Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0005590 | OGI:04033890 | 2/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:9962954-9968118 | ||||||||
| Gene Symbol | C3H27, OsC3H27, - | ||||||||||
| DNA seq | atggagcacggtctgaatagaattgttgttgaagacatgcaggtccgtatatttcttgatctgcatatacctttatgaattgtatccatgtttacaatactgtcctttttagtattccaacttccatcatatcatattgttctaagatgctgtgtgagatatatgcgatattaatatggtttgatctattgcttcacattttcagtcatgagtgccattgttgtcaaacattattgtagccttgagaggtgttcactaagtgcagttttattgctgataaattgaactgctacttaatgttcttaacatcttgtcaggaatctttgtataatactatgatttaatcctagcatgtttgcttcatctttgatgctgcgtatttttttattattattatttaactcaagttagctgaatagatttgatgtaccgtgcttatgtgttatgagtcaaggttcctgtggtcatgctctgctagagtgaattttctttcttatgtcaaaattgaggtttaatagaatgatttcttaaaattttgcagagcctgtcacagttcaatcttcccgtcacagttccaaatactcaaggactaggaatccaaaatgaaccaggaactgctcctgtcaacacatcaagccttggaggcagtaaaggtgttcctgcaaaagacatcaaatctgctgtgacaaatgatgtactgaagctaaatggaaccactgctttagctgtttctgatgctgatgtatatgatcctgatcagcctctctggaacaacgaacaccctgatgcatctgctggttttgcacatactgatggagtatggaatgctgaatccttgggctatgaagcagctcgggagcagggaaatcaggttcttgcggctgatagttcacagaactcgaaatcttctgtttgggggcgaatagcatcaaaaaaactagggcatggcaagacagctaatgctacttcaactagcgccactggaaacaaaagaaatgaaagttatgatgaaatggctcctagcactgtccatgtcaatcctgcttctgctaaagacagtaatggtcaatccaattcgagaatatttggagatgtgggccagcaaagtaaccgggcttctcataaagcatcccggacactttatgtaaatggtattcctctagaaagcaatagatgggaggcccttctttcgcacttccagaaatttgggcaggtgatagatatctatattccatctaacagtgaaaaagctttcgttcaattctctaaaagagaagaggctgaagctgcccttaaagctccagacgctgtaatgggcaaccgctttataaagctatggggccaatagagataggatcctgatgaggtagagggtaaatcccagcaaaatcttcctatttcgctgccctggccaattctgtcccacctcagccatcttcttccaaccgaggcaaggaaaatcttcaatctgcaactccaagagccagttctggatcttctgctgaagcatcaggtcctggtacaggccataaaatgcttcctgcaaatagtgtaaaatcattacctcctgacaccaaaaggcaagaaagtcttgagctcttggaagaacttcgtaaaaagcaggagatcttagctcagaagcgtgatgaattccgccggcagttagagaaactggcaaagcaagtatgtaacttttccaagtattggttgattcgatattgttaatctcattactcacattgtcagtggaacctactattcattagttagtgggcagactgactgttggtaatagactttgcaaccattgcatttttttgctattgtaatttctggaagactgactgctgatactagaTttttcttgtctattgcatttttttgctgtcgtaatttatgatttctaataactaaacaactattttgcagaagggtttagcaaattcagccaaacaggcagaagctggtggaaaagaagttgcttctaatgatgtacatagagttactgattcgaagtccatgaacaccgggacagaagggcctcgagatgctgctggtacactgcaaaacagaacttctggagagctggcttcatcttcccacaaatcatcggcaacatctgcacagaaaccagctgtagctactaagcagacaagtcctctgttagtaccatcacagaataggtttaagcttgacaatcggaccacgtcatttcgaatccttccacctttgccacctgaaatcgcagatgtaagtgtgctacccaacatccttccctgcccttcaatatccaagagaagtgataatattttgtcgtatgtgcaagtcaatattatccaaatcacaacatatattaaattatgcctcatttgtggatgaatgggacacccaccatttctgaatttccggtatccttttcatataatgaatggaagcacttaaccttagtgtgtgcttcgtcctatgttatgatttacatttctgtatcaataatggtccctctactgctaatattggaagtgttctgttccattcctggcagttcagttctcaccctttagctttgtcacctactgtattttaatttttatacccctgcactcttcaacctattgcaattggcatggtcgtctgtttatctgattaaacatagaggtcaTttcttttctcgttctttgattatggattttgcaagaatttgtctgcaagactgcaactgctaatattctgcgctacatataattatgaattcatgtacttcctccagtcacaaaaacatgtcactttttcatatatctacaacTttttgccccacagttaacatagttttcaggttttataagtatattacaataggaattagtggtcagttttcatgaccagaggaaatattattcacgtggtgaactgataagtcagtccagaaatgttatatatagtggcatgtggatccgatTAtatttaataaaattctttatttccacacagagtaagatgtcaaaagaaatttaaggtctcggtatctgtgttacttgtgtttattgtttctgttgtgttatgtgttgttctgttgatgtggttgattgaaagctgtttttttgttctgatgtcaaatactactttttacaggaatctgtcttgaaagatcacttcatgtcatttggggagctttcatctgttgttctggaagacactgaagcgtacaaccatgatgctaccttaaaaccttctctgagttgctcagcttgtgtgacatacacgacacgacaatctgctgagaaagcatttattggtggcaaatcttgtaaagggcatacactaagatttatgtggttaacagcctctcctggttcgactaaccattctagattccagaaaacctcaattcctgccagggcctctagtttctccagtcaaactcaaaacatgccatctgagtcttcaactactgtaggaaaaatgtcatccacagtcaaatccagtacaactgcaaagcctcacagtgaatccatgccgactgccacaagtgcgaagacatctgttgaaattcccaaagctttgtcttctagagattcTGAtgtttcacaatgaggtatgctgtactttatttggcaatgagttatggtttatgataatgtttgaaattggttttttgttgcttattatacatgacaagttcttgtgaaattttcctttctgtcaactcgttcatggcaaggaatattgttgagataggccatgcaagttttgaaaagtgggtcaaatggaatatataatttaaatgatgaatcctgatccaatggagaaacagtaattgtgggcttgcatgcagtaaaattcttgtttcatgtttgaatttgcataaggaaatatgagatatccggctcctgatgggaaccagctccaggcgacttttggatcgttttacaatttttttgtccttctcttaaacatgccatatggttattgtgtcattgtttggggaaaaaaataaatctaagtaggtaaggatgctatcaccaattagtttggctcggaattgtgcggtcttcacaaatcacaaggaatcttatacacatagctcttgccagtagcttacaatctgtattggctgataaatcaatatatactgattgatatgagaatcttgtcaaagtagatgtactgctgttaatacatgatgtttagcttgtccaatttccagcatctttattgggaatgtgtctatctgagtaaaatgtcacatacacttggaatagcaatttgtgttatgcatcttgtcagttgccccagttacccagtaggggtttagccctttaaggataccaatggttattaggttactacaaacaggtaacagatgggttgcattaactaattttgcacccacattagcctaatatagatgctatttagactttaggccttccgtaaattgtggagttgttctattggtgctttgtggtcattttgcattttattcttactaagcaaaatgtttctagattattgtttggttttgcttgcttttataggatacccgttttcctgatattgcatccagcctgacactgatatgagctatcaaaaatccattgcatttacttgatgttttcttatttaattgatcgtgtatagattgatatgtatccaaccacaacaaaaatccttttccctgttaaaggaaactagtagcgctaaatgggctttgttttgcaggttaaggattgaagattgggtggccatctgagccctgaggcttcaaaatttggtggcttgtcttacacaaacctgcactctttcagatcccggcgtatttaagttttggaaaatctgttgaattgattatgtttattttgtggcggcattggggcaaaacccatccaaagccaaaagggtaaagggtagtgttaggatctaaactaagcctgctggcattttggtaaatcattgtctgatcttccttgagagaatgtaattggtgttgtatactttcttgaatggaagtagcatcctgctgaaagcggttcatactatgttgttaggtctctgtattttgtagctctcccttgctgaaagcagctccatgtggattccattttgctctcactgaagcagcaaccttttttatttttaagtttctcatgtaggtttcttgtccaaag
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| CDS seq | atggagcacggtctgaatagaattgttgttgaagacatgcagagcctgtcacagttcaatcttcccgtcacagttccaaatactcaaggactaggaatccaaaatgaaccaggaactgctcctgtcaacacatcaagccttggaggcagtaaaggtgttcctgcaaaagacatcaaatctgctgtgacaaatgatgtactgaagctaaatggaaccactgctttagctgtttctgatgctgatgtatatgatcctgatcagcctctctggaacaacgaacaccctgatgcatctgctggttttgcacatactgatggagtatggaatgctgaatccttgggctatgaagcagctcgggagcagggaaatcaggttcttgcggctgatagttcacagaactcgaaatcttctgtttgggggcgaatagcatcaaaaaaactagggcatggcaagacagctaatgctacttcaactagcgccactggaaacaaaagaaatgaaagttatgatgaaatggctcctagcactgtccatgtcaatcctgcttctgctaaagacagtaatggtcaatccaattcgagaatatttggagatgtgggccagcaaagtaaccgggcttctcataaagcatcccggacactttatgtaaatggtattcctctagaaagcaatagatgggaggcccttctttcgcacttccagaaatttgggcaggtgatagatatctatattccatctaacagtgaaaaagctttcgttcaattctctaaaagagaagaggctgaagctgcccttaaagctccagacgctccatcttcttccaaccgaggcaaggaaaatcttcaatctgcaactccaagagccagttctggatcttctgctgaagcatcaggtcctggtacaggccataaaatgcttcctgcaaatagtgtaaaatcattacctcctgacaccaaaaggcaagaaagtcttgagctcttggaagaacttcgtaaaaagcaggagatcttagctcagaagcgtgatgaattccgccggcagttagagaaactggcaaagcaaaagggtttagcaaattcagccaaacaggcagaagctggtggaaaagaagttgcttctaatgatgtacatagagttactgattcgaagtccatgaacaccgggacagaagggcctcgagatgctgctggtacactgcaaaacagaacttctggagagctggcttcatcttcccacaaatcatcggcaacatctgcacagaaaccagctgtagctactaagcagacaagtcctctgttagtaccatcacagaataggtttaagcttgacaatcggaccacgtcatttcgaatccttccacctttgccacctgaaatcgcagatgaatctgtcttgaaagatcacttcatgtcatttggggagctttcatctgttgttctggaagacactgaagcgtacaaccatgatgctaccttaaaaccttctctgagttgctcagcttgtgtgacatacacgacacgacaatctgctgagaaagcatttattggtggcaaatcttgtaaagggcatacactaagatttatgtggttaacagcctctcctggttcgactaaccattctagattccagaaaacctcaattcctgccagggcctctagtttctccagtcaaactcaaaacatgccatctgagtcttcaactactgtaggaaaaatgtcatccacagtcaaatccagtacaactgcaaagcctcacagtgaatccatgccgactgccacaagtgcgaagacatctgttgaaattcccaaagctttgtcttctagagattcTGAtgtttcacaatga
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| Protein seq | MEHGLNRIVVEDMQSLSQFNLPVTVPNTQGLGIQNEPGTAPVNTSSLGGSKGVPAKDIKSAVTNDVLKLNGTTALAVSDADVYDPDQPLWNNEHPDASAGFAHTDGVWNAESLGYEAAREQGNQVLAADSSQNSKSSVWGRIASKKLGHGKTANATSTSATGNKRNESYDEMAPSTVHVNPASAKDSNGQSNSRIFGDVGQQSNRASHKASRTLYVNGIPLESNRWEALLSHFQKFGQVIDIYIPSNSEKAFVQFSKREEAEAALKAPDAPSSSNRGKENLQSATPRASSGSSAEASGPGTGHKMLPANSVKSLPPDTKRQESLELLEELRKKQEILAQKRDEFRRQLEKLAKQKGLANSAKQAEAGGKEVASNDVHRVTDSKSMNTGTEGPRDAAGTLQNRTSGELASSSHKSSATSAQKPAVATKQTSPLLVPSQNRFKLDNRTTSFRILPPLPPEIADESVLKDHFMSFGELSSVVLEDTEAYNHDATLKPSLSCSACVTYTTRQSAEKAFIGGKSCKGHTLRFMWLTASPGSTNHSRFQKTSIPARASSFSSQTQNMPSESSTTVGKMSSTVKSSTTAKPHSESMPTATSAKTSVEIPKALSSRDSDVSQ |
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| Function | Zinc finger CCCH domain-containing protein 27 [UniProtKB/Swiss-Prot:Q0JDM0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0005590 | OsNaBo_04g0005590.01 | Chr04 | 9962954 | 9968118 | + | NAM | ||
| CDS seq | atggagcacggtctgaatagaattgttgttgaagacatgcagagcctgtcacagttcaatcttcccgtcacagttccaaatactcaaggactaggaatccaaaatgaaccaggaactgctcctgtcaacacatcaagccttggaggcagtaaaggtgttcctgcaaaagacatcaaatctgctgtgacaaatgatgtactgaagctaaatggaaccactgctttagctgtttctgatgctgatgtatatgatcctgatcagcctctctggaacaacgaacaccctgatgcatctgctggttttgcacatactgatggagtatggaatgctgaatccttgggctatgaagcagctcgggagcagggaaatcaggttcttgcggctgatagttcacagaactcgaaatcttctgtttgggggcgaatagcatcaaaaaaactagggcatggcaagacagctaatgctacttcaactagcgccactggaaacaaaagaaatgaaagttatgatgaaatggctcctagcactgtccatgtcaatcctgcttctgctaaagacagtaatggtcaatccaattcgagaatatttggagatgtgggccagcaaagtaaccgggcttctcataaagcatcccggacactttatgtaaatggtattcctctagaaagcaatagatgggaggcccttctttcgcacttccagaaatttgggcaggtgatagatatctatattccatctaacagtgaaaaagctttcgttcaattctctaaaagagaagaggctgaagctgcccttaaagctccagacgctccatcttcttccaaccgaggcaaggaaaatcttcaatctgcaactccaagagccagttctggatcttctgctgaagcatcaggtcctggtacaggccataaaatgcttcctgcaaatagtgtaaaatcattacctcctgacaccaaaaggcaagaaagtcttgagctcttggaagaacttcgtaaaaagcaggagatcttagctcagaagcgtgatgaattccgccggcagttagagaaactggcaaagcaaaagggtttagcaaattcagccaaacaggcagaagctggtggaaaagaagttgcttctaatgatgtacatagagttactgattcgaagtccatgaacaccgggacagaagggcctcgagatgctgctggtacactgcaaaacagaacttctggagagctggcttcatcttcccacaaatcatcggcaacatctgcacagaaaccagctgtagctactaagcagacaagtcctctgttagtaccatcacagaataggtttaagcttgacaatcggaccacgtcatttcgaatccttccacctttgccacctgaaatcgcagatgaatctgtcttgaaagatcacttcatgtcatttggggagctttcatctgttgttctggaagacactgaagcgtacaaccatgatgctaccttaaaaccttctctgagttgctcagcttgtgtgacatacacgacacgacaatctgctgagaaagcatttattggtggcaaatcttgtaaagggcatacactaagatttatgtggttaacagcctctcctggttcgactaaccattctagattccagaaaacctcaattcctgccagggcctctagtttctccagtcaaactcaaaacatgccatctgagtcttcaactactgtaggaaaaatgtcatccacagtcaaatccagtacaactgcaaagcctcacagtgaatccatgccgactgccacaagtgcgaagacatctgttgaaattcccaaagctttgtcttctagagattcTGAtgtttcacaatga
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| Protein seq | MEHGLNRIVVEDMQSLSQFNLPVTVPNTQGLGIQNEPGTAPVNTSSLGGSKGVPAKDIKSAVTNDVLKLNGTTALAVSDADVYDPDQPLWNNEHPDASAGFAHTDGVWNAESLGYEAAREQGNQVLAADSSQNSKSSVWGRIASKKLGHGKTANATSTSATGNKRNESYDEMAPSTVHVNPASAKDSNGQSNSRIFGDVGQQSNRASHKASRTLYVNGIPLESNRWEALLSHFQKFGQVIDIYIPSNSEKAFVQFSKREEAEAALKAPDAPSSSNRGKENLQSATPRASSGSSAEASGPGTGHKMLPANSVKSLPPDTKRQESLELLEELRKKQEILAQKRDEFRRQLEKLAKQKGLANSAKQAEAGGKEVASNDVHRVTDSKSMNTGTEGPRDAAGTLQNRTSGELASSSHKSSATSAQKPAVATKQTSPLLVPSQNRFKLDNRTTSFRILPPLPPEIADESVLKDHFMSFGELSSVVLEDTEAYNHDATLKPSLSCSACVTYTTRQSAEKAFIGGKSCKGHTLRFMWLTASPGSTNHSRFQKTSIPARASSFSSQTQNMPSESSTTVGKMSSTVKSSTTAKPHSESMPTATSAKTSVEIPKALSSRDSDVSQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.595088 | 9.046099 | 3.762619 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0394300 | SBH | 3.050985 | 3.248117 | 4.320200 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32340 | SBH | 2.051706 | 2.171351 | 1.105344 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0394300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011620 | SBH | 1.240451 | 23.319078 | 6.487533 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012420 | SBH | 0.853735 | 1.391746 | 3.558527 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012110 | SBH | 1.955823 | 7.167735 | 13.608560 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011770 | SBH | 0.504617 | 0.316687 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005800 | RBH | 2.043181 | 14.429345 | 10.957281 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0154100 | SBH | 7.562012 | 21.747838 | 10.1407465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005570 | SBH | 0.018459 | 0.080097 | 0.049994 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0165600 | SBH | 8.551907 | 26.665105 | 23.140246 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0005370 | RBH | 0.179963 | 0.106345 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_Ung0001540 | SBH | 1.468976 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0005470 | SBH | 0.000000 | 16.716343 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0005290 | RBH | 0.000000 | 0.000000 | 0.406733 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005810 | SBH | 0.311114 | 4.406194 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011130 | SBH | 0.637570 | 4.976045 | 2.919816 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0005690 | SBH | 1.460114 | 0.000000 | 3.448255 |
