Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0394300 | OGI:04061520 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:19383372-19391614 | ||||||||
| Gene Symbol | C3H27, OsC3H27 | ||||||||||
| DNA seq | AGTGATACGTGCTCCCTCCTTCCCTAAATGTTTGATAGCGTTGACTTTTTTAAACATGTTTGACCGTTCATTTTATTCAAAAACTTTTGTGATATGTGTAAAATTATATGTATACATAAAAGTATATTTAACAATAAATCAAATGATAGAAAAAGAATTAACAATTACTTAAATTTTTTGAATAAGACGAACGGTCAAACAATTTTAAAAAAATCAACGGCGTCAGACATTTTAAGATGGAGGTAGTATTTGGTTAGAGAAGTTGCATTGAAAAGGGGTGCAGTCATGTACGTGAACATGTCATGTTTTCCTATCAATTGAAACTTTGGACAAGAAACCTACATGAGAAACTTAAAAATAAAAAAGGTTGCTGCTTCAGTGAGAGCAAAATGGAATCCACATGGAGCTGCTTTCAGCAAGGGAGAGCTACAAAATACAGAGACCTAACAACATAGTATGAACCGCTTTCAGCAGGATGCTACTTCCATTCAAGAAAGTATACAACACCAATTACATTCTCTCAAGGAAGATCAGACAATGATTTACCAAAATGCCAGCAGGCGTAGTTTAGATCCTAACACTACCCTTTACCCTTTTGGCTTTGGATGGGTTTTGCCCCAATGCCGCCACAAAATAAACTATCAATAATTTCAACAGTATTTTCCAAAACTTAAATACGCCGGGGATCTGAAAGAGGTGCAGGTTTGTGTAATAGACAAGCCACCAAATTTTGAAGCCTCAGGGCTCAGATGGCCACCCAATCTTCAATCCTTAACCTGCAAAACAAAGCCCATTTAGCGCTACTAGTTTCCTTTAACAGGGAAAAGGATTTTTGTTGTGGTTGGATACATATCAATCTATACACGATCAATTATAATAATAGAAAACATCAAGTAAATGCAATGGATTTTTGATAGCTCATATCAGTGTCAGGCTGGATGCAATATCAGGAAAACGGGTATCCTATAAAAGCAAGCAAAACCAAACAATAATCTAGAAACATTTTGCTTAGTAAGAATAAAATGCAAAATGACCACAAAAGCACCAATAGAACAACTCCACAATTTACGGAAGGCCTAAAGTCTAAATAGCATCTATATTAGGCTAATGTGGGTGCAAAATTAGTTATAATGCAACCCATCTGTTACCTGTTTGTAGTAACCTAATAACCATTTGGTATCCTTAAAGGGCTAAACCCCTACTGGGTAACTGGGGCAACTGACAAGATGCATAACACAAATTGCTATTCCAAGTGTATGTGACATTTTACTCAGATAGACACATTCCCAATAAAGATGCTGGAAATTGGACAAGCTAAACATCATGTATTAACAGCAGTACATCCACTTTGACAAGATTCTCATATCAATCAGTATATATTGATTTATCAGCCAATACAGATTGTAAGCTACTGGCAAGAGCTATTGTAGTATAAGATTCCTTGTGATTTGTGAAGACCGCACAATATTCCGAGCCAAACTAATTGGTGATAGCATCCTTACCTACTTAGATTTATTTTTTTCCCCAAACAATGAACACACAATAACCATATGGCATGTTTAAGAGAAGGACAAAAAATTTGTAAAACGATCCAAAAGTCGCCTGGAGCTGGTTCCCATCAGGAGCCGGATATCTCATATTTCCTTATGCAAATTCAAACATGAAACAAGAATTTTACTGCATGCAAGCCCACAATTACTGTTTCTCCATTGGATCAGGATTCATCATTTAAATTATATATTCCATTTGACCCACTTTTCAAAAACTTGCATGGCCTATCTCAACAATATTCCTTGCCATGAACGAGTTGACAGAAAGGAAAATTTCACAAGAACTTGTCATGTATAATAAGCAACAAAAAACCAATTTCAAACATTATCATAAACCATAACTCATTGCCAAATAAAGTACAGCATACCTCATTGTGAAACATCAGAATCTCTAGAAGACAAAGCTTTGGGAATTTCAACAGATGTCTTCGCACTTGTGGCAGTCGGCATGGATTCACTGTGAGGCTTTGCAGTTGTACTGGATTTGACTGTGGATGACATTTTTCCTACAGTAGTTGAAGACTCAGATGGCATGTTTTGAGTTTGACTGGAGAAACTAGAGGCCCTGGCAGGAATTGAGGTTTTCTGGAATCTAGAATGGTTAGTCGAACCAGGAGAGGCTGTTAACCACATAAATCTTAGTGTATGCCCTTTACAAGATTTGCCACCAATAAATGCTTTCTCAGCAGATTGTCGTGTCGTGTATGTCACACAAGCTGAGCAACTCAGAGAAGGTTTTAAGGTAGCATCATGGTTGTACGCTTCAGTGTCTTCCAGAACAACAGATGAAAGCTCCCCAAATGACATGAAGTGATCTTTCAAGACAGATTCCTGTAAACAAAGTAGTATTTGACATCAGAACAAAAGAAAACAGCTTTCAATCAACCACATCAACAGAACAACACATAACACAACAGAAACAATAAACACAAGTAACACAGATACCGAGACCTTAAATTTCTTTTGACATCTTACTCTGTGTGGAAATAAAGAATTTTAGGGCCCCTTTGAATCGCAGGATTGAGAAAACGTAGGAATAGGAAAAACGTAGGATTTTGATAGGAATGTAAGTGTAAAACAAAGGATTGCAAAACACAGGAAAAATACAGGAATGACCGTTTGATTGAACCACAGGAAAAACACAGGAATTGGATGAGAGAGATAGACTCAAAGGAAAGTTAGCAAGAGGTTGAAGCTCTTGCTAAATTTCCTCCAAAATCTCTATAGGATTGTCCATTCCATAGGAATTTCAAAGGATTGGATAGGATTCAATCCTTTGTTTCAAAGGGCTTCATAGGAAATTTTCCTATAGGATTGAAAACCTCTAAAATTCCTATGTTTTTCCTCCAAATCAAAGGGGCCCTTAAATATAATCGGATCCACATGCCACTATATATAACATTTCTGGACTGACTTATCAGTTCACCACGTGAATAATATTTCCTCTGGTCATGAAAACTGACCACTAATTCCTATTGTAATATACTTATAAAACCTGAAAACTATGTTAACTGTGGGGCAAAAAGTTGTAGATATATGAAAAAGTGACATGTTTTTGTGACTGGAGGAAGTACATGAATTCATAATTATATGTAGCGCAGAATATTAGCAGTTGCAGTCTTGCAGACAAATTCTTGCAAAATCCATAATCAAAGAACGAGAAAAGAAATGACCTCTATGTTTAATCAGATAAACAGACGACCATGCCAATTGCAATAGGTTGAAGAGTGCAGGGGTATAAAAATTAAAATACAGTAGGTGACAAAGCTAAAGGGTGAGAACTGAACTGCCAGGAATGGAACAGAACACTTCCAATATTAGCAGTAGAGGGACCATTATTGATACAGAAATGTAAATCATAACATAGGACGAAGCACACACTAAGGTTAAGTGCTGCCATTCATTATATGAAAAGGATACCGGAAATTCAGAAATGGTGGGTGTCCCATTCATCCACAAATGAGGCATAATTTAATATATGTTGTGATTTGGATAATATTGACTTGCACATACGACAAAATATTATCACTTCTCTTGGATATTGAAGGGCAGGGAAGGATGTTGGGTAGCACACTTACATCTGCGATTTCAGGTGGCAAAGGTGGAAGGATTCGAAATGACGTGGTCCGATTGTCAAGCTTAAACCTATTCTGTGATGGTACTAACAGAGGACTTGTCTGCTTAGTAGCTACAGCTGGTTTCTGTGCAGATGTTGCCGATGATTTGTGGGAAGATGAAGCCAGCTCTCCAGAAGTTCTGTTTTGCAGTGTACCAGCAGCATCTCGAGGCCCTTCTGTCCCGGTGTTCATGGACTTCGAATCAGTAACTCTATGTACATCATTAGAAGCAACTTCTTTTCCACCAGCTTCTGCCTGTTTGGCTGAATTTGCTAAACCCTTCTGCAAAATAGTTGTTTAGTTATTAGAAATCATAAATTACGACAGCAAAAAAATGCAATAGACAAGAAAAATCTAGTATCAGCAGTCAGTCTTCCAGAAATTACAATAGCAAAAAAAATGCAATGGTTGCAAAGTCTATTACCAACAGTCAGTCTGCCCACTAACTAATGAATAGTAGGTTCCACTGACAATGTGAGTAATGAGATTAACAATATCGAATCAACCAATACTTGGAAAAAGTTACATACTTGCTTTGCCAGTTTCTCTAACTGCCGGCGGAATTCATCACGCTTCTGAGCTAAGATCTCCTGCTTTTTACGAAGTTCTTCCAAGAGCTCAAGACTTTCTTGCCTTTTGGTGTCAGGAGGTAATGATTTTACACTATTTGCAGGAAGCATTTTATGGCCTGTACCAGGACCTGATGCTTCAGCAGAAGATCCAGAACTGGCTCTTGGAGTTGCAGATTGAAGATTTTCCTTGCCTCGGTTGGAAGAAGATGGCTGTGGGACAGAATTGGCCAGGGCAGCAGACATATGGGAAGATTTTGCTGGGATTCTACCCTCTACCTCATCAGGAATCCTATCTCTATTGGCCCACCATAGCTTTATAAAGCGGTTGCCCATTACAGCGTCTGGAGCTTTAAGGGCAGCTTCAGCCTCTTCTCTTTTAGAGAATTGAACGAAAGCTTTTTCACTGTTAGATGGAATATAGATATCTATCACCTGCCCAAATTTCTGGAAGTGCGAAAGAAGGGCCTCCCATCTATTGCTTTCTAGAGGAATACCATTTACATAAAGTGTCCGGGATGCTTTATGAGAAGCCCGGTTACTTTGCCGGCCCACATCTCCAAATATTCTCGAATTGGATTGACCATTACTGTCTTTAGCAGAAGCAGGATTGACATGGACAGTGCTAGGAGCCATTTCATCATAACTTTCATTTCTTTTGTTTCCAGTGGCGCTAGTTGAAGTAGCATTAGCTGTCTTGCCATGCCCTAGTTTTTTTGATGCTATTCGCCCCCAAACAGAAGATTTTGAGTTCTGTGAACTATCAGCTGCAAGAACCTGATTTCCCTGCTCCCGAGCTGCTTCATAGCCCAAGGATTCAGCATTCCATACTCCATCAGTATGTGCAAAACCAGCAGATGCATCAGGGTGTTCGTTGTTCCAGAGAGGCTGATCAGGATCATATACATCAGCATCAGAAACAGCTAAAGCAGTGGTTCCATTTAGCTTCAGTACATCATTTGTCACAGCAGATTTGATGTCTTTTGCAGGAACACCTTTACTGCCTCCAAGGCTTGATGTGTTGACAGGAGCAGTTCCTGGTTCATTTTGGATTCCTAGTCCTTGAGTATTTGGAACTGTGACGGGAAGATTGAACTGTGACAGGCTCTGCAAAATATTTTAAGAAATCATTCTATTAAACCTCAATTTTGACATAAGAAAGAAAATTCACTCTAGCAGAGCATGACCACAGGAACCTTGACTCATAACACATAAGCACGGTACATCAAATCTATTCAGCTAACTTGAGTTAAATAATAATAATAAAAAACAATACGCAGCATCAAAGATGAAGCAAACATGCTAGGATTAAATCATAGTATTATACAAAGATTCCTGACAAGATGTTAAGAACATTAAGTAGCAGTTCAATTTATCAGCAATAAAACTGCACTTAGTGAACACCTCTCAAGGCTACAATAATGTTTGACAACAATGGCACTCATGACTGAAAATGTGAAGCAATAGATCAAACCATATTAATATCGCATATATCTCACACAGCATCTTAGAACAATATGATATGATGGAAGTTGGAATACTAAAAAGGACAGTATTGTAAACATGGATACAATTCATAAAGGTATATGCAGATCAAGAAATATACGGACCTGCATGTCTTCAACAACAATTCTATTCAGACCGTGCTCCATGGGGCACATATCCCCTCTCAAGCAAAATCCACGCTCCTCAAAGTCTCTACAACGTTGACGAGGCATGCCAAGATCAATTAAAGGAGATATTGCAGGCTGAATAGGGCCTTGCATTCCAAGTGGATGAATTGGATCCAGCATTCCATTAGGCATTCCAGGCATAAATCCATATGGACCCCAAGAACCATTTTGTGCACTACCACCACTTGGCAATGCAGGACCCATAAATAAGCTAGGATGAGTTGGTGGTCCTTGAGAGGCCATCTGTGATGCAAAGTCAATCATCTCAAGTGTGTTAAATCTTGGTTCATGCTGAGCCCAGGGTGCACCATTCCTTCCTCTTCCACGTGTCATAGGAGCGCGAGCAGCCACAGAAGCTGATGAATCACGAAAGGATGGATTAACTCGAGGTGCCCGACTATGAGCCCCTGCTCCAGGGCGCCTCTTAAATTTCGGAAAGAAATCTTTCTGTGCTTCCCCATGTGAATCAGCTCCACCAGAAATTTTGTGTCTTTTTTTCAGAGGACCCCCTGGAGATTGCTCAGTATTCTCATCAAAAGATTGAGGTCTCGCCTCCCGCTTCCGGTGCTTGTGGTTACGATCATCGTCATCATCATCACTAATTTCAAAGTCTTCATTATCTGTAGCAGCTTCAGAATTTGAGGAATTGTTTTCGTCCTTTGGTGAAGGAACTTCTATTTTATCAGCATCCAATGCAGGAGATGAAGATTCTTTGATCATCTTCAAGTTTCCCAAGCCCACAGCAAACTTTACATCTAGATTTTACTCGCTGTCTTGGCCAAACAATGTAGGTCAACCCCCCCTATTTGTCAGTACATAAGGCAGTAAAATAAATAATGAGCAACAGAAAATAAAGCCAACCATAAGAGAGTAAAAAGGGCTAAATGTCTTTGTAATATACTAATATAGAATGATAAATGGCAAAAGTAACATCAACACAGTGCAGTTTTCTCTTTCAAATTACTACCGCTGAAAGAACACAGTAAGTCTCTAGTATACAAAGCTCACTTGAACTAGTAATTTAATTATGAGAAAGAAAAAAAGGCAAGTTCATGAAACCAAGCATCATATTTAGAGTAACGGTGGAAGATATTTTAGGTTAAGGCTCATTACGATGCGTATATGGTTTTTGTAATAAACCCTTCAGCACCAAAACAAATAGCACAGTGAGACGAGTATATTCAAGCTCTCCTAGTTTTGATTAAAAAGATATCTTTGTAAAGTATCTAGATTAGCAACATGCCAATATCAATCATATGAGTAGTTTCTCATTCAAGAAATGCCCTTCTATTTGTCACCTAACGAAGCAAAATCACCAAGATAGACAGTATTTCCGAACAGACAAACCAATATTTGGAGCTCTTGTCCAGAATAAGCTATTCATGATTCAATCCGATACAATCCCATATTAGCCCAAATTCACATTAATCATTGAAAAAGCCAACTGTCATATATAATGTGACAGCCATCTTGACTTCAACTACAGTGAAAGCAAAACAAAAACCAATGTGGCAGATACCCCGTGTAAACATTCTTCTTTTACAAAATTATGTAAAAAGAAAAGGACTATGTGATGCTAGCATCACTCCGAGGCATTTAAATAGCGCCCATCAGGTACAGTTGAACAGCTCATTCTCCCGACCGAAGAAACTAACTAAAAGTTTCAGGCCCCCATATTCCACAAAGACGGGTAGTGCGCCAACGATCAGACCCCCCATACCCAAAACACGTTTCATCAAAACAGCTAAACAGCGTTCCGATGCGCCTCTCACTACGGACCTTTTACATCCCCTCTACACCGCTAAACTAGTTAGCCCCAAGGCGACCACACTGACAGAACGGGAATGGAAAACCCTCTCTAACTCAGGCATTCCCGCAATCATCGATGACAGTAAATAAGCTCTAGAACCACACGGGGGGCAGAGAGGGCCCTAACGGGTGTGGCACCCGGTGAACCCTAAGCTCATCAGAGGCGGACCTCCCTCTCATGGGGGCGGCGGGCATGGCAAGCCATGGCGGATCTAACATGGGGGCGTAGGGGGTTCAGTCGAACCCAAATTTCTCTAGAACGCAAGCTAGGGTTAACACGAATTCGAGCCCAAAAAAGAAGAACAAAAAAAACAAAGAGGACGTGCGATGCTCACCGGGACGCGGCGGAGGCAACCCTGCTCGGTCGCGGGATGGATGGGGGATCGGCGGCGGCGGCGGCGGCGGCGGCGGGCGAACTCGCGAGGAGTCGGAGTCGGAGTCGAGGGCGAGCGGAGGGGGGGAAATATCGCGGCTCGACGCAACCGCCCGCAGCACCCCCGCACGATGATTTCCGATGATTTGCAC
