCGTCGGGCGTCGGCGATGGCGGCGCGCAGCTGCGGCCGGCAGGGGAGGCGGAGGAGGTATGCACGGACGCCCTTGCCCTCGTCGTCGATGTCGCCACCGATGAAGAGGTCCACGCCGCTCACCAGTTCGCATGCCTCGTCGTCGTCCACGCTCGCCACTCCGGTCCGGCCGCGGCCTAG
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| Protein seq | MLLTVVFTAAVALTLVNAVNSHDFAAHLAGVDCRMGLAGPVRCLASGFVELLVLALHVVFGFHQLVFLRMCEPSGSDDAMVHASEMVDGDEMIHGNEMVVHDSVMIDGNEMVQENVMVHGSDRLDNAAIKSLPSGVGDGGAQLRPAGEAEEVCTDALALVVDVATDEEVHAAHQFACLVVVHARHSGPAAA |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 3 [UniProtKB/Swiss-Prot:Q75HY5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_05G027750 | OsN22_05G027750_01 | Chr05 | 29978313 | 29985560 | + | NAM | ||
| CDS seq | ATGCTCCTGACCGTGGTGTTCACGGCAGCTGTGGCGTTGACTCTTGTCAACGCCGTCAACTCGCATGACTTCGCAGCACACCTCGCCGGCGTGGACTGCCGCATGGGGCTAGCTGGTCCAGTTCGATGCCTAGCCTCGGGCTTCGTGGAGCTCCTCGTGCTGGCGCTACATGTGGTTTTTGGGTTCCACCAGCTGGTCTTTCTTAGGATGTGTGAACCAAGTGGCAGTGATGATGCAATGGTGCATGCCAGTGAGATGGTTGATGGTGATGAGATGATCCACGGCAATGAGATGGTAGTTCATGACAGTGTGATGATCGATGGTAACGAGATGGTTCAAGAGAACGTCATGGTCCATGGGAGTGATCGACTCGACAACGCCGCCATCAAGTCGCTGCCGTCGGGCGTCGGCGATGGCGGCGCGCAGCTGCGGCCGGCAGGGGAGGCGGAGGAGGTATGCACGGACGCCCTTGCCCTCGTCGTCGATGTCGCCACCGATGAAGAGGTCCACGCCGCTCACCAGTTCGCATGCCTCGTCGTCGTCCACGCTCGCCACTCCGGTCCGGCCGCGGCCTAG
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| Protein seq | MLLTVVFTAAVALTLVNAVNSHDFAAHLAGVDCRMGLAGPVRCLASGFVELLVLALHVVFGFHQLVFLRMCEPSGSDDAMVHASEMVDGDEMIHGNEMVVHDSVMIDGNEMVQENVMVHGSDRLDNAAIKSLPSGVGDGGAQLRPAGEAEEVCTDALALVVDVATDEEVHAAHQFACLVVVHARHSGPAAA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0583200 | RBH | 0.412452 | 0.616397 | 0.839855 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50640 | RBH | 0.279488 | 0.412690 | 0.215210 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0583200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028490 | SBH | 1.581802 | 10.798242 | 7.246579 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028280 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028280 | SBH | 2.474766 | 12.696512 | 14.353620 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028340 | SBH | 0.475541 | 0.286392 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028230 | SBH | 1.359025 | 2.740558 | 3.289575 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0454100 | RBH | 0.236369 | 1.918577 | 0.4738225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027970 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0467000 | RBH | 0.025116 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028080 | SBH | 0.181022 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027960 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028200 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028260 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028280 | RBH | 0.0 | 0.0 | 0.0 |
