Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0008740 | OGI:12026660 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:9236812-9240895 | ||||||||
| Gene Symbol | SPS3, OsSPS3 | ||||||||||
| DNA seq | cacaaatgttgtgagagcctgtcaggtgaggtgcccatacaagtacacacaacgtgttttctatatgcatgtgaaaattgtaaaactaaagaatgctaatgtcaatatacttcttttatttacaagacgtgcaaaaataaaatgctaggatacatgtaggcgcaaggtgggaggaacctggcaaggtcgctgctttccgatgattttgtcctgcatcattcatctcacataaccaaatggtctgtttcgtgagaattccacaggatcattttgtaagaaaataatgtcattttcccttattttccattggcaatccactgatccaaacagggcccaaaaccttaaaaagtttgcctttttggggagctactgtaagctcacaaaggaggttctgtatccgatcgtgaaataagtaaagctgcctaatcaatcctttctagattatatttcaccatgttctcaagagtgcttctgaactcactccttggaagacactgcagactttggatagctatttcacccttctctcttgcaagctcatgagccctctttattccaccacttctatgaactagctctattgcagtagccaaggaatttgtttcactgaactcggaatcaatgatctccctgagctgtggttcatcttgcaaagcgaaaatgaccggggctgttagattaccctttgccaggtcacttcctgcaggtttcccaagttgttcagctgattgggtgaagtcaagaatgtcatcgactacctggaaggagagaccgagattccttccgtattcatacatttgttcacatatagcagtgctgacaccactaaatatggcagctgaccttgtgcttgctgcaatcagagaagcagtcttgtagtagctcttgagcaggtaatcatcaagggtgatgtcacagtcaaaaagtgttgatgcttgttttatttcaccactggcaaaatccttgattacctgttaaagaagcacctttctggatgcaaatcatgcatagttttaaataaggcacaaaaacttgctcaaactcttcattacctgactgatgagctttataacttcaatattttcaaggtttgcaagaaaccaagaagattgtgcaaacataaaatcaccagcaagtacagccacccgtgttccatatagctgatgaatagtttccttccctaaaaataataaatgtacctcagattaaacaggtaaatttcttgagtcccctatttcacaatgacaatagaaaggagttaagtaaaatcaaacaggattgccatataaataacgaaaacaaataacaaaacagtttcgtttttttcttttagagcgaaacagaacagtttctgtaatgcaacgacagcattttttgttttcaaactagatgaatgcatggaggcaaaattcagacaatgtatttctaagaatatgcaggagagtattctaagaagaataaacggtaggcacatgtgtcacaaaaatgaaataacaaagatcggtttttgttgacagttctgttggctaagagagaatggttattactgccagtactgctggccttccataaaaacaacataatacgtacctcttcgcatcccactatcatctatgacgtcgtcatgtattaaacttgcagtgtggatcatctctatgatctctgccaaacgttggtgttctgtagttagttccctgtaatccaaaaatcaaagatcttgagggaataattttaaaagactaaagtatatgataggtgtctaaacttgtgtggtgtcacctaggtgcttgaacttgagaactgcacattcatgtcctgggatttgtataaatgggttaacaaagttccatatgccattttatggtaattagaaatgacatgtgacacccttagtccaaatcatagttttgttttccaattgaaatcaatagatattaatattttgcaattcgaaggaaaatttcacacgtcactaagatttttatttactttggtagaaattctttagtcaaacttgatttagcagggttaaagtgctgcctgaacattggtaacttattaagtttgggttggatagaagccaatttgcatttctgtaattcggtgacttaaataacacacatgttatggtttagggacctatgagatagtgcactctattccaaacctactcacatcaatgataatgcagccaaaaggaacttacaataaaccagccaattcagcagttgctctggataccagaaaaactagtgccggtcttaatctttttccaccggcaccaaatatttgttcagccgcagaaactaaaactggattttctgcaccaacaagctattaaaattatgtcagctagttattgtaacaagaacgtacataaatacaatttcctcttgaaaaaagtttaggtactagtatttgatatgtcattctgtgatgtttgatgtcttgcttaagcagacattgatgatctatagaggaaggattggaaaaatgatagtattgtgcaatgtcactactcaagagcagaaaacatgtcaaagctcagcaattatagagaagttgcataaaatagcaaacatggaagaagttattgagtgtgcaaaagcactacataagagctactataaggcatttgctcattcagtctacttctgactcccaacttcccaagcctctttggctgtgtatatcccagggtttacaatttcgatttcggtgatttcggtaggaccgaaatttaatttcgtgattttcggcactttccagaaattttgaaagattttgactggatttgaaaaaactttgaccaaattccacaaaaaattgagaaaacccgaaaatttcggtcagtatattgattgccggtggggtccgaaatttcgaaccgaattgtaaacactggtatatccatttagagatatagaggccagatttctatccattatccaaaaaaacttcccaagcctccattcctcgataactggggtcattagttagttcaaaaggaatggaccattatgcgactctgcactgtttactcgctcctgcagtatattccagtaacactgcaaatgatgggcatatttctttccctttcaaccttcgttgcacattaatttccctcgacgaacgcaaggaactaagaatacattttatttttccagaagttacaaccattaacatattgttcaaccagccaaccaaccaagtacttaaattgtccacaactttatcactaagtgcaaattttttttattctaaaatttatggactaaaactgtcacagttcgatacatttccaagcaaaatcagtgcaacttttttttttttttgtattggactatgtcgtagcaaccgtgagccttgtaccaaatgtgctaggagaaagagaagctattcaatcatacttgtatcatgaacaagctgaacagaatgatgcaaactttgggaggaaaaggtgaagctcaccgatttgaggttgttgttaagcttgagcaagtcgtccgccacaacctccagcagcgacgacaccgaaatgcgctcggcgacgccgacgccggtcgccgccgcgtcaggaatcgtcgcggccggcacgtcaacagcagcaacacctacaccaaagcacacccaactgctcagcctcacccgcccaacaccgccgccgccgagagcaaggcaaaccagcagaggagccgcagagagagaacctggcttgctgggcgagaccacggagcaaacacctggcgcgcgccgcgtcggcggcgccgcgcgtccgacccagccgcaccggagccgctgcggaggaggagggggagaaggaggagggatcgacggcgacgccgcggcggtggcgcggcgggacaggtgcgaggacgacgcgagggaggacggcgccgccatggcttcgtggccgcttgctttgcttgcttgcttgctagcttccgctcccgctccgccgtgcgtcctcttctgggatctcgtgagcgcgacgcggcgggcaacgagaggcgaggggtggtgggtgggcgtgggcgtgggcgggggtgccctggcgtgcgcgcgcggcgacggctcgtttttt