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| CDS seq | ATGATCAAAGAATCTTCATCTCCTGCATTGGATGCTGATAAAATAGAAGTTCCTTCACCAAAGGACGAAAACAATTCCTCAAATTCTGAAGCTGCTACAGATAATGAAGACTTTGAAATTAGTGATGATGATGACGATGATCGTAACCACAAGCACCGGAAGCGGGAGGCGAGACCTCAATCTTTTGATGAGAATACTGAGCAATCTCCAGGGGGTCCTCTGAAAAAAAGACACAAAATTTCTGGTGGAGCTGATTCACATGGGGAAGCACAGAAAGATTTCTTTCCGAAATTTAAGAGGCGCCCTGGAGCAGGGGCTCATAGTCGGGCACCTCGAGTTAATCCATCCTTTCGTGATTCATCAGCTTCTGTGGCTGCTCGCGCTCCTATGACACGTGGAAGAGGAAGGAATGGTGCACCCTGGGCTCAGCATGAACCAAGATTTAACACACTTGAGATGATTGACTTTGCATCACAGATGGCCTCTCAAGGACCACCAACTCATCCTAGCTTATTTATGGGTCCTGCATTGCCAAGTGGTGGTAGTGCACAAAATGGTTCTTGGGGTCCATATGGATTTATGCCTGGAATGCCTAATGGAATGCTGGATCCAATTCATCCACTTGGAATGCAAGGCCCTATTCAGCCTGCAATATCTCCTTTAATTGATCTTGGCATGCCTCGTCAACGTTGTAGAGACTTTGAGGAGCGTGGATTTTGCTTGAGAGGGGATATGTGCCCCATGGAGCACGGTCTGAATAGAATTGTTGTTGAAGACATGCAGAGCCTGTCACAGTTCAATCTTCCCGTCACAGTTCCAAATACTCAAGGACTAGGAATCCAAAATGAACCAGGAACTGCTCCTGTCAACACATCAAGCCTTGGAGGCAGTAAAGGTGTTCCTGCAAAAGACATCAAATCTGCTGTGACAAATGATGTACTGAAGCTAAATGGAACCACTGCTTTAGCTGTTTCTGATGCTGATGTATATGATCCTGATCAGCCTCTCTGGAACAACGAACACCCTGATGCATCTGCTGGTTTTGCACATACTGATGGAGTATGGAATGCTGAATCCTTGGGCTATGAAGCAGCTCGGGAGCAGGGAAATCAGGTTCTTGCAGCTGATAGTTCACAGAACTCAAAATCTTCTGTTTGGGGGCGAATAGCATCAAAAAAACTAGGGCATGGCAAGACAGCTAATGCTACTTCAACTAGCGCCACTGGAAACAAAAGAAATGAAAGTTATGATGAAATGGCTCCTAGCACTGTCCATGTCAATCCTGCTTCTGCTAAAGACAGTAATGGTCAATCCAATTCGAGAATATTTGGAGATGTGGGCCGGCAAAGTAACCGGGCTTCTCATAAAGCATCCCGGACACTTTATGTAAATGGTATTCCTCTAGAAAGCAATAGATGGGAGGCCCTTCTTTCGCACTTCCAGAAATTTGGGCAGGTGATAGATATCTATATTCCATCTAACAGTGAAAAAGCTTTCGTTCAATTCTCTAAAAGAGAAGAGGCTGAAGCTGCCCTTAAAGCTCCAGACGCTGTAATGGGCAACCGCTTTATAAAGCTATGGTGGGCCAATAGAGATAGGATTCCTGATGAGGTAGAGGGTAGAATCCCAGCAAAATCTTCCCATATGTCTGCTGCCCTGGCCAATTCTGTCCCACAGCCATCTTCTTCCAACCGAGGCAAGGAAAATCTTCAATCTGCAACTCCAAGAGCCAGTTCTGGATCTTCTGCTGAAGCATCAGGTCCTGGTACAGGCCATAAAATGCTTCCTGCAAATAGTGTAAAATCATTACCTCCTGACACCAAAAGGCAAGAAAGTCTTGAGCTCTTGGAAGAACTTCGTAAAAAGCAGGAGATCTTAGCTCAGAAGCGTGATGAATTCCGCCGGCAGTTAGAGAAACTGGCAAAGCAAAAGGGTTTAGCAAATTCAGCCAAACAGGCAGAAGCTGGTGGAAAAGAAGTTGCTTCTAATGATGTACATAGAGTTACTGATTCGAAGTCCATGAACACCGGGACAGAAGGGCCTCGAGATGCTGCTGGTACACTGCAAAACAGAACTTCTGGAGAGCTGGCTTCATCTTCCCACAAATCATCGGCAACATCTGCACAGAAACCAGCTGTAGCTACTAAGCAGACAAGTCCTCTGTTAGTACCATCACAGAATAGGTTTAAGCTTGACAATCGGACCACGTCATTTCGAATCCTTCCACCTTTGCCACCTGAAATCGCAGATGAATCTGTCTTGAAAGATCACTTCATGTCATTTGGGGAGCTTTCATCTGTTGTTCTGGAAGACACTGAAGCGTACAACCATGATGCTACCTTAAAACCTTCTCTGAGTTGCTCAGCTTGTGTGACATACACGACACGACAATCTGCTGAGAAAGCATTTATTGGTGGCAAATCTTGTAAAGGGCATACACTAAGATTTATGTGGTTAACAGCCTCTCCTGGTTCGACTAACCATTCTAGATTCCAGAAAACCTCAATTCCTGCCAGGGCCTCTAGTTTCTCCAGTCAAACTCAAAACATGCCATCTGAGTCTTCAACTACTGTAGGAAAAATGTCATCCACAGTCAAATCCAGTACAACTGCAAAGCCTCACAGTGAATCCATGCCGACTGCCACAAGTGCGAAGACATCTGTTGAAATTCCCAAAGCTTTGTCTTCTAGAGATTCTGATGTTTCACAATGA
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| Protein seq | MIKESSSPALDADKIEVPSPKDENNSSNSEAATDNEDFEISDDDDDDRNHKHRKREARPQSFDENTEQSPGGPLKKRHKISGGADSHGEAQKDFFPKFKRRPGAGAHSRAPRVNPSFRDSSASVAARAPMTRGRGRNGAPWAQHEPRFNTLEMIDFASQMASQGPPTHPSLFMGPALPSGGSAQNGSWGPYGFMPGMPNGMLDPIHPLGMQGPIQPAISPLIDLGMPRQRCRDFEERGFCLRGDMCPMEHGLNRIVVEDMQSLSQFNLPVTVPNTQGLGIQNEPGTAPVNTSSLGGSKGVPAKDIKSAVTNDVLKLNGTTALAVSDADVYDPDQPLWNNEHPDASAGFAHTDGVWNAESLGYEAAREQGNQVLAADSSQNSKSSVWGRIASKKLGHGKTANATSTSATGNKRNESYDEMAPSTVHVNPASAKDSNGQSNSRIFGDVGRQSNRASHKASRTLYVNGIPLESNRWEALLSHFQKFGQVIDIYIPSNSEKAFVQFSKREEAEAALKAPDAVMGNRFIKLWWANRDRIPDEVEGRIPAKSSHMSAALANSVPQPSSSNRGKENLQSATPRASSGSSAEASGPGTGHKMLPANSVKSLPPDTKRQESLELLEELRKKQEILAQKRDEFRRQLEKLAKQKGLANSAKQAEAGGKEVASNDVHRVTDSKSMNTGTEGPRDAAGTLQNRTSGELASSSHKSSATSAQKPAVATKQTSPLLVPSQNRFKLDNRTTSFRILPPLPPEIADESVLKDHFMSFGELSSVVLEDTEAYNHDATLKPSLSCSACVTYTTRQSAEKAFIGGKSCKGHTLRFMWLTASPGSTNHSRFQKTSIPARASSFSSQTQNMPSESSTTVGKMSSTVKSSTTAKPHSESMPTATSAKTSVEIPKALSSRDSDVSQ |
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| Function | Zinc finger CCCH domain-containing protein 27 [UniProtKB/Swiss-Prot:Q0JDM0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0394300 | OsNip_04t0394300-01 | Chr04 | 19383372 | 19391614 | - | RAP2018-11-26 | ||
