Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_05g0009260 | OGI:05025080 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr05:9385204-9385797 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCAATAGTGTGAGAGAGAGAGATGTGGCGTTGCTGCAGCAGCAACAGAGCCTCTGGGCTTCTCGTGTGGCTGGTGCTTGTGTGCTCATGGCAGATTGCAGCTGCTCAGCCTCAACAAGCAGCAAAAACTGATCCAACCGAAGGTAAGAACGTAACCATGTTCCCCGCAAAAAAAAAGAACGTAACCATGTTCTTGGGTTTTCTTGGCTTAATTTGTCCATGGACACTACATGATTAATTTAGAGGAATTTGTGTTGATTCATCGCCTAATTCTGCTTACACATAGTATTAATTAATGTTGACTTTGTTGAGTTAACCGTGCAGTGGCAGCCCTGAACACGATTTTGGGAAGATGGAGCAAGAAGGCATCGTCGGAGTGGAACATCAGTGGCGAGCCCTGCAGCGGTGTGGCCTCGGATCCGAGCAACTGGGATAACTTCCCCAACCatcaaccccctcatcaagtgcgcttgcacttacaacaacaacaccgtttgccacattAccaaactgtatgcacagtagcaattttgtgtctgacattttgctattgaagttaattagaacctgtacaaatcaattacaaattaaaca
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| CDS seq | ATGTGGCGTTGCTGCAGCAGCAACAGAGCCTCTGGGCTTCTCGTGTGGCTGGTGCTTGTGTGCTCATGGCAGATTGCAGCTGCTCAGCCTCAACAAGCAGCAAAAACTGATCCAACCGAAGTGGCAGCCCTGAACACGATTTTGGGAAGATGGAGCAAGAAGGCATCGTCGGAGTGGAACATCAGTGGCGAGCCCTGCAGCGGTGTGGCCTCGGATCCGAGCAACTGGGATAACTTCCCCAACCatcaaccccctcatcaagtgcgcttgcacttacaacaacaacaccgtttgccacattAccaaactgtatgcacagtagcaattttgtgtctgacattttgctattga |
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| Protein seq | MWRCCSSNRASGLLVWLVLVCSWQIAAAQPQQAAKTDPTEVAALNTILGRWSKKASSEWNISGEPCSGVASDPSNWDNFPNHQPPHQVRLHLQQQHRLPHYQTVCTVAILCLTFCY |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g56130 [UniProtKB/Swiss-Prot:C0LGH2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_05g0009260 | OsNaBo_05g0009260.01 | Chr05 | 9385204 | 9385797 | + | NAM | ||
| CDS seq | ATGTGGCGTTGCTGCAGCAGCAACAGAGCCTCTGGGCTTCTCGTGTGGCTGGTGCTTGTGTGCTCATGGCAGATTGCAGCTGCTCAGCCTCAACAAGCAGCAAAAACTGATCCAACCGAAGTGGCAGCCCTGAACACGATTTTGGGAAGATGGAGCAAGAAGGCATCGTCGGAGTGGAACATCAGTGGCGAGCCCTGCAGCGGTGTGGCCTCGGATCCGAGCAACTGGGATAACTTCCCCAACCatcaaccccctcatcaagtgcgcttgcacttacaacaacaacaccgtttgccacattAccaaactgtatgcacagtagcaattttgtgtctgacattttgctattga
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| Protein seq | MWRCCSSNRASGLLVWLVLVCSWQIAAAQPQQAAKTDPTEVAALNTILGRWSKKASSEWNISGEPCSGVASDPSNWDNFPNHQPPHQVRLHLQQQHRLPHYQTVCTVAILCLTFCY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.575359 | 37.937572 | 1.292609 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0253200 | SBH | 0.0 | 0.0 | 0.173666 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g16420 | SBH | 0.0 | 0.0 | 0.358893 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0253200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0009170 | SBH | 0.188039 | 0.814950 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0009220 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0009110 | SBH | 0.588125 | 0.0 | 0.205621 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0009200 | SBH | 0.006028 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0009250 | SBH | 0.0 | 2.592178 | 0.344113 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0140200 | SBH | 0.4547805 | 2.347724 | 0.0045095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0009120 | SBH | 0.029445 | 0.694205 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0140400 | SBH | 0.9392435 | 6.2197055 | 0.004043 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0009100 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0009050 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0009150 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0009200 | RBH | 0.059003 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0009170 | RBH | 0.051531 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G009000 | SBH | 0.868261 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0009410 | SBH | 0.0 | 60.670998 | 0.0 |
