Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0005690 | OGI:04034160 | 10/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:10135927-10143424 | ||||||||
| Gene Symbol | C3H27, OsC3H27 | ||||||||||
| DNA seq | cgggggtgctgcgggcggttgcgtcgagccgcgatatttccccccctccgctcgccctcgactccgaCTccgactcctcgcgagttcgcccgccgccgccgatcccccatccatcccgcgaccgagcagggttgcctccaccgcgtcccggtgagcatcgcacgtcctctttttttttttgttcttcttttttgggctcgaattcgtgttaaccctagcttgcgttctagagaaatttgggttcgactgaaccccctacgcccccatgttagatccgccatggcttgccatgcccgccgcccccatgagagggaggtccgcctctgatgagcttagggttcaccgggtgccacacccgttagggccctctctgCcccccgtgtggttctagagcttatttactgtcatcgatgattgcgggaatgcctgagttagagagggttttccattccgttctgtcagtgtggtcgccttggggctaactagtttagcggtgtagaggggatgtaaaaggtccgtagtgagaggcgcatcggaacgctgtttagctgttttgatgaaacgtgttttgggtatggggggtctgatcgttggcgcactacccgtctttgtggaatatgggggcctgaaacttttagttagtttcttcggtcgggagaatgagctgttcaactgtacctgatgggcactatttaaatgcctcggagtcatgctagcatcacatagtccttttctttttacataattttgtaaaagaagaatgtttacacggggtatctgccacattggtttttgttttgctttcactgtagttgaagtcaagatggctgtcacattatatgacagttggctttttcaatgattaatgtgaatttgggctaatatgggattgtatcggattgaatcatgaatagcttattctggacaagagctccaaatattggtttgtctgttcggaaatactgtctatcttggtgattttgcttcgttaggtgacaaatagaagggcatttcttgaatgagaaactactcatatgattgatattggcatgttgctaatctagatactttacaagagatctttttaatcaaaactaggagagcttgaatatactgtctcactgtgctatttgttttggtgctgaagggtttattacaaaaaccatatacgcatcgtaatgagccttaacctaaatatcttccaccgttactctaaatatgatgcttggtttcatgaacttgcctttttttctttctcataattaaattactagttcaagtgagctttgtatactagagacttactgtgttctttcagcggtagtaatttgaaagagaaaactgcactgtgttgatgttacttttgccatttatcattctatattagtatattacaaagacatttagccctttttactctcttatggttggctttattttctgttgctcattatttattttactgccttatgtactgacaaatagggggggttgacctacattgtttggccaagacagcgagtaaaatctagatgtaaagtttgctgtgggcttgggaaacttgaagatgatcaaagaatcttcatctcctgcattggatgctgataaaatagaagttccttcaccaaaggacgaaaacaattcctcaaattctgaagctgctacagataatgaagactttgaaattagtgatgatgatgacgatgatcgtaaccacaagcaccggaagcgggaggcgagacctcaatcttttgatgagaatactgagcaatctccagggggtcctctgaaaaaaagacacaaattttctggtggagctgattcacatggggaagcacagaaagatttctttccgaaattcaagaggcgccctggagcaggggctcatagtcgggcacctcgagttaatccatcctttcgtgattcatcagcttctgtggctactcgcgctcctatgacacgtggaagaggaaggaatggtgcaccctgggctcagcatgaaccaagatttaacacacttgagatgattgactttgcatcacagatggcctctcaaggaccaccaactcatcctagcttatttatgggtcctgcattgccaagtggtagtgcacaaaatggttcttggggtccatatggatttatgcctggaatgcctaatggaatgctggatccaattcatccacttggaatgcaaggccctattcagcctgcaatatctcctttaattgatcttggcatgcctcgtcaacgttgtagagactttgaggagcgtggattttgcttgagaggggatatgtgccccatggagcacggtctgaatagaattgttgttgaagacatgcaggtccgtatatttcttgatctgcatatacctttatgaattgtatccatgtttacaatactgtcctttttagtattccaacttccatcatatcatattgttctaagatgctgtgtgagatatatgcgatattaatatggtttgatctattgcttcacattttcagtcatgagtgccattgttgtcaaacattattgtagccttgagaggtgttcactaagtgcagttttattgctgataaattgaactgctacttaatgttcttaacatcttgtcaggaatctttgtataatactatgatttaatcctagcatgtttgcttcatctttgatgctgcgtattgTtttttattattattatttaactcaagttagctgaatagatttgatgtaccgtgcttatgtgtatgagtcaaggttcctgtggtcatgctctgctagagtgaattttctttcttatgtcaaaattgaggtttaatagaatgatttcttaaaatattttgcagagcctgtcacagttcaatcttcccgtcacagttccaaatactcaaggactaggaatccaaaatgaaccaggaactgctcctgtcaacacatcaagccttggaggcagtaaaggtgttcctgcaaaagacatcaaatctgctgtgacaaatgatgtactgaagctaaatggaaccactgctttagctgtttctgatgctgatgtatatgatcctgatcagcctctctggaacaacgaacaccctgatgcatctgctggttttgcacatactgatggagtatggaatgctgaatccttgggctatgaagcagctcgggagcagggaaatcaggttcttgcggctgatagttcacagaactcgaaatcttctgtttgggggcgaatagcatcaaaaaaactagggcatggcaagacagctaatgctacttcaactagcgccactggaaacaaaagaaatgaaagttatgatgaaatggctcctagcactgtccatgtcaatcctgcttctgctaaagacagtaatggtcaatccaattcgagaatatttggagatgtgggccagcaaagtaaccgggcttctcataaagcatcccggacactttatgtaaatggtattcctctagaaagcaatagatgggaggcccttctttcgcacttccagaaatttgggcaggtgatagatatctattccatctaacagtgaaaaagctttcgttcaattctctaaaagagaagaggctgaagctgcccttaaagctccagacgctgtaatgggcaaccgctttataaagctatggtgggccaatagagataggattcctgatgaggtagagggtagaatcccagcaaaatcttcccatatgtctgctgccctggccaattctgtcccacctcagccatcttcttccaaccgaggcaaggaaaatcttcaatctgcaactccaagagccagttctggatcttctgctgaagcatcaggtcctggtacaggccataaaatgcttcctgcaaatagtgtaaaatcattacctcctgacaccaaaaggcaagaaagtcttgagctcttggaagaacttcgtaaaaagcaggagatcttagctcagaagcgtgatgaattccgccggcagttagagaaactggcaaagcaagtatgtaactttttccaagtattggttgattcgatattgttaatctcattactcacattgtcagtggaacctactattcattagttagtgggcagactgactgttggtaatagactttgcaaccattgcattttttttgctattgtaatttctggaagactgactgctgatactagatttttcttgtctattgcatttttttgctgtcgtaatttatgatttctaataactaaacaactattttggcagggtttagcaaattcagccaaacaggcagaagctggtggaaaagaagttgcttctaatgatgtacatagagttactgattcgaagtccatgaacaccgggacagaagggcctcgagatgctgctggtacactgcaaaacagaacttctggagagctggcttcatcttcccacaaatcatcggcaacatctgcacagaaaccagctgtagctactaagcagacaagtcctctgttagtaccatcacagaataggtttaagcttgacaatcggaccacgtcatttcgaatccttccacctttgccacctgaaatcgcagatgtaagtgtgctacccaacatccttccctgcccttcaatatccaagagaagataatattttgtcgtatgtgcaagtcaatattatccaaatcacaacatattaaattatgcctcatttgtggatgaatgggacacccaccatttctgaatttccggtatccttttcatataatgaatggaagcacttaaccttagtgtgtgcttcgtcctatgttatgatttacatttctgtatcaataatggtccctctactgctaatattggaagtgttctgttccattcctggcagttcagttctcaccctttagctttgtcacctactgtattttaatttttataccctgcactcttcaacctattgcaattggcatggtcgtctgtttatctgattaaacatagaggtcatttcttttctcgttctttgattatggattttgcaagaatttgtctgcaagactgcaactgctaatattctgcgctacataattatgaattcatgtacttcctccagtcacaaaaacatgtcactttttcatatctacaactttttgccccacagttaacatagttttcaggttttataagtatattacaataggaattagtggtcagttttcatgaccagaggaaatattattcacgtggtgaactgataagtcagtccagaaatgttatatatagtggcatgtggatccgattatatttaataaaattcTttTATTTCCACACAGAGTAAGATGTCAAAAGAAATTTAAGGTCTCGGTATCTGTGTTACTTGTGTTTATTGTTTCTGTTGTGTTATGTGTTGTTCTGTTGATGTGGTTGATTGAAAGCTGTTTTCTTTTGTTCTGATGTCAAATACTACTTTGTTTACAGGAATCTGTCTTGAAAGATCACTTCATGTCATTTGGGGAGCTTTCATCTGTTGTTCTGGAAGACACTGAAGCGTACAACCATGATGCTACCTTAAAACCTTCTCTGAGTTGCTCAGCTTGTGTGACATACACGACACGACAATCTGCTGAGAAAGCATTTATTGGTGGCAAATCTTGTAAAGGGCATACACTAAGATTTATGTGGTTAACAGCCTCTCCTGGTTCGACTAACCATTCTAGATTCCAGAAAACCTCAATTCCTGCCAGGGCCTCTAGTTTCTCCAGTCAAACTCAAAACATGCCATCTGAGTCTTCAACTACTGTAGGAAAAATGTCATCCACAGTCAAATCCAGTACAACTGCAAAGCCTCACAGTGAATCCATGCCGACTGCCACAAGTGCGAAGACATCTGTTGAAATTCCCAAAGCTTTGTCTTCTAGAGATTCTGATGTTTCACAATGAGGTATGCTGTACTTTATTTGGCAATGAGTTATGGTTTATGATAATGTTttgaaattggttttttgttgcttattatacatgacgagttcttgtgaaattttcctttctgtcaactcgttcatggcaaggaatattgttgagataggccatgcaagtttttgaaaagtgggtcaaatggaatatataatttaaatgatgaatcctgatccaatggagaaacagtaattgtgggcttgcatgcagtaaaattcttgtttcatgtttgaatttgcataaggaaatatgagatatccggctcctgatgggaaccagctccaggcgacttttggatcgttttacaatttttttgtccttctcttaaacatgccatatggttattgtgtgttcattgtttggggaaaaaaataaatctaagtaggtaaggatgctatcaccaattagtttggctcggaatattgtgcggtcttcacaaatcacaaggaatcttatactacaatagctcttgccagtagcttacaatctgtattggctgataaatcaatatatactgattgatatgagaatcttgtcaaagtagatgtactgctgttaatacatgatgtttagcttgtccaatttccagcatctttattgggaatgtgtctatctgagtaaaatgtcacatacacttggaatagcaatttgtgttatgcatcttgtcagttgccccagttacccagtaggggtttagccctttaaggataccaaatggttattaggttactacaaacaggtaacagatgggttgcattataactaattttgcacccacattagcctaatatagatgctatttagactttaggccttccgtaaattgtggagttgttctattggtgcttttgtggtcattttgcattttattcttactaagcaaaatgtttctagattattgtttggttttgcttgcttttataggatacccgttttcctgatattgcatccagcctgacactgatatgagctatcaaaaatccattgcatttacttgatgttttctattattataattgatcgtgtatagattgatatgtatccaaccacaacaaaaatccttttccctgttaaaggaaactagtagcgctaaatgggctttgttttgcaggttaaggattgaagattgggtggccatctgagccctgaggcttcaaaatttggtggcttgtctattacacaaacctgcacctctttcagatccccggcgtatttaagttttggaaaatactgttgaaattattgatagtttaTtttTGTGGCGGCATTGGGGCAAAACCCATCCAAAGCCAAAAGGGTAAAGGGTAGTGTTAGGATCTAAACTACGCCTGCTGGCATTTTGGTAAATCATTGTCTGATCTTCCTTGAGAGAATGTAATTGGTGTTGTATACTTTCTTGAATGGAAGTAGCATCCTGCTGAAAGCGGTTCATACTATGTTGTTAGGTCTCTGTATTTTGTAGCTCTCCCTTGCTGAAAGCAGCTCCATGTGGATTCCATTTTGCTCTCACTGAAGCAGCAACCTTTTTTATTTTTAAGTTTCTCATGTAGGTTTCTTGTCCAAAG
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| CDS seq | atgatcaaagaatcttcatctcctgcattggatgctgataaaatagaagttccttcaccaaaggacgaaaacaattcctcaaattctgaagctgctacagataatgaagactttgaaattagtgatgatgatgacgatgatcgtaaccacaagcaccggaagcgggaggcgagacctcaatcttttgatgagaatactgagcaatctccagggggtcctctgaaaaaaagacacaaattttctggtggagctgattcacatggggaagcacagaaagatttctttccgaaattcaagaggcgccctggagcaggggctcatagtcgggcacctcgagttaatccatcctttcgtgattcatcagcttctgtggctactcgcgctcctatgacacgtggaagaggaaggaatggtgcaccctgggctcagcatgaaccaagatttaacacacttgagatgattgactttgcatcacagatggcctctcaaggaccaccaactcatcctagcttatttatgggtcctgcattgccaagtggtagtgcacaaaatggttcttggggtccatatggatttatgcctggaatgcctaatggaatgctggatccaattcatccacttggaatgcaaggccctattcagcctgcaatatctcctttaattgatcttggcatgcctcgtcaacgttgtagagactttgaggagcgtggattttgcttgagaggggatatgtgccccatggagcacggtctgaatagaattgttgttgaagacatgcagagcctgtcacagttcaatcttcccgtcacagttccaaatactcaaggactaggaatccaaaatgaaccaggaactgctcctgtcaacacatcaagccttggaggcagtaaaggtgttcctgcaaaagacatcaaatctgctgtgacaaatgatgtactgaagctaaatggaaccactgctttagctgtttctgatgctgatgtatatgatcctgatcagcctctctggaacaacgaacaccctgatgcatctgctggttttgcacatactgatggagtatggaatgctgaatccttgggctatgaagcagctcgggagcagggaaatcaggttcttgcggctgatagttcacagaactcgaaatcttctgtttgggggcgaatagcatcaaaaaaactagggcatggcaagacagctaatgctacttcaactagcgccactggaaacaaaagaaatgaaagttatgatgaaatggctcctagcactgtccatgtcaatcctgcttctgctaaagacagtaatggtcaatccaattcgagaatatttggagatgtgggccagcaaagtaaccgggcttctcataaagcatcccggacactttatgtaaatggtattcctctagaaagcaatagatgggaggcccttctttcgcacttccagaaatttgggcaggtgatagatatctattccatctaa
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| Protein seq | MIKESSSPALDADKIEVPSPKDENNSSNSEAATDNEDFEISDDDDDDRNHKHRKREARPQSFDENTEQSPGGPLKKRHKFSGGADSHGEAQKDFFPKFKRRPGAGAHSRAPRVNPSFRDSSASVATRAPMTRGRGRNGAPWAQHEPRFNTLEMIDFASQMASQGPPTHPSLFMGPALPSGSAQNGSWGPYGFMPGMPNGMLDPIHPLGMQGPIQPAISPLIDLGMPRQRCRDFEERGFCLRGDMCPMEHGLNRIVVEDMQSLSQFNLPVTVPNTQGLGIQNEPGTAPVNTSSLGGSKGVPAKDIKSAVTNDVLKLNGTTALAVSDADVYDPDQPLWNNEHPDASAGFAHTDGVWNAESLGYEAAREQGNQVLAADSSQNSKSSVWGRIASKKLGHGKTANATSTSATGNKRNESYDEMAPSTVHVNPASAKDSNGQSNSRIFGDVGQQSNRASHKASRTLYVNGIPLESNRWEALLSHFQKFGQVIDIYSI |
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| Function | Zinc finger CCCH domain-containing protein 27 [UniProtKB/Swiss-Prot:Q0JDM0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0005690 | OsNaBo_04g0005690.01 | Chr04 | 10135927 | 10143424 | + | NAM | ||
| CDS seq | atgatcaaagaatcttcatctcctgcattggatgctgataaaatagaagttccttcaccaaaggacgaaaacaattcctcaaattctgaagctgctacagataatgaagactttgaaattagtgatgatgatgacgatgatcgtaaccacaagcaccggaagcgggaggcgagacctcaatcttttgatgagaatactgagcaatctccagggggtcctctgaaaaaaagacacaaattttctggtggagctgattcacatggggaagcacagaaagatttctttccgaaattcaagaggcgccctggagcaggggctcatagtcgggcacctcgagttaatccatcctttcgtgattcatcagcttctgtggctactcgcgctcctatgacacgtggaagaggaaggaatggtgcaccctgggctcagcatgaaccaagatttaacacacttgagatgattgactttgcatcacagatggcctctcaaggaccaccaactcatcctagcttatttatgggtcctgcattgccaagtggtagtgcacaaaatggttcttggggtccatatggatttatgcctggaatgcctaatggaatgctggatccaattcatccacttggaatgcaaggccctattcagcctgcaatatctcctttaattgatcttggcatgcctcgtcaacgttgtagagactttgaggagcgtggattttgcttgagaggggatatgtgccccatggagcacggtctgaatagaattgttgttgaagacatgcagagcctgtcacagttcaatcttcccgtcacagttccaaatactcaaggactaggaatccaaaatgaaccaggaactgctcctgtcaacacatcaagccttggaggcagtaaaggtgttcctgcaaaagacatcaaatctgctgtgacaaatgatgtactgaagctaaatggaaccactgctttagctgtttctgatgctgatgtatatgatcctgatcagcctctctggaacaacgaacaccctgatgcatctgctggttttgcacatactgatggagtatggaatgctgaatccttgggctatgaagcagctcgggagcagggaaatcaggttcttgcggctgatagttcacagaactcgaaatcttctgtttgggggcgaatagcatcaaaaaaactagggcatggcaagacagctaatgctacttcaactagcgccactggaaacaaaagaaatgaaagttatgatgaaatggctcctagcactgtccatgtcaatcctgcttctgctaaagacagtaatggtcaatccaattcgagaatatttggagatgtgggccagcaaagtaaccgggcttctcataaagcatcccggacactttatgtaaatggtattcctctagaaagcaatagatgggaggcccttctttcgcacttccagaaatttgggcaggtgatagatatctattccatctaa
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| Protein seq | MIKESSSPALDADKIEVPSPKDENNSSNSEAATDNEDFEISDDDDDDRNHKHRKREARPQSFDENTEQSPGGPLKKRHKFSGGADSHGEAQKDFFPKFKRRPGAGAHSRAPRVNPSFRDSSASVATRAPMTRGRGRNGAPWAQHEPRFNTLEMIDFASQMASQGPPTHPSLFMGPALPSGSAQNGSWGPYGFMPGMPNGMLDPIHPLGMQGPIQPAISPLIDLGMPRQRCRDFEERGFCLRGDMCPMEHGLNRIVVEDMQSLSQFNLPVTVPNTQGLGIQNEPGTAPVNTSSLGGSKGVPAKDIKSAVTNDVLKLNGTTALAVSDADVYDPDQPLWNNEHPDASAGFAHTDGVWNAESLGYEAAREQGNQVLAADSSQNSKSSVWGRIASKKLGHGKTANATSTSATGNKRNESYDEMAPSTVHVNPASAKDSNGQSNSRIFGDVGQQSNRASHKASRTLYVNGIPLESNRWEALLSHFQKFGQVIDIYSI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.460114 | 0.000000 | 3.448255 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0394300 | SBH | 3.050985 | 3.248117 | 4.320200 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32340 | SBH | 2.051706 | 2.171351 | 1.105344 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0394300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011620 | SBH | 1.240451 | 23.319078 | 6.487533 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012420 | SBH | 0.853735 | 1.391746 | 3.558527 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012110 | SBH | 1.955823 | 7.167735 | 13.608560 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011770 | SBH | 0.504617 | 0.316687 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005620 | SBH | 1.252924 | 4.057422 | 1.460893 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0156100 | RBH | 7.3445935 | 20.223367 | 9.9868045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005610 | RBH | 0.000000 | 0.417545 | 1.650351 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0165600 | RBH | 8.551907 | 26.665105 | 23.140246 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0005520 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_Ung0001540 | SBH | 1.468976 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0005470 | RBH | 0.000000 | 16.716343 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0005330 | RBH | 0.087753 | 0.283139 | 0.019043 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005810 | RBH | 0.311114 | 4.406194 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011130 | RBH | 0.637570 | 4.976045 | 2.919816 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0005460 | RBH | 2.225481 | 20.759108 | 8.465190 |
