Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_05g0476350 OGI:05063670 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr05:23430891-23432198
Gene Symbol CIPK28, OsCIPK28, OsSnRK3.18, SnRK3.18
DNA seq

CTACTGTTGATCACCTTGCCATGTCCAAATAATATCCTTGAGTGATGGCCTAATGTCCTCTTTCATCATCCTTTGATACTCCAATGTGTCACCATTAGTTTTCTTCAACTCAACTAAGAGAAAAGGAGCAACCTCAGAAACCTCTGCATCAAGCTCAAGTCTGCCCTTCCTTCCTTCCTTCGTCGTAGCCAATTTAAGCACTCCATTGTCAGTTTTTGTAACTTTGAGATTCAAGGCTTTGGCCAGTTCCTTCAGCTTCACAAGTACAGCTGCAGCTGGCTTTCTGGATGTAAACAGTGACTCTCTTCGGCCATATCTTTCACCAAATAAACCTGATAGATCGAATCCAGTAGAGAGAGAAATGATGTCAAATGCATTCAAGTTGTGTAGGTTTGGTGGCTCTTGATTTCTCTCAGAACTGATGCAGATTGTTGGGCCAGAGAAAGGAGCCTCACTTGTACAACTCTTCTTTCCTGTTTCGTTGTTCAATGCAGATATGGCGATGGGTTTCCTGTACCAAGCACTTCTCTTTATCCTTGAGATAGACATCCTAGTACTAGGATCAGGATCAAGGATTCCATAAAGGAGCTCCTTTAGCTCAGCTGAAAAATGACGAGGGCATCTATACTCAGCCTTTGCGATCTTCCTATACATTTGTATGATATTTCTATCATGGAAAGGAAGATAATTGGCCACAAGCACAAACAGAATCACTCCACAAGACCACACATCCGCCTTTGAGCCACTATAGCCTTTCCTACTAAGCACTTCTGGAGCAACATAAGCTGGAGTTCCACATGCGGTGTGGAGAAGACCATCTTGTCTCCTTGATTCAGCTAACGCACTTAATCCAAAGTCAGAGACTTTAAGGGTTTCATTCTCATCCAGTAGTAAGTTTTCCGGCTTCAAGTCACGATGATAAACACCTCGGCTATGGCAATAGTCCATTGCAGAGATCAACTGTTGAAAATAATTTCTCGCAGACTCCTCATTGAGCTTTGCTCTGGCCATTTTGTGGAAAAGCTCGCCACCCTTAGCATACTCTAAAGCAAAGTAAATATTGCTCTTGGTAGCCATTACCTCGAAGAGCTGGAGAACATTTGGATGCCTCACCAATCTCATTATCGAGATCTCCCTCTTTATCTGCTCCATGAGGCCAACCTTCAAGATCTTCTCCTTATCAATCATCTTTATCGCAACAGACTGACCAGAACTAAGATTACGAGCATAATAAACCTTTCCAAAGGTTCCTTGCCCCAATTGTCTCCCAATTACATACCGTTCCATCAACACACTCCTCTCTTCCAT

