Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0028170 | OGI:05078380 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:29877282-29880686 | ||||||||
| Gene Symbol | SPS2, OsSPS2 | ||||||||||
| DNA seq | gcatgctccatatttaaatcccccacaccctccgtccctccatccggagccgccacttccttccttccaaaaaggaagaggggaaaaaaaatctatagccaccaaattgagcaagattctcacacgaaaccaatcacaagctagcattcgtttaatttcttggctgctattgtccggggaagaggttcttggtgtccaaagaatttgtcggtactagggagctccaagttgctgtagcttcatttcttggttctttgggttcttggattggcggtactgattgtgggagatgttgtctgtgagctgcccgagagtgtacatgagcaggaaggcgctggatttcggtcagctggcctcctgccggtgccgttgggctggccggtccggcatgcgggtggcgccgaggcggcgcatgccatgtgtttgtttcgtggcctcaccgagccagccaggttcttcatcctgcagctcttgttcctattggtctgttgagcagctgtgttttggagtgagctgagctaacgacttagcgtatttgcgcaggccttgctgcagttgatgtgccagcagaggcggtttctagtgcgaggacaacaacaatgatccctgagcgaatttctgtttcttcacttttggaggttgtctccgacgacctgctgaaactcaacaataatctgaaatcggtgagcttcttctgaaggccacatcttttgtttgatttactcagaattgcgttaaatagagatgcattcatgtaggctatacatttcttactcaatagtttctctttctgtgaattcgtctgatacattatcatggttgaaatgagttaagtctagTttttttttcttcgaatgcgcaagagccttgcatgccgatatattagcagaagaaaaaacttttacaactgtgacccgctgagcggtcatggggagaatcaagtctacttaagatttaagaatctaatcaggaagaagctatgatcagagttaactcatttcgattcttaaactggcagaaccagcatcttgatagctagtaaatacttggcacttgcgccttatataccaaagccgctcacagactatagttcgatcagttcagtatcatgagtaacaacttaagctactatgcttggttcatttagttgtaaggaaaatatgtcaaaactctgaaaggaaagaagtagcatcattttcgattagcacatgtacttatgaagttgactgctgaatgcacgagaatatagagaagtaccgtacagttgcctcccgtgcatcccctagaaaccatcctacagtctttatttgctggccccatgttttgatgacttggacttagcatcaccaggagtacgcggacagatttttctggctcttatttcctatatctgtaggctccataatacttttgaatggctcgcgtgttgttgaattgctagtttgctactagtcttcctactccgaccaaaatatacatattttttgtggttctgcacaacacacgattctccctcaaaaactacaacagtttcttgtttatactccatccacagatcatcgtttttttgtataattaagagagcatacttcagagcattacatattgaatacatatatcttcactaatttgcttcatatagtgtgtgagcacttgagtagagaaaaatttgctaggctagttctttgtgtttttcctacctaccaggctaccgcagcaactagctgacataattttaatagcttgttggtgcagaaaatccagttttagtttctgcggcagaacaaattttcggtgctggtggaaaaaggttaagaccagcattagtttttctggtgtccagagcaactgctgaattagctggtttgttgtaagttactcgtgttgcagctctactacttataattaggtgttttgcaattatgcactcaatccttttgttttttttgcaattcagggagcttactacagagcatcaacgcctggcagagatcatagagatgattcacacagcaagtttaatacatgatgatgtcatagatgatagtggcatgaggagaggtacatatcattctattacaaacaagtcgctgtcaataaatatcgctgtttctttccttttcattttggttcatagcctcttagaaacaatttatacatattctttatgcctggcagaatgtgtgggtttcttttgctttttgcctttttgggtggttcatgtactttggacattggtaagaaccaattgaccaatttattctgaaacgcatctgattatattcagggaaagaaactattcatcagctatatggaacacgggtggccgtacttgctggtgattttatgtttgcacaatcttcttggttcctagcgaacttagaaaacatcgaagttattaagctcatcagccaggtaatgaatgaagagcaaacttccatctcttcattaagactgtgctcctgcattgtttgcttatagatgatgtgttcacaggtgatcaaggactttgccagtggtgagataaaacaagcatctactctttttgactgcgacgtcacccttgatgattacttgctcaagagctattataaaaccgcttcgttgctcgcctcaagcacaagatctgctgcaatattcagtggtgtaagcaccactatatgcgaacaaatgtatgaatacggcaggaatctcgggctctcgttccaggtagtagatgatattcttgactttacccaatcagctgagcaacttgggaaaccagcagggagtgacttagcaaagggaaacctgacagctccagtcatattcgctttgcaagatgaacccaaactaagggagataatcgattctgagttcagtgaaagtgattcattggctactgcaatcgacttggttcacagaagtggtggaataagaagggcgcaggagcttgcaaaggagaaaggtgacttggctctccaaaatttgcagtgccttcccaagagccagttcagaagtacccttgagaacgtggtgaaatataatcttcagaggattgactgatggattcacttgattcctctgaatcacttgatttctctgaatataagatgctcgcacccatgtgggttagtagctcccaaagaagttcatcttgctagaataatgtcgatcttgggaagatgattacaagcaacaactttttgttgtggatccaccaccaacatgtatcatagcatcctattttgcagtttatgtaactacaaggcagataaaggaactaaggaagcatagtgtatatttcatagtagtttcagcttcttgatacacgaaatagtatttttttcccctcccctttctgccatttcatttgtcattggagaacgactatgaattaattaacatgattatactttatagcca
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| CDS seq | atgttgtctgtgagctgcccgagagtgtacatgagcaggaaggcgctggatttcggtcagctggcctcctgccggtgccgttgggctggccggtccggcatgcgggtggcgccgaggcggcgcatgccatgtgtttgtttcgtggcctcaccgagccagccaggccttgctgcagttgatgtgccagcagaggcggtttctagtgcgaggacaacaacaatgatccctgagcgaatttctgtttcttcacttttggaggttgtctccgacgacctgctgaaactcaacaataatctgaaatcgcttgttggtgcagaaaatccagttttagtttctgcggcagaacaaattttcggtgctggtggaaaaaggttaagaccagcattagtttttctggtgtccagagcaactgctgaattagctggtttgttggagcttactacagagcatcaacgcctggcagagatcatagagatgattcacacagcaagtttaatacatgatgatgtcatagatgatagtggcatgaggagagggaaagaaactattcatcagctatatggaacacgggtggccgtacttgctggtgattttatgtttgcacaatcttcttggttcctagcgaacttagaaaacatcgaagttattaagctcatcagccaggtgatcaaggactttgccagtggtgagataaaacaagcatctactctttttgactgcgacgtcacccttgatgattacttgctcaagagctattataaaaccgcttcgttgctcgcctcaagcacaagatctgctgcaatattcagtggtgtaagcaccactatatgcgaacaaatgtatgaatacggcaggaatctcgggctctcgttccaggtagtagatgatattcttgactttacccaatcagctgagcaacttgggaaaccagcagggagtgacttagcaaagggaaacctgacagctccagtcatattcgctttgcaagatgaacccaaactaagggagataatcgattctgagttcagtgaaagtgattcattggctactgcaatcgacttggttcacagaagtggtggaataagaagggcgcaggagcttgcaaaggagaaaggtgacttggctctccaaaatttgcagtgccttcccaagagccagttcagaagtacccttgagaacgtggtgaaatataatcttcagaggattgactga
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| Protein seq | MLSVSCPRVYMSRKALDFGQLASCRCRWAGRSGMRVAPRRRMPCVCFVASPSQPGLAAVDVPAEAVSSARTTTMIPERISVSSLLEVVSDDLLKLNNNLKSLVGAENPVLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEKGDLALQNLQCLPKSQFRSTLENVVKYNLQRID |
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| Function | Solanesyl-diphosphate synthase 2, chloroplastic [UniProtKB/Swiss-Prot:Q75HZ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0028170 | OsNaBo_05g0028170.01 | Chr05 | 29877282 | 29880686 | + | NAM | ||
| CDS seq | atgttgtctgtgagctgcccgagagtgtacatgagcaggaaggcgctggatttcggtcagctggcctcctgccggtgccgttgggctggccggtccggcatgcgggtggcgccgaggcggcgcatgccatgtgtttgtttcgtggcctcaccgagccagccaggccttgctgcagttgatgtgccagcagaggcggtttctagtgcgaggacaacaacaatgatccctgagcgaatttctgtttcttcacttttggaggttgtctccgacgacctgctgaaactcaacaataatctgaaatcgcttgttggtgcagaaaatccagttttagtttctgcggcagaacaaattttcggtgctggtggaaaaaggttaagaccagcattagtttttctggtgtccagagcaactgctgaattagctggtttgttggagcttactacagagcatcaacgcctggcagagatcatagagatgattcacacagcaagtttaatacatgatgatgtcatagatgatagtggcatgaggagagggaaagaaactattcatcagctatatggaacacgggtggccgtacttgctggtgattttatgtttgcacaatcttcttggttcctagcgaacttagaaaacatcgaagttattaagctcatcagccaggtgatcaaggactttgccagtggtgagataaaacaagcatctactctttttgactgcgacgtcacccttgatgattacttgctcaagagctattataaaaccgcttcgttgctcgcctcaagcacaagatctgctgcaatattcagtggtgtaagcaccactatatgcgaacaaatgtatgaatacggcaggaatctcgggctctcgttccaggtagtagatgatattcttgactttacccaatcagctgagcaacttgggaaaccagcagggagtgacttagcaaagggaaacctgacagctccagtcatattcgctttgcaagatgaacccaaactaagggagataatcgattctgagttcagtgaaagtgattcattggctactgcaatcgacttggttcacagaagtggtggaataagaagggcgcaggagcttgcaaaggagaaaggtgacttggctctccaaaatttgcagtgccttcccaagagccagttcagaagtacccttgagaacgtggtgaaatataatcttcagaggattgactga
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| Protein seq | MLSVSCPRVYMSRKALDFGQLASCRCRWAGRSGMRVAPRRRMPCVCFVASPSQPGLAAVDVPAEAVSSARTTTMIPERISVSSLLEVVSDDLLKLNNNLKSLVGAENPVLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEKGDLALQNLQCLPKSQFRSTLENVVKYNLQRID
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0028170 | OsNaBo_05g0028170.02 | Chr05 | 29877450 | 29880685 | + | NAM | ||
| CDS seq | atgttgtctgtgagctgcccgagagtgtacatgagcaggaaggcgctggatttcggtcagctggcctcctgccggtgccgttgggctggccggtccggcatgcgggtggcgccgaggcggcgcatgccatgtgtttgtttcgtggcctcaccgagccagccaggccttgctgcagttgatgtgccagcagaggcggtttctagtgcgaggacaacaacaatgatccctgagcgaatttctgtttcttcacttttggaggttgtctccgacgacctgctgaaactcaacaataatctgaaatcgtttctgcggcagaacaaattttcggtgctggtggaaaaagagcatcaacgcctggcagagatcatagagatgattcacacagcaagtttaatacatgatgatgtcatagatgatagtggcatgaggagagggaaagaaactattcatcagctatatggaacacgggtggccgtacttgctggtgattttatgtttgcacaatcttcttggttcctagcgaacttagaaaacatcgaagttattaagctcatcagccaggtgatcaaggactttgccagtggtgagataaaacaagcatctactctttttgactgcgacgtcacccttgatgattacttgctcaagagctattataaaaccgcttcgttgctcgcctcaagcacaagatctgctgcaatattcagtggtgtaagcaccactatatgcgaacaaatgtatgaatacggcaggaatctcgggctctcgttccaggtagtagatgatattcttgactttacccaatcagctgagcaacttgggaaaccagcagggagtgacttagcaaagggaaacctgacagctccagtcatattcgctttgcaagatgaacccaaactaagggagataatcgattctgagttcagtgaaagtgattcattggctactgcaatcgacttggttcacagaagtggtggaataagaagggcgcaggagcttgcaaaggagaaaggtgacttggctctccaaaatttgcagtgccttcccaagagccagttcagaagtacccttgagaacgtggtgaaatataatcttcagaggattgactga
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| Protein seq | MLSVSCPRVYMSRKALDFGQLASCRCRWAGRSGMRVAPRRRMPCVCFVASPSQPGLAAVDVPAEAVSSARTTTMIPERISVSSLLEVVSDDLLKLNNNLKSFLRQNKFSVLVEKEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEKGDLALQNLQCLPKSQFRSTLENVVKYNLQRID
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0028170 | OsNaBo_05g0028170.03 | Chr05 | 29877450 | 29880685 | + | NAM | ||
