Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0029820 | OGI:04100530 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:34064489-34068390 | ||||||||
| Gene Symbol | PSKR2, OsPSKR2, OsPSKR11, PSKR11 | ||||||||||
| DNA seq | agctggagcaaatcactgaaaacaaatgccccacaaaagttcattcataccatagcagtagctgaaattacagaacatacaataaatctgtagaaaagccggttatgtaactgctagggtgttatcctgagggtttaaacctacaatgcattttttacattgtggtgatcttgcaaccaccttatgaagaaaggaaagaggatgatatgaactattacttgaagggtggcatgagaaggaaattgaactcttggcatttcacgctatgtaaatattatttacagaactaatcatcttaagaaactatcaggatggatcttgatcgatcaaactgaaaccatttaagaacttgactgaaccttaaccttcagcgatatggtcaagccattcgactagctgctgcgatgttggtcttgacttaggagcagcagtcacacaaagcagtgctatctccaggattctgatcaactggctttcattctccttgtcatatatggttggatcaaatacttcagtttccctgtcttccttcttcatctgaagcacccaggacactacatctctgctcccttttggcctgcacatgtccacaggccgccgcccagtgagtagctccagaagaacaattccaaagctgtacacatcacccttgtaagtagccacaggtgactgcccatattcaggtggaatgtagcccaaggttcccactacatctgttgtgacatgcgtctcgtatgcgcatatgagccttgccaacccgaaatcagccaaatgagcttcaaagttctcatccaagaggatattgcttgacttgatatctcggtgcaatatatggggctcacacgacaggtgcaagtatgccagcccccttgccgatccctgtgcaatccgtagcctcttctgccaatccagcagggcaccaccatcagccctctcatgaagccagtaatccaagctgccattctccatgtatgcatagatcagtagtctgtcattgcctatcttgcaatagccttctagcagaacaaggttgtcatgctgggcacgtgatagtgtttccacttcagcttgaaactcccgctcaatctgagagtaatcgcctgaaagccgcttgattgcaactctcctcccatctggtagtgttgacttgtaaacaagtccaaaaccaccacaaccaactatataggcttgatcaaagttgttggttgacttcaatatatcttcaataccaagatccttgttgttctggaaaagcagcaccaagcttgagttcggagactctgagcagtcatcagcattcgctactgcctttggattatgctcctgcattcttgaatgaataatccttgatataaccacagaagcaatacacaagacaaaaataacccccactgcagtaccaagtccaagggccacaagggttgctttgttcttcttacgatgtggtgcttccgtatcaggagaattctttgtgctggaggaattccgaggaaagtgtagtgcgtgattgcctgcaaaatcctcactagtgaacgtggagaattggcctcctgccgggatatctccagacaaattgttgtacgaaacatcaaacttggacagaaagttcagcttcgttagagatgatggtatgctcccactgagatcattgtgggctaaatccaatatttccaagctcgacatatttgataactcatcaggaattggcccagaaaaattgttaaagctcaagtccagcacatgaagcttcactagacggccaaaggctggcaatattggcccaacaagcttgttatttgagaggatcagtgatgacgggaagctactgagttggttgtactgcaagcctttaccagtggaagtcgaattcttcttgacgaataatgggaggtctcctgttgacgcctgcccacttgagccattacttgaaattaaactcttcatctgtgtaaaggttgcaggaagctccccactgaatgagttgttggacagatcgatgtagaaaagactgtcgaggttgcctaaccatggcgggatctccccatgcaaattgttccatgaaatatccagcacactgaggctcttcaagctctgcagccaaggtggaaccgtgcccaagagtgcacagttcgccaggacaagaacctgcattctcttgaacccttcgatgccgtccattggcatggtttcaccaccacggaagttattggtgagcaccaagctagttaagttgggcaggtgctgcaagacttgcaatgctgatgacaagttggtaaaaccattccccgtaagagaaaggtatgacagtgatgtcaaattcttgaagctctccggtagctccccctgaagcttgttccttgcaaggttcagcgtcctcaactcagtgcacgaggcaaggcgaggcggtatagcaccacgcagcttgttggtcccagcatcaaagttgttcagcctcgtgagcaatctgcagtcaatggtaatctcaccggacagcgaattgttcctcaggctgaccactctaagcatcgggcagctcgacagggatagaggcaatgtgccattcaattggttggaagccaagtttaaggactccaagctcctcaatttcccaaacacatcagggatattgccattgaacatgttatatgacaagtcaatctgcgtaatctcagtgaggttaccgaggtcgtcgtcgaggctgccggagagcttattctcctgcaaacttagttttctcagcgctggcatcatgtacagatctttggggaggctcccagtaaggccattgccatcaaggaagaggtcgttgagcagcttgcactgaccaaagccggccggcacatcaccagagaaggcattcgccgagaaccgcaggaccttgaccggcgaagcgcagagcgcggtgacgttgatgccgccggagaaggcgttgccggtgatatcaagaaccgtcaggttcggcgcgccggggaacgcggggtgcggcccggtgaacccgttggaggagacgttcaccacctcgatcgccgggaagccgcccgccgggaacgcgccggcgaggccgttcgcgctgaggtcgaggcgccgcaggctcggcagccggccgagccgcgccaccgcctcgccgccgcgaagcgagttccgggagaggctccggttggagagatccagcgccaccaccctcccgagatcacaggacacgcccgtccacgagcagcaggcggcgtcgccggggccccacccgaccatcccggcggccttcgtgtccaggccatcggagaaggccaggagcgccgccaggtcggtggggtcgcacgtctggctctcggagcggccgccatggacgtggagcagaacggacaccaccaagaaatggaagaagcagtagtaacctctcatctccgccgtcgacggaatcagaaaatgaaccccttcttcctgcagggcatgaacaacttcaagaatccaggaaaacaactcacaccaccttgcaacgaggcagcatgaatctaatcaccaagaacgaacacgctcgcaagagtcaagactcctcctctgggcaagaaatccaggagcgcaagaacgggaaattccctctcattccgtccgccacatgagctggatcgcaagattgtgaggcgccgaaagaggaggatggcatcacaggaggaagaagaagaagaggaggagagtgggggaaagtcagaggagagaaagagacggttggttttgactccaatgcggctctcatcagcagccgttcttcttcctcccaacctcttcaccagatttgtttattcattcatcgcaaacttAaaaaaaatcaatttcctctctctctctctctaaagctttctcgtgtcctcttttctctcactcgcagactcgctcactggtaggcc
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| CDS seq | atgagaggttactactgcttcttccatttcttggtggtgtccgttctgctccacgtccatggcggccgctccgagagccagacgtgcgaccccaccgacctggcggcgctcctggccttctccgatggcctggacacgaaggccgccgggatggtcgggtggggccccggcgacgccgcctgctgctcgtggacgggcgtgtcctgtgatctcgggagggtggtggcgctggatctctccaaccggagcctctcccggaactcgcttcgcggcggcgaggcggtggcgcggctcggccggctgccgagcctgcggcgcctcgacctcagcgcgaacggcctcgccggcgcgttcccggcgggcggcttcccggcgatcgaggtggtgaacgtctcctccaacgggttcaccgggccgcaccccgcgttccccggcgcgccgaacctgacggttcttgatatcaccggcaacgccttctccggcggcatcaacgtcaccgcgctctgcgcttcgccggtcaaggtcctgcggttctcggcgaatgccttctctggtgatgtgccggccggctttggtcagtgcaagctgctcaacgacctcttccttgatggcaatggccttactgggagcctccccaaagatctgtacatgatgccagcgctgagaaaactaagtttgcaggagaataagctctccggcagcctcgacgacgacctcggtaacctcactgagattacgcagattgacttgtcatataacatgttcaatggcaatatccctgatgtgtttgggaaattgaggagcttggagtccttaaacttggcttccaaccaattgaatggcacattgcctctatccctgtcgagctgcccgatgcttagagtggtcagcctgaggaacaattcgctgtccggtgagattaccattgactgcagattgctcacgaggctgaacaactttgatgctgggaccaacaagctgcgtggtgctataccgcctcgccttgcctcgtgcactgagttgaggacgctgaaccttgcaaggaacaagcttcagggggagctaccggagagcttcaagaatttgacatcactgtcatacctttctcttacggggaatggttttaccaacttgtcatcagcattgcaagtcttgcagcacctgcccaacttaactagcttggtgctcaccaataacttccgtggtggtgaaaccatgccaatggacggcatcgaagggttcaagagaatgcaggttcttgtcctggcgaactgtgcactcttgggcacggttccaccttggctgcagagcttgaagagcctcagtgtgctggatatttcatggaacaatttgcatggggagatcccgccatggttaggcaacctcgacagtcttttctacatcgatctgtccaacaactcattcagtggggagcttcctgcaacctttacacagatgaagagtttaatttcaagtaatggctcaagtgggcaggcgtcaacaggagacctcccattattcgtcaagaagaattcgacttccactggtaaaggcttgcagtacaaccaactcagtagcttcccgtcatcactgatcctctcaaataacaagcttgttgggccaatattgccagcctttggccgtctagtgaagcttcataattctcctgatacggaagcaccacatcgtaagaagaacaaagcaacccttgtggcccttggacttggtactgcagtgggggttatttttgtcttgtgtattgcttctgtggttatatcaaggattattcattcaagaatgcaggagcataatccaaaggcagtagcgaatgctgatgactgctcagagtctccgaactcaagcttggtgctgcttttccagaacaacaaggatcttggtattgaagatatattgaagtcaaccaacaactttgatcaagcctatatagttggttgtggtggttttggacttgtttacaagtcaacactaccagatgggaggagagttgcaatcaagcggctttcaggcgattactctcagattgagcgggagtttcaagctgaagtggaaacactatcacgtgcccagcatgacaaccttgttctgctagaaggctattgcaagataggcaatgacagactactgatctatgcatacatggagaatggcagcttggattactggcttcatgagagggctgatggtggtgccctgctggattggcagaagaggctacggattgcacagggatcggcaagggggctggcatacttgcacctgtcgtgtgagccccatatattgcaccgagatatcaagtcaagcaatatcctcttggatgagaactttgaagctcatttggctgatttcgggttggcaaggctcatatgcgcatacgagacgcatgtcacaacagatgtagtgggaaccttgggctacattccacctgaatatgggcagtcacctgtggctacttacaagggtgatgtgtacagctttggaattgttcttctggagctactcactgggcggcggcctgtggacatgtgcaggccaaaagggagcagagatgtagtgtcctgggtgcttcagatgaagaaggaagacagggaaactgaagtatttgatccaaccatatatgacaaggagaatgaaagccagttgatcagaatcctggagatagcactgctttgtgtgactgctgctcctaagtcaagaccaacatcgcagcagctagtcgaatggcttgaccatatcgctgaaggttaa
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| Protein seq | MRGYYCFFHFLVVSVLLHVHGGRSESQTCDPTDLAALLAFSDGLDTKAAGMVGWGPGDAACCSWTGVSCDLGRVVALDLSNRSLSRNSLRGGEAVARLGRLPSLRRLDLSANGLAGAFPAGGFPAIEVVNVSSNGFTGPHPAFPGAPNLTVLDITGNAFSGGINVTALCASPVKVLRFSANAFSGDVPAGFGQCKLLNDLFLDGNGLTGSLPKDLYMMPALRKLSLQENKLSGSLDDDLGNLTEITQIDLSYNMFNGNIPDVFGKLRSLESLNLASNQLNGTLPLSLSSCPMLRVVSLRNNSLSGEITIDCRLLTRLNNFDAGTNKLRGAIPPRLASCTELRTLNLARNKLQGELPESFKNLTSLSYLSLTGNGFTNLSSALQVLQHLPNLTSLVLTNNFRGGETMPMDGIEGFKRMQVLVLANCALLGTVPPWLQSLKSLSVLDISWNNLHGEIPPWLGNLDSLFYIDLSNNSFSGELPATFTQMKSLISSNGSSGQASTGDLPLFVKKNSTSTGKGLQYNQLSSFPSSLILSNNKLVGPILPAFGRLVKLHNSPDTEAPHRKKNKATLVALGLGTAVGVIFVLCIASVVISRIIHSRMQEHNPKAVANADDCSESPNSSLVLLFQNNKDLGIEDILKSTNNFDQAYIVGCGGFGLVYKSTLPDGRRVAIKRLSGDYSQIEREFQAEVETLSRAQHDNLVLLEGYCKIGNDRLLIYAYMENGSLDYWLHERADGGALLDWQKRLRIAQGSARGLAYLHLSCEPHILHRDIKSSNILLDENFEAHLADFGLARLICAYETHVTTDVVGTLGYIPPEYGQSPVATYKGDVYSFGIVLLELLTGRRPVDMCRPKGSRDVVSWVLQMKKEDRETEVFDPTIYDKENESQLIRILEIALLCVTAAPKSRPTSQQLVEWLDHIAEG |
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| Function | Phytosulfokine receptor 1 [UniProtKB/Swiss-Prot:Q9ZVR7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0029820 | OsNaBo_04g0029820.01 | Chr04 | 34064849 | 34068390 | - | NAM | ||