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CDS seq

ATGGAAGAGAGGAGTGTGTTGATGGAACGGTATGTAATTGGGAGACAATTGGGGCAAGGAACCTTTGGAAAGGTTTATTATGCTCGTAATCTTAGTTCTGGTCAGTCTGTTGCGATAAAGATGATTGATAAGGAGAAGATCTTGAAGGTTGGCCTCATGGAGCAGATAAAGAGGGAGATCTCGATAATGAGATTGGTGAGGCATCCAAATGTTCTCCAGCTCTTCGAGGTAATGGCTACCAAGAGCAATATTTACTTTGCTTTAGAGTATGCTAAGGGTGGCGAGCTTTTCCACAAAATGGCCAGAGCAAAGCTCAATGAGGAGTCTGCGAGAAATTATTTTCAACAGTTGATCTCTGCAATGGACTATTGCCATAGCCGAGGTGTTTATCATCGTGACTTGAAGCCGGAAAACTTACTACTGGATGAGAATGAAACCCTTAAAGTCTCTGACTTTGGATTAAGTGCGTTAGCTGAATCAAGGAGACAAGATGGTCTTCTCCACACCGCATGTGGAACTCCAGCTTATGTTGCTCCAGAAGTGCTTAGTAGGAAAGGCTATAGTGGCTCAAAGGCGGATGTGTGGTCTTGTGGAGTGATTCTGTTTGTGCTTGTGGCCAATTATCTTCCTTTCCATGATAGAAATATCATACAAATGTATAGGAAGATCGCAAAGGCTGAGTATAGATGCCCTCGTCATTTTTCAGCTGAGCTAAAGGAGCTCCTTTATGGAATCCTTGATCCTGATCCTAGTACTAGGATGTCTATCTCAAGGATAAAGAGAAGTGCTTGGTACAGGAAACCCATCGCCATATCTGCATTGAACAACGAAACAGGAAAGAAGAGTTGTACAAGTGAGGCTCCTTTCTCTGGCCCAACAATCTGCATCAGTTCTGAGAGAAATCAAGAGCCACCAAACCTACACAACTTGAATGCATTTGACATCATTTCTCTCTCTACTGGATTCGATCTATCAGGTTTATTTGGTGAAAGATATGGCCGAAGAGAGTCACTGTTTACATCCAGAAAGCCAGCTGCAGCTGTACTTGTGAAGCTGAAGGAACTGGCCAAAGCCTTGAATCTCAAAGTTACAAAAACTGACAATGGAGTGCTTAAATTGGCTACGACGAAGGAAGGAAGGAAGGGCAGACTTGAGCTTGATGCAGAGGTTTCTGAGGTTGCTCCTTTTCTCTTAGTTGAGTTGAAGAAAACTAATGGTGACACATTGGAGTATCAAAGGATGATGAAAGAGGACATTAGGCCATCACTCAAGGATATTATTTGGACATGGCAAGGTGATCAACAGTAG

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Protein seq

MEERSVLMERYVIGRQLGQGTFGKVYYARNLSSGQSVAIKMIDKEKILKVGLMEQIKREISIMRLVRHPNVLQLFEVMATKSNIYFALEYAKGGELFHKMARAKLNEESARNYFQQLISAMDYCHSRGVYHRDLKPENLLLDENETLKVSDFGLSALAESRRQDGLLHTACGTPAYVAPEVLSRKGYSGSKADVWSCGVILFVLVANYLPFHDRNIIQMYRKIAKAEYRCPRHFSAELKELLYGILDPDPSTRMSISRIKRSAWYRKPIAISALNNETGKKSCTSEAPFSGPTICISSERNQEPPNLHNLNAFDIISLSTGFDLSGLFGERYGRRESLFTSRKPAAAVLVKLKELAKALNLKVTKTDNGVLKLATTKEGRKGRLELDAEVSEVAPFLLVELKKTNGDTLEYQRMMKEDIRPSLKDIIWTWQGDQQ

Function CBL-interacting protein kinase 28 [UniProtKB/Swiss-Prot:A3B529]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_05g0476350 OsNip_05t0476350-00 Chr05 23430891 23432198 - RAP2018-11-26
CDS seq

ATGGAAGAGAGGAGTGTGTTGATGGAACGGTATGTAATTGGGAGACAATTGGGGCAAGGAACCTTTGGAAAGGTTTATTATGCTCGTAATCTTAGTTCTGGTCAGTCTGTTGCGATAAAGATGATTGATAAGGAGAAGATCTTGAAGGTTGGCCTCATGGAGCAGATAAAGAGGGAGATCTCGATAATGAGATTGGTGAGGCATCCAAATGTTCTCCAGCTCTTCGAGGTAATGGCTACCAAGAGCAATATTTACTTTGCTTTAGAGTATGCTAAGGGTGGCGAGCTTTTCCACAAAATGGCCAGAGCAAAGCTCAATGAGGAGTCTGCGAGAAATTATTTTCAACAGTTGATCTCTGCAATGGACTATTGCCATAGCCGAGGTGTTTATCATCGTGACTTGAAGCCGGAAAACTTACTACTGGATGAGAATGAAACCCTTAAAGTCTCTGACTTTGGATTAAGTGCGTTAGCTGAATCAAGGAGACAAGATGGTCTTCTCCACACCGCATGTGGAACTCCAGCTTATGTTGCTCCAGAAGTGCTTAGTAGGAAAGGCTATAGTGGCTCAAAGGCGGATGTGTGGTCTTGTGGAGTGATTCTGTTTGTGCTTGTGGCCAATTATCTTCCTTTCCATGATAGAAATATCATACAAATGTATAGGAAGATCGCAAAGGCTGAGTATAGATGCCCTCGTCATTTTTCAGCTGAGCTAAAGGAGCTCCTTTATGGAATCCTTGATCCTGATCCTAGTACTAGGATGTCTATCTCAAGGATAAAGAGAAGTGCTTGGTACAGGAAACCCATCGCCATATCTGCATTGAACAACGAAACAGGAAAGAAGAGTTGTACAAGTGAGGCTCCTTTCTCTGGCCCAACAATCTGCATCAGTTCTGAGAGAAATCAAGAGCCACCAAACCTACACAACTTGAATGCATTTGACATCATTTCTCTCTCTACTGGATTCGATCTATCAGGTTTATTTGGTGAAAGATATGGCCGAAGAGAGTCACTGTTTACATCCAGAAAGCCAGCTGCAGCTGTACTTGTGAAGCTGAAGGAACTGGCCAAAGCCTTGAATCTCAAAGTTACAAAAACTGACAATGGAGTGCTTAAATTGGCTACGACGAAGGAAGGAAGGAAGGGCAGACTTGAGCTTGATGCAGAGGTTTCTGAGGTTGCTCCTTTTCTCTTAGTTGAGTTGAAGAAAACTAATGGTGACACATTGGAGTATCAAAGGATGATGAAAGAGGACATTAGGCCATCACTCAAGGATATTATTTGGACATGGCAAGGTGATCAACAGTAG

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Protein seq

MEERSVLMERYVIGRQLGQGTFGKVYYARNLSSGQSVAIKMIDKEKILKVGLMEQIKREISIMRLVRHPNVLQLFEVMATKSNIYFALEYAKGGELFHKMARAKLNEESARNYFQQLISAMDYCHSRGVYHRDLKPENLLLDENETLKVSDFGLSALAESRRQDGLLHTACGTPAYVAPEVLSRKGYSGSKADVWSCGVILFVLVANYLPFHDRNIIQMYRKIAKAEYRCPRHFSAELKELLYGILDPDPSTRMSISRIKRSAWYRKPIAISALNNETGKKSCTSEAPFSGPTICISSERNQEPPNLHNLNAFDIISLSTGFDLSGLFGERYGRRESLFTSRKPAAAVLVKLKELAKALNLKVTKTDNGVLKLATTKEGRKGRLELDAEVSEVAPFLLVELKKTNGDTLEYQRMMKEDIRPSLKDIIWTWQGDQQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0824600 SBH 0.804605 0.855721 4.589257
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g39870 RBH 0.0 0.0 0.042481
Nipponbare | IRGSP 1.0 | RAP-db Os05g0476350 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0020750 RBH 0.102634 0.0 0.685259
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0020700 RBH 0.0 0.000000 0.994215
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0020580 RBH 0.0 1.973487 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0020580 RBH 0.0 0.063735 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0020690 RBH 0.0 0.0 4.017854
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0362400 RBH 0.6549855 0.4232455 1.235926
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0020290 RBH 0.0 0.083947 0.266856
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0371900 RBH 0.6641375 0.1742025 7.8798765
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0020530 RBH 0.0 0.085642 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0020510 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0020590 RBH 0.0 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0020660 SBH 0.0 0.235746 0.449997
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0020660 RBH 0.0 0.731366 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_05G020150 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0020570 SBH 0.0 2.537872 1.335701
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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