| CDS seq | atgttgtctgtgagctgcccgagagtgtacatgagcaggaaggcgctggatttcggtcagctggcctcctgccggtgccgttgggctggccggtccggcatgcgggtggcgccgaggcggcgcatgccatgtgtttgtttcgtggcctcaccgagccagccaggccttgctgcagttgatgtgccagcagaggcggtttctagtgcgaggacaacaacaatgatccctgagcgaatttctgtttcttcacttttggaggttgtctccgacgacctgctgaaactcaacaataatctgaaatcgcttgttggtgcagaaaatccagttttagtttctgcggcagaacaaattttcggtgctggtggaaaaaggttaagaccagcattagtttttctggtgtccagagcaactgctgaattagctggtttgttggagcttactacagagcatcaacgcctggcagagatcatagagatgattcacacagcaagtttaatacatgatgatgtcatagatgatagtggcatgaggagagggaaagaaactattcatcagctatatggaacacgggtggccgtacttgctggtgattttatgtttgcacaatcttcttggttcctagcgaacttagaaaacatcgaagttattaagctcatcagccaggtgatcaaggactttgccagtggtgagataaaacaagcatctactctttttgactgcgacgtcacccttgatgattacttgctcaagagctattataaaaccgcttcgttgctcgcctcaagcacaagatctgctgcaatattcagtggtgtaagcaccactatatgcgaacaaatgtatgaatacggcaggaatctcgggctctcgttccaggtagtagatgatattcttgactttacccaatcagctgagcaacttgggaaaccagcagggagtgacttagcaaagggaaacctgacagctccagtcatattcgctttgcaagatgaacccaaactaagggagataatcgattctgagttcagtgaaagtgattcattggctactgcaatcgacttggttcacagaagtggtggaataagaagggcgcaggagcttgcaaaggagaaaggtgacttggctctccaaaatttgcagtgccttcccaagagccagttcagaagtacccttgagaacgtggtgaaatataatcttcagaggattgactga
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| Protein seq | MLSVSCPRVYMSRKALDFGQLASCRCRWAGRSGMRVAPRRRMPCVCFVASPSQPGLAAVDVPAEAVSSARTTTMIPERISVSSLLEVVSDDLLKLNNNLKSLVGAENPVLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEKGDLALQNLQCLPKSQFRSTLENVVKYNLQRID
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr05 | 29877964 | 29879052 | + | OsNaBo_05g0028170.01,OsNaBo_05g0028170.03 | OsNaBo_05g0028170.02,OsNaBo_05g0028170.01,OsNaBo_05g0028170.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.400318 | 2.064815 | 22.894308 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0582300 | RBH | 34.465977 | 31.246561 | 16.670919 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50550 | RBH | 19.369726 | 18.112455 | 3.675889 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0582300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028440 | RBH | 0.798069 | 13.623321 | 7.341061 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028220 | RBH | 4.919778 | 2.889324 | 6.172810 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028230 | RBH | 2.136371 | 16.069746 | 15.141652 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028280 | RBH | 0.401929 | 0.346082 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028180 | RBH | 99.169792 | 17.709124 | 27.747234 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0452700 | RBH | 13.706526 | 5.4050115 | 4.896484 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027890 | RBH | 0.051963 | 0.622394 | 3.699711 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0466200 | RBH | 90.8655965 | 5.733213 | 5.208337 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028010 | RBH | 6.545329 | 0.516069 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027890 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028130 | RBH | 41.893131 | 9.998066 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028150 | RBH | 1.382551 | 0.616930 | 11.978413 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028180 | RBH | 0.720134 | 2.975547 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027670 | RBH | 0.335053 | 3.194766 | 6.448191 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008740 | RBH | 3.067634 | 2.153078 | 7.657201 |