| CDS seq | atgagaggttactactgcttcttccatttcttggtggtgtccgttctgctccacgtccatggcggccgctccgagagccagacgtgcgaccccaccgacctggcggcgctcctggccttctccgatggcctggacacgaaggccgccgggatggtcgggtggggccccggcgacgccgcctgctgctcgtggacgggcgtgtcctgtgatctcgggagggtggtggcgctggatctctccaaccggagcctctcccggaactcgcttcgcggcggcgaggcggtggcgcggctcggccggctgccgagcctgcggcgcctcgacctcagcgcgaacggcctcgccggcgcgttcccggcgggcggcttcccggcgatcgaggtggtgaacgtctcctccaacgggttcaccgggccgcaccccgcgttccccggcgcgccgaacctgacggttcttgatatcaccggcaacgccttctccggcggcatcaacgtcaccgcgctctgcgcttcgccggtcaaggtcctgcggttctcggcgaatgccttctctggtgatgtgccggccggctttggtcagtgcaagctgctcaacgacctcttccttgatggcaatggccttactgggagcctccccaaagatctgtacatgatgccagcgctgagaaaactaagtttgcaggagaataagctctccggcagcctcgacgacgacctcggtaacctcactgagattacgcagattgacttgtcatataacatgttcaatggcaatatccctgatgtgtttgggaaattgaggagcttggagtccttaaacttggcttccaaccaattgaatggcacattgcctctatccctgtcgagctgcccgatgcttagagtggtcagcctgaggaacaattcgctgtccggtgagattaccattgactgcagattgctcacgaggctgaacaactttgatgctgggaccaacaagctgcgtggtgctataccgcctcgccttgcctcgtgcactgagttgaggacgctgaaccttgcaaggaacaagcttcagggggagctaccggagagcttcaagaatttgacatcactgtcatacctttctcttacggggaatggttttaccaacttgtcatcagcattgcaagtcttgcagcacctgcccaacttaactagcttggtgctcaccaataacttccgtggtggtgaaaccatgccaatggacggcatcgaagggttcaagagaatgcaggttcttgtcctggcgaactgtgcactcttgggcacggttccaccttggctgcagagcttgaagagcctcagtgtgctggatatttcatggaacaatttgcatggggagatcccgccatggttaggcaacctcgacagtcttttctacatcgatctgtccaacaactcattcagtggggagcttcctgcaacctttacacagatgaagagtttaatttcaagtaatggctcaagtgggcaggcgtcaacaggagacctcccattattcgtcaagaagaattcgacttccactggtaaaggcttgcagtacaaccaactcagtagcttcccgtcatcactgatcctctcaaataacaagcttgttgggccaatattgccagcctttggccgtctagtgaagcttcataattctcctgatacggaagcaccacatcgtaagaagaacaaagcaacccttgtggcccttggacttggtactgcagtgggggttatttttgtcttgtgtattgcttctgtggttatatcaaggattattcattcaagaatgcaggagcataatccaaaggcagtagcgaatgctgatgactgctcagagtctccgaactcaagcttggtgctgcttttccagaacaacaaggatcttggtattgaagatatattgaagtcaaccaacaactttgatcaagcctatatagttggttgtggtggttttggacttgtttacaagtcaacactaccagatgggaggagagttgcaatcaagcggctttcaggcgattactctcagattgagcgggagtttcaagctgaagtggaaacactatcacgtgcccagcatgacaaccttgttctgctagaaggctattgcaagataggcaatgacagactactgatctatgcatacatggagaatggcagcttggattactggcttcatgagagggctgatggtggtgccctgctggattggcagaagaggctacggattgcacagggatcggcaagggggctggcatacttgcacctgtcgtgtgagccccatatattgcaccgagatatcaagtcaagcaatatcctcttggatgagaactttgaagctcatttggctgatttcgggttggcaaggctcatatgcgcatacgagacgcatgtcacaacagatgtagtgggaaccttgggctacattccacctgaatatgggcagtcacctgtggctacttacaagggtgatgtgtacagctttggaattgttcttctggagctactcactgggcggcggcctgtggacatgtgcaggccaaaagggagcagagatgtagtgtcctgggtgcttcagatgaagaaggaagacagggaaactgaagtatttgatccaaccatatatgacaaggagaatgaaagccagttgatcagaatcctggagatagcactgctttgtgtgactgctgctcctaagtcaagaccaacatcgcagcagctagtcgaatggcttgaccatatcgctgaaggttaa
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| Protein seq | MRGYYCFFHFLVVSVLLHVHGGRSESQTCDPTDLAALLAFSDGLDTKAAGMVGWGPGDAACCSWTGVSCDLGRVVALDLSNRSLSRNSLRGGEAVARLGRLPSLRRLDLSANGLAGAFPAGGFPAIEVVNVSSNGFTGPHPAFPGAPNLTVLDITGNAFSGGINVTALCASPVKVLRFSANAFSGDVPAGFGQCKLLNDLFLDGNGLTGSLPKDLYMMPALRKLSLQENKLSGSLDDDLGNLTEITQIDLSYNMFNGNIPDVFGKLRSLESLNLASNQLNGTLPLSLSSCPMLRVVSLRNNSLSGEITIDCRLLTRLNNFDAGTNKLRGAIPPRLASCTELRTLNLARNKLQGELPESFKNLTSLSYLSLTGNGFTNLSSALQVLQHLPNLTSLVLTNNFRGGETMPMDGIEGFKRMQVLVLANCALLGTVPPWLQSLKSLSVLDISWNNLHGEIPPWLGNLDSLFYIDLSNNSFSGELPATFTQMKSLISSNGSSGQASTGDLPLFVKKNSTSTGKGLQYNQLSSFPSSLILSNNKLVGPILPAFGRLVKLHNSPDTEAPHRKKNKATLVALGLGTAVGVIFVLCIASVVISRIIHSRMQEHNPKAVANADDCSESPNSSLVLLFQNNKDLGIEDILKSTNNFDQAYIVGCGGFGLVYKSTLPDGRRVAIKRLSGDYSQIEREFQAEVETLSRAQHDNLVLLEGYCKIGNDRLLIYAYMENGSLDYWLHERADGGALLDWQKRLRIAQGSARGLAYLHLSCEPHILHRDIKSSNILLDENFEAHLADFGLARLICAYETHVTTDVVGTLGYIPPEYGQSPVATYKGDVYSFGIVLLELLTGRRPVDMCRPKGSRDVVSWVLQMKKEDRETEVFDPTIYDKENESQLIRILEIALLCVTAAPKSRPTSQQLVEWLDHIAEG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0029820 | OsNaBo_04g0029820.02 | Chr04 | 34064489 | 34068228 | - | IsoSeq | ||
| CDS seq | atgtttcgtacaacaatttgtctggagatatcccggcaggaggccaattctccacgttcactagtgaggattttgcaggcaatcacgcactacactttcctcggaattcctccagcacaaagaattctcctgatacggaagcaccacatcgtaagaagaacaaagcaacccttgtggcccttggacttggtactgcagtgggggttatttttgtcttgtgtattgcttctgtggttatatcaaggattattcattcaagaatgcaggagcataatccaaagg
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| Protein seq | MFRTTICLEISRQEANSPRSLVRILQAITHYTFLGIPPAQRILLIRKHHIVRRTKQPLWPLDLVLQWGLFLSCVLLLWLYQGLFIQECRSIIQR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.698894 | 14.258538 | 4.033401 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0672100 | RBH | 0.556730 | 0.581728 | 2.511039 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g57630 | RBH | 0.362717 | 0.376947 | 0.633674 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0672100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0030600 | RBH | 0.0 | 8.413468 | 2.988112 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0031380 | RBH | 0.278892 | 7.036297 | 1.009024 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0030940 | RBH | 0.053663 | 5.958163 | 2.320041 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0030770 | RBH | 0.029428 | 0.260410 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0031020 | RBH | 6.225421 | 52.000969 | 13.744159 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0540800 | RBH | 3.645007 | 22.7398375 | 12.088713 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0029670 | RBH | 0.099936 | 0.584474 | 0.525234 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0546600 | RBH | 3.805562 | 16.377016 | 15.343238 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0030110 | RBH | 0.229466 | 0.470202 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0029950 | RBH | 0.508583 | 19.906691 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0030070 | RBH | 0.000000 | 19.500547 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0030620 | RBH | 0.280183 | 1.421869 | 1.161767 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0030630 | RBH | 0.188749 | 5.878284 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G030120 | RBH | 0.041765 | 3.573794 | 1.510818 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004010 | SBH | 0.630622 | 3.130005 | 0.941510 |
