Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0020580 | OGI:05063680 | 2/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:24279761-24281494 | ||||||||
| Gene Symbol | CIPK28, OsCIPK28, OsSnRK3.18, SnRK3.18 | ||||||||||
| DNA seq | gacttgaagtcggaaaacttactgcaagatgagaatgaaaatcttaaagtatttgactttggattaagagcgttagccgaatcaaggaggcttgatggtcttctccacaccgcatgtggaactccagcttatgttgctccagaggtgctcagtaggaaaggcaacagtggctcaaaggcaaatgtgtggtcttgtggagtgattttgtttgtgcttgtggcaaattatcttcctttccatgatagaaatctcatagaaatgtgtaggaatatcacaaaggctgagtacaaatgccctcgtcatttttaggctgagctgaaggagctcctttatggaatccttgatcctgatcctagtactaggatgtctatctcaaggataaagagaagtgcttggtataggtagcccatctccatatctgcactgaacagcgaaacaggaaagaagagttgtataagtgaggctccttgcatcagttctaggagaaatcaagagccaccaaacctgcacaacttgatgcatttgaaatcatttctctctctattgggttcgatctatcaggtttatttggtgaaaggtatggctgaagagaggcaagatttacatctagaaagccagttgctactgtacttgtgaagctgaaggaactgaccaaagccttgaagctcaaagttacaaaaactgacaatggagtgcttaaattacccacgacgaaggaaggaaggaaaggcagacttgagcttgatgcagtggtttttctaaggttgctccttcttttctcttcgttgagttgaagaagaccaatggtgacacattggagtatcaaaggcaggtgaaagaggacattaggccatcactcaaggatattatttggtcatggcaaggtgatcaacagtagtcactgcatgctacatcatgcacctctatcgccaacttaccatctccacacggaaaagacaggactaattgtgaatgttttgttttttcccctccattcccatcacaaaccaagctgaaatcatggaatgtcaataaaatcgaaggcacgttttgtcctattgacatgggccatagattagagaatttatctatagttcttgcataaataagtaacatggaagcttcatcatttctgatgtttctttcttccccatcccccaagttctgagcactgcaaaatgtgtcggctagcctgttatgtaaggaaactctatcaagctgccaaatgatgaattgacagtccaatgtagtgaaggtgaagcacagaagcaatcaaggctaccaagtatcaaggttaaggtgttctgttgtgcatttaatctccctacttggtgtgaatcaagtgtgatcaagatggccaactactagtaggaagttgtactgaaaattgcggctatctcaacggaagcagcaaatatgaccaacgccaagtttgataatggcatgttggccttttctcagcagagtggttggtaacatagtaacactcttcttattccactggtagagtggctggataagattgaaactcttaaattttctgactttggattaagtgcgttagccgaatcaaggaggcaagatactcttctccacaccgcatgtggaactccagtttatgttgctctagaagtgcttagtaggaaaggctacagtggctcaaaggcagatgtgtggttttgtggagtgattctgtttgtacttgtggccaattatcttcttttccatcattga
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| CDS seq | gacttgaagtcggaaaacttactgcaagatgagaatgaaaatcttaaagtatttgactttggattaagagcgttagccgaatcaaggaggcttgatggtcttctccacaccgcatgtggaactccagcttatgttgctccagaggtgctcagtaggaaaggcaacagtggctcaaaggcaaatgagaaatcaagagccaccaaacctgcacaacttgatgcatttgaaatcatttctctctctattgggttcgatctatcaggtttatttggtgaaagagaggcaagatttacatctagaaagccagttgctactgtacttgtgaagctgaaggaactgaccaaagccttgaagctcaaagttacaaaaactgacaatggagtgcttaaattacccacgacgaaggaaggaaggaaaggcagacttgagcttgatgcagtggttgctccttcttttctcttcgttgagttgaagaagaccaatggtgacacattggagtatcaaaggcaggtgaaagaggacattaggccatcactcaaggatattatttggtcatggcaagagtggctggataagattgaaactcttaaattttctgactttggattaagtgcgttagccgaatcaaggaggcaagatactcttctccacaccgcatgtggaactccagtttatgttgctctagaagtgcttagtaggaaaggctacagtggctcaaaggcagatgtgtggttttgtggagtgattctgtttgtacttgtggccaattatcttcttttccatcattga