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| CDS seq | ctaactacagaacaccaacgtttggcagagatcatagagatgatccacactgcaagtttaatacatgacgacgtcatagatgatagtgggatgcgaagagggaaggaaactattcatcagctatatggaacacgggtggctgtacttgctggtgattttatgtttgcacaatcttcttggtttcttgcaaaccttgaaaatattgaagttataaagctcatcagtcaggtaatcaaggattttgccagtggtgaaataaaacaagcatcaacactttttgactgtgacatcacccttgatgattacctgctcaagagctactacaagactgcttctctgattgcagcaagcacaaggtcagctgccatatttagtggtgtcagcactgctatatgtgaacaaatgtatgaatacggaaggaatctcggtctctccttccaggtagtcgatgacattcttgacttcacccaatcagctgaacaacttgggaaacctgcaggaagtgacctggcaaagggtaatctaacagccccggtcattttcgctttgcaagatgaaccacagctcagggagatcattgattccgagttcagtgaaacaaattccttggctactgcaatagagctagttcatagaagtggtggaataaagagggctcatgagcttgcaagagagaagggtgaaatagctatccaaagtctgcagtgtcttccaaggagtgagttcagaagcactcttgagaacatggtgaaatataatctagaaaggattgattag
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| Protein seq | LTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKSYYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELAREKGEIAIQSLQCLPRSEFRSTLENMVKYNLERID |
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| Function | Probable solanesyl-diphosphate synthase 3, chloroplastic [UniProtKB/Swiss-Prot:Q0INZ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0008740 | OsNaBo_12g0008740.01 | Chr12 | 9236824 | 9240895 | - | NAM | ||
| CDS seq | ctaactacagaacaccaacgtttggcagagatcatagagatgatccacactgcaagtttaatacatgacgacgtcatagatgatagtgggatgcgaagagggaaggaaactattcatcagctatatggaacacgggtggctgtacttgctggtgattttatgtttgcacaatcttcttggtttcttgcaaaccttgaaaatattgaagttataaagctcatcagtcaggtaatcaaggattttgccagtggtgaaataaaacaagcatcaacactttttgactgtgacatcacccttgatgattacctgctcaagagctactacaagactgcttctctgattgcagcaagcacaaggtcagctgccatatttagtggtgtcagcactgctatatgtgaacaaatgtatgaatacggaaggaatctcggtctctccttccaggtagtcgatgacattcttgacttcacccaatcagctgaacaacttgggaaacctgcaggaagtgacctggcaaagggtaatctaacagccccggtcattttcgctttgcaagatgaaccacagctcagggagatcattgattccgagttcagtgaaacaaattccttggctactgcaatagagctagttcatagaagtggtggaataaagagggctcatgagcttgcaagagagaagggtgaaatagctatccaaagtctgcagtgtcttccaaggagtgagttcagaagcactcttgagaacatggtgaaatataatctagaaaggattgattag
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| Protein seq | LTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKSYYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELAREKGEIAIQSLQCLPRSEFRSTLENMVKYNLERID
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0008740 | OsNaBo_12g0008740.02 | Chr12 | 9236812 | 9237150 | - | IsoSeq | ||
| CDS seq | ttttgggccctgtttggatcagtggattgccaatggaaaataagggaaaatgacattattttcttacaaaatgatcctgtggaattctcacgaaacagaccatttggttatgtg |
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| Protein seq | FWALFGSVDCQWKIRENDIIFLQNDPVEFSRNRPFGYV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.067634 | 2.153078 | 7.657201 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0271700 | RBH | 6.088329 | 5.040770 | 0.987296 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g17320 | RBH | 2.753726 | 2.146083 | 0.208746 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0271700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009000 | RBH | 0.658524 | 0.0 | 0.912013 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009140 | RBH | 1.462235 | 0.0 | 0.902321 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009120 | RBH | 1.634994 | 0.0 | 3.126757 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008960 | RBH | 0.347237 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008770 | RBH | 25.698847 | 2.336671 | 9.426876 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0136200 | RBH | 8.5212135 | 1.245267 | 0.5919635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008800 | RBH | 1.048419 | 0.0 | 0.888524 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0151100 | RBH | 22.3879405 | 1.345838 | 2.5910705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008710 | RBH | 1.697793 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008990 | RBH | 2.161224 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008910 | RBH | 13.758841 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008890 | RBH | 1.079488 | 0.0 | 2.850571 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009020 | RBH | 0.963492 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008800 | RBH | 0.987756 | 0.0 | 0.842061 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028170 | RBH | 1.400318 | 2.064815 | 22.894308 |
