Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0028230 | OGI:05078380 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:29419502-29422908 | ||||||||
| Gene Symbol | SPS2, OsSPS2 | ||||||||||
| DNA seq | gcatgctccatatttaaatcccccacaccctccgtccctccatccggagccgccacttccttccttccAaaaaggaagaggggaaaaaaaatctatagccaccaaattgagcaagattctcacacgaaaccaatcacaagctagcattcgtttaatttcttggctgctattgtccggggaagaggttcttggtgtccaaagaatttgtcggttctagggagctccaagttgctgtagcttcatttcttggttctttgggttcttggattggcggtactgattgtgggagatgttgtctgtgagctgcccgagagtgtacatgagcaggaaggcgctggatttcggtcagctggcctcctgccggtgccgttgggctggccggtccggcatgcgggtggcgccgaggcggcgcatgccatgtgtttgtttcgtggcctcaccgagccagccaggttcttcatcctgcagctcttgttcctattggtctgttgagccgctgtgttttggagtgagctgagctaacgacttagcgtatttgcgcaggccttgctgcagttgatgtgccagcagaggcgatttctagtgcgagaacaacaacaatgatccctgagcgaatttctgtttcttcacttttggaggttgtctccgacgacctgctgaaactcaacaataatctgaaatcggtgagcttcttctgaaggccacatcttttgtttgatttactcagaattgcgttaaatagagatgcattcatgtaggctatacatttcttactcaatagtttctctttctgtgaattcgtctgatacattatcatggttgaaatgagttaagtctagtttttttttttcttcgaatgcgcaagagccttgcatgccgatatattagcagaagaaaaaacttttacaactgtgacccgctgagcggtcatggggagagtcaagtctacttaagatttaagaatctaatcaggaagaagctatgatcagagttaactcatttcgattcttaaactggcagaaccagcatcttgatagctagtaaatacttggcacttgcgccttatataccaaagccgctcacagactatagttcgatcagttcagtatcatgagtaacaacttaagctactatgcttggttcatttagttgtaaggaaaatatgtcaaaactctgaaaggaaagaagtagcatcattttcgattagcacatgtacttatgaagttgactgctgaatgcacgagaatatagagaagtaccgtacagttgcctcccgtgcatcccctagaaaccatcctacagtctttatttgctggccccatgttttgatgacttggacttagcatcaccaggagtacgcggacagatttttctggctcttatttcctatatctgtaggctccataatacttttgaatggctcgcgtgttgttgaattgctagtttgctactagtcttcctactccgaccaaaatatacatattttttgtggttctgcacaacacacgattctccctcaaaaactacaacagtttcttgtttgtactccatccacagatcatcatttttttgtataattaagagagcatacttcagagcattacatattgaatacatatatcttcactaatttgcttcatatagtgtgtgagcacttgagtagagaaaaatttgctaggctagttctttgtgtttttcctacctaccaggctaccgcagcaactagctgacataattttaatagcttgttggtgcagaaaatccagttttagtttctgcggcagaacaaattttcggtgctggtggaaaaaggttaagaccagcattagtttttctggtgtccagagcaactgctgaattagctggtttgttgtaagttactcgtgttgcagctctactacttataattaggtgttttgcaattatgcactcaatccttttgttttttttgcaattcagggagcttactacagagcatcaacgcctggcagagatcatagagatgattcacacagcaagtttaatacatgatgatgtcatagatgatagtggcatgaggagaggtacatatcattctattacaaacaagtcgctgtcaataaatatcgctgtttctttccttttcattttggttcatagcctcttagaaacaatttatacatattctttatgcctggcagaatgtgtgggtttcttttgctttttgcctttttgggtggttcatgtactttggacattggtaagaaccaattgaccaatttattctgaaacgcatctgattatattcagggaaagaaactattcatcagctatatggaacacgggtggccgtacttgctggtgattttatgtttgcacaatcttcttggttcctagcgaacttagaaaacatcgaagttattaagctcatcagccaggtaatgaatgaagagcaaacttccatctcttcattaagactgtgctcctgcattgtttgcttatagatgatgtgttcacaggtgatcaaggactttgccagtggtgagataaaacaagcatctactctttttgactgcgacgtcacccttgatgattacttgctcaagagctattataaaaccgcttcgttgctcgcctcaagcacaagatctgctgcaatattcagtggtgtaagcaccactatatgcgaacaaatgtatgaatacggcaggaatctcgggctctcgttccaggtagtagatgatattcttgactttacccaatcagctgagcaacttgggaaaccagcagggagtgacttagcaaagggaaacctgacagctccagtcatattcgctttgcaagatgaacccaaactaagggagataatcgattctgagttcagtgaaagtgattcattggctactgcaatcgacttggttcacagaagtggtggaataagaagggcgcaggagcttgcaaaggagaaaggtgacttggctctccaaaatttgcagtgccttcccaagagccagttcagaagtacccttgagaacgtggtgaaatataatcttcagaggattgactgatggattcacttgattcctctgaatcacttgatttctctgaatataagatgctcgcacccatgtgggttagtagctcccaaagaagttcatcttgctagaataatgtcgatcttgggaagatgattacaagcagcaactttttgttgtggatccaccaccaacatgtatcatagcatcctattttgcagtttatgtaactacaaggcagataaaggaactaaggaagcatagtgtatatttcatagtagtttcagcttcttgatacacgaaatagtatttttttcccctcccctttctgccatttcatttgtcattggagaacgactatgaattaattaacatgattatactttatagcca
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| CDS seq | atgttgtctgtgagctgcccgagagtgtacatgagcaggaaggcgctggatttcggtcagctggcctcctgccggtgccgttgggctggccggtccggcatgcgggtggcgccgaggcggcgcatgccatgtgtttgtttcgtggcctcaccgagccagccaggccttgctgcagttgatgtgccagcagaggcgatttctagtgcgagaacaacaacaatgatccctgagcgaatttctgtttcttcacttttggaggttgtctccgacgacctgctgaaactcaacaataatctgaaatcgcttgttggtgcagaaaatccagttttagtttctgcggcagaacaaattttcggtgctggtggaaaaaggttaagaccagcattagtttttctggtgtccagagcaactgctgaattagctggtttgttggagcttactacagagcatcaacgcctggcagagatcatagagatgattcacacagcaagtttaatacatgatgatgtcatagatgatagtggcatgaggagagggaaagaaactattcatcagctatatggaacacgggtggccgtacttgctggtgattttatgtttgcacaatcttcttggttcctagcgaacttagaaaacatcgaagttattaagctcatcagccaggtgatcaaggactttgccagtggtgagataaaacaagcatctactctttttgactgcgacgtcacccttgatgattacttgctcaagagctattataaaaccgcttcgttgctcgcctcaagcacaagatctgctgcaatattcagtggtgtaagcaccactatatgcgaacaaatgtatgaatacggcaggaatctcgggctctcgttccaggtagtagatgatattcttgactttacccaatcagctgagcaacttgggaaaccagcagggagtgacttagcaaagggaaacctgacagctccagtcatattcgctttgcaagatgaacccaaactaagggagataatcgattctgagttcagtgaaagtgattcattggctactgcaatcgacttggttcacagaagtggtggaataagaagggcgcaggagcttgcaaaggagaaaggtgacttggctctccaaaatttgcagtgccttcccaagagccagttcagaagtacccttgagaacgtggtgaaatataatcttcagaggattgactga
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| Protein seq | MLSVSCPRVYMSRKALDFGQLASCRCRWAGRSGMRVAPRRRMPCVCFVASPSQPGLAAVDVPAEAISSARTTTMIPERISVSSLLEVVSDDLLKLNNNLKSLVGAENPVLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEKGDLALQNLQCLPKSQFRSTLENVVKYNLQRID |
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| Function | Solanesyl-diphosphate synthase 2, chloroplastic [UniProtKB/Swiss-Prot:Q75HZ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0028230 | OsCMeo_05g0028230.01 | Chr05 | 29419502 | 29422908 | + | NAM | ||
| CDS seq | atgttgtctgtgagctgcccgagagtgtacatgagcaggaaggcgctggatttcggtcagctggcctcctgccggtgccgttgggctggccggtccggcatgcgggtggcgccgaggcggcgcatgccatgtgtttgtttcgtggcctcaccgagccagccaggccttgctgcagttgatgtgccagcagaggcgatttctagtgcgagaacaacaacaatgatccctgagcgaatttctgtttcttcacttttggaggttgtctccgacgacctgctgaaactcaacaataatctgaaatcgcttgttggtgcagaaaatccagttttagtttctgcggcagaacaaattttcggtgctggtggaaaaaggttaagaccagcattagtttttctggtgtccagagcaactgctgaattagctggtttgttggagcttactacagagcatcaacgcctggcagagatcatagagatgattcacacagcaagtttaatacatgatgatgtcatagatgatagtggcatgaggagagggaaagaaactattcatcagctatatggaacacgggtggccgtacttgctggtgattttatgtttgcacaatcttcttggttcctagcgaacttagaaaacatcgaagttattaagctcatcagccaggtgatcaaggactttgccagtggtgagataaaacaagcatctactctttttgactgcgacgtcacccttgatgattacttgctcaagagctattataaaaccgcttcgttgctcgcctcaagcacaagatctgctgcaatattcagtggtgtaagcaccactatatgcgaacaaatgtatgaatacggcaggaatctcgggctctcgttccaggtagtagatgatattcttgactttacccaatcagctgagcaacttgggaaaccagcagggagtgacttagcaaagggaaacctgacagctccagtcatattcgctttgcaagatgaacccaaactaagggagataatcgattctgagttcagtgaaagtgattcattggctactgcaatcgacttggttcacagaagtggtggaataagaagggcgcaggagcttgcaaaggagaaaggtgacttggctctccaaaatttgcagtgccttcccaagagccagttcagaagtacccttgagaacgtggtgaaatataatcttcagaggattgactga
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| Protein seq | MLSVSCPRVYMSRKALDFGQLASCRCRWAGRSGMRVAPRRRMPCVCFVASPSQPGLAAVDVPAEAISSARTTTMIPERISVSSLLEVVSDDLLKLNNNLKSLVGAENPVLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEKGDLALQNLQCLPKSQFRSTLENVVKYNLQRID
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0028230 | OsCMeo_05g0028230.02 | Chr05 | 29419623 | 29422847 | + | IsoSeq | ||
| CDS seq | atggattcacttgattcctctgaatcacttgatttctctgaatataagatgctcgcacccatgtgggttagtagctcccaaagaagttcatct |
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| Protein seq | MDSLDSSESLDFSEYKMLAPMWVSSSQRSSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr05 | 29419953 | 29420057 | + | OsCMeo_05g0028230.01 | OsCMeo_05g0028230.02,OsCMeo_05g0028230.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.136371 | 16.069746 | 15.141652 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0582300 | RBH | 34.465977 | 31.246561 | 16.670919 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50550 | RBH | 19.369726 | 18.112455 | 3.675889 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0582300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028440 | RBH | 0.798069 | 13.623321 | 7.341061 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028220 | RBH | 4.919778 | 2.889324 | 6.172810 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009120 | RBH | 1.634994 | 0.0 | 3.126757 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028280 | RBH | 0.401929 | 0.346082 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028180 | RBH | 99.169792 | 17.709124 | 27.747234 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0452700 | RBH | 13.706526 | 5.4050115 | 4.896484 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027890 | RBH | 0.051963 | 0.622394 | 3.699711 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0466200 | RBH | 90.8655965 | 5.733213 | 5.208337 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028010 | RBH | 6.545329 | 0.516069 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027890 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028130 | RBH | 41.893131 | 9.998066 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028150 | RBH | 1.382551 | 0.616930 | 11.978413 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028180 | RBH | 0.720134 | 2.975547 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027670 | RBH | 0.335053 | 3.194766 | 6.448191 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028170 | RBH | 1.400318 | 2.064815 | 22.894308 |