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| Protein seq | DLKSENLLQDENENLKVFDFGLRALAESRRLDGLLHTACGTPAYVAPEVLSRKGNSGSKANEKSRATKPAQLDAFEIISLSIGFDLSGLFGEREARFTSRKPVATVLVKLKELTKALKLKVTKTDNGVLKLPTTKEGRKGRLELDAVVAPSFLFVELKKTNGDTLEYQRQVKEDIRPSLKDIIWSWQEWLDKIETLKFSDFGLSALAESRRQDTLLHTACGTPVYVALEVLSRKGYSGSKADVWFCGVILFVLVANYLLFHH |
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| Function | CBL-interacting protein kinase 28 [UniProtKB/Swiss-Prot:A3B529] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0020580 | OsNaBo_05g0020580.01 | Chr05 | 24279761 | 24281494 | + | NAM | ||
| CDS seq | gacttgaagtcggaaaacttactgcaagatgagaatgaaaatcttaaagtatttgactttggattaagagcgttagccgaatcaaggaggcttgatggtcttctccacaccgcatgtggaactccagcttatgttgctccagaggtgctcagtaggaaaggcaacagtggctcaaaggcaaatgagaaatcaagagccaccaaacctgcacaacttgatgcatttgaaatcatttctctctctattgggttcgatctatcaggtttatttggtgaaagagaggcaagatttacatctagaaagccagttgctactgtacttgtgaagctgaaggaactgaccaaagccttgaagctcaaagttacaaaaactgacaatggagtgcttaaattacccacgacgaaggaaggaaggaaaggcagacttgagcttgatgcagtggttgctccttcttttctcttcgttgagttgaagaagaccaatggtgacacattggagtatcaaaggcaggtgaaagaggacattaggccatcactcaaggatattatttggtcatggcaagagtggctggataagattgaaactcttaaattttctgactttggattaagtgcgttagccgaatcaaggaggcaagatactcttctccacaccgcatgtggaactccagtttatgttgctctagaagtgcttagtaggaaaggctacagtggctcaaaggcagatgtgtggttttgtggagtgattctgtttgtacttgtggccaattatcttcttttccatcattga
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| Protein seq | DLKSENLLQDENENLKVFDFGLRALAESRRLDGLLHTACGTPAYVAPEVLSRKGNSGSKANEKSRATKPAQLDAFEIISLSIGFDLSGLFGEREARFTSRKPVATVLVKLKELTKALKLKVTKTDNGVLKLPTTKEGRKGRLELDAVVAPSFLFVELKKTNGDTLEYQRQVKEDIRPSLKDIIWSWQEWLDKIETLKFSDFGLSALAESRRQDTLLHTACGTPVYVALEVLSRKGYSGSKADVWFCGVILFVLVANYLLFHH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0476350 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g39870 | SBH | 0.0 | 0.0 | 0.042481 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0476350 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020780 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020730 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020610 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020610 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0020690 | SBH | 0.0 | 0.0 | 4.017854 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0362400 | SBH | 0.6549855 | 0.4232455 | 1.235926 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020290 | SBH | 0.0 | 0.083947 | 0.266856 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0371900 | SBH | 0.6641375 | 0.1742025 | 7.8798765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020560 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020510 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020590 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0020660 | SBH | 0.0 | 0.235746 | 0.449997 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0020660 | SBH | 0.0 | 0.731366 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G020140 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037800 | RBH | 0.177530 | 3.134089 | 2.950346 |