| CDS seq | ATGATCAAAGAATCTTCATCTCCTGCATTGGATGCTGATAAAATAGAAGTTCCTTCACCAAAGGACGAAAACAATTCCTCAAATTCTGAAGCTGCTACAGATAATGAAGACTTTGAAATTAGTGATGATGATGACGATGATCGTAACCACAAGCACCGGAAGCGGGAGGCGAGACCTCAATCTTTTGATGAGAATACTGAGCAATCTCCAGGGGGTCCTCTGAAAAAAAGACACAAAATTTCTGGTGGAGCTGATTCACATGGGGAAGCACAGAAAGATTTCTTTCCGAAATTTAAGAGGCGCCCTGGAGCAGGGGCTCATAGTCGGGCACCTCGAGTTAATCCATCCTTTCGTGATTCATCAGCTTCTGTGGCTGCTCGCGCTCCTATGACACGTGGAAGAGGAAGGAATGGTGCACCCTGGGCTCAGCATGAACCAAGATTTAACACACTTGAGATGATTGACTTTGCATCACAGATGGCCTCTCAAGGACCACCAACTCATCCTAGCTTATTTATGGGTCCTGCATTGCCAAGTGGTGGTAGTGCACAAAATGGTTCTTGGGGTCCATATGGATTTATGCCTGGAATGCCTAATGGAATGCTGGATCCAATTCATCCACTTGGAATGCAAGGCCCTATTCAGCCTGCAATATCTCCTTTAATTGATCTTGGCATGCCTCGTCAACGTTGTAGAGACTTTGAGGAGCGTGGATTTTGCTTGAGAGGGGATATGTGCCCCATGGAGCACGGTCTGAATAGAATTGTTGTTGAAGACATGCAGAGCCTGTCACAGTTCAATCTTCCCGTCACAGTTCCAAATACTCAAGGACTAGGAATCCAAAATGAACCAGGAACTGCTCCTGTCAACACATCAAGCCTTGGAGGCAGTAAAGGTGTTCCTGCAAAAGACATCAAATCTGCTGTGACAAATGATGTACTGAAGCTAAATGGAACCACTGCTTTAGCTGTTTCTGATGCTGATGTATATGATCCTGATCAGCCTCTCTGGAACAACGAACACCCTGATGCATCTGCTGGTTTTGCACATACTGATGGAGTATGGAATGCTGAATCCTTGGGCTATGAAGCAGCTCGGGAGCAGGGAAATCAGGTTCTTGCAGCTGATAGTTCACAGAACTCAAAATCTTCTGTTTGGGGGCGAATAGCATCAAAAAAACTAGGGCATGGCAAGACAGCTAATGCTACTTCAACTAGCGCCACTGGAAACAAAAGAAATGAAAGTTATGATGAAATGGCTCCTAGCACTGTCCATGTCAATCCTGCTTCTGCTAAAGACAGTAATGGTCAATCCAATTCGAGAATATTTGGAGATGTGGGCCGGCAAAGTAACCGGGCTTCTCATAAAGCATCCCGGACACTTTATGTAAATGGTATTCCTCTAGAAAGCAATAGATGGGAGGCCCTTCTTTCGCACTTCCAGAAATTTGGGCAGGTGATAGATATCTATATTCCATCTAACAGTGAAAAAGCTTTCGTTCAATTCTCTAAAAGAGAAGAGGCTGAAGCTGCCCTTAAAGCTCCAGACGCTGTAATGGGCAACCGCTTTATAAAGCTATGGTGGGCCAATAGAGATAGGATTCCTGATGAGGTAGAGGGTAGAATCCCAGCAAAATCTTCCCATATGTCTGCTGCCCTGGCCAATTCTGTCCCACAGCCATCTTCTTCCAACCGAGGCAAGGAAAATCTTCAATCTGCAACTCCAAGAGCCAGTTCTGGATCTTCTGCTGAAGCATCAGGTCCTGGTACAGGCCATAAAATGCTTCCTGCAAATAGTGTAAAATCATTACCTCCTGACACCAAAAGGCAAGAAAGTCTTGAGCTCTTGGAAGAACTTCGTAAAAAGCAGGAGATCTTAGCTCAGAAGCGTGATGAATTCCGCCGGCAGTTAGAGAAACTGGCAAAGCAAAAGGGTTTAGCAAATTCAGCCAAACAGGCAGAAGCTGGTGGAAAAGAAGTTGCTTCTAATGATGTACATAGAGTTACTGATTCGAAGTCCATGAACACCGGGACAGAAGGGCCTCGAGATGCTGCTGGTACACTGCAAAACAGAACTTCTGGAGAGCTGGCTTCATCTTCCCACAAATCATCGGCAACATCTGCACAGAAACCAGCTGTAGCTACTAAGCAGACAAGTCCTCTGTTAGTACCATCACAGAATAGGTTTAAGCTTGACAATCGGACCACGTCATTTCGAATCCTTCCACCTTTGCCACCTGAAATCGCAGATGAATCTGTCTTGAAAGATCACTTCATGTCATTTGGGGAGCTTTCATCTGTTGTTCTGGAAGACACTGAAGCGTACAACCATGATGCTACCTTAAAACCTTCTCTGAGTTGCTCAGCTTGTGTGACATACACGACACGACAATCTGCTGAGAAAGCATTTATTGGTGGCAAATCTTGTAAAGGGCATACACTAAGATTTATGTGGTTAACAGCCTCTCCTGGTTCGACTAACCATTCTAGATTCCAGAAAACCTCAATTCCTGCCAGGGCCTCTAGTTTCTCCAGTCAAACTCAAAACATGCCATCTGAGTCTTCAACTACTGTAGGAAAAATGTCATCCACAGTCAAATCCAGTACAACTGCAAAGCCTCACAGTGAATCCATGCCGACTGCCACAAGTGCGAAGACATCTGTTGAAATTCCCAAAGCTTTGTCTTCTAGAGATTCTGATGTTTCACAATGA
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| Protein seq | MIKESSSPALDADKIEVPSPKDENNSSNSEAATDNEDFEISDDDDDDRNHKHRKREARPQSFDENTEQSPGGPLKKRHKISGGADSHGEAQKDFFPKFKRRPGAGAHSRAPRVNPSFRDSSASVAARAPMTRGRGRNGAPWAQHEPRFNTLEMIDFASQMASQGPPTHPSLFMGPALPSGGSAQNGSWGPYGFMPGMPNGMLDPIHPLGMQGPIQPAISPLIDLGMPRQRCRDFEERGFCLRGDMCPMEHGLNRIVVEDMQSLSQFNLPVTVPNTQGLGIQNEPGTAPVNTSSLGGSKGVPAKDIKSAVTNDVLKLNGTTALAVSDADVYDPDQPLWNNEHPDASAGFAHTDGVWNAESLGYEAAREQGNQVLAADSSQNSKSSVWGRIASKKLGHGKTANATSTSATGNKRNESYDEMAPSTVHVNPASAKDSNGQSNSRIFGDVGRQSNRASHKASRTLYVNGIPLESNRWEALLSHFQKFGQVIDIYIPSNSEKAFVQFSKREEAEAALKAPDAVMGNRFIKLWWANRDRIPDEVEGRIPAKSSHMSAALANSVPQPSSSNRGKENLQSATPRASSGSSAEASGPGTGHKMLPANSVKSLPPDTKRQESLELLEELRKKQEILAQKRDEFRRQLEKLAKQKGLANSAKQAEAGGKEVASNDVHRVTDSKSMNTGTEGPRDAAGTLQNRTSGELASSSHKSSATSAQKPAVATKQTSPLLVPSQNRFKLDNRTTSFRILPPLPPEIADESVLKDHFMSFGELSSVVLEDTEAYNHDATLKPSLSCSACVTYTTRQSAEKAFIGGKSCKGHTLRFMWLTASPGSTNHSRFQKTSIPARASSFSSQTQNMPSESSTTVGKMSSTVKSSTTAKPHSESMPTATSAKTSVEIPKALSSRDSDVSQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.050985 | 3.248117 | 4.320200 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32340 | RBH | 2.051706 | 2.171351 | 1.105344 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0394300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011620 | RBH | 1.240451 | 23.319078 | 6.487533 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012420 | RBH | 0.853735 | 1.391746 | 3.558527 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012110 | RBH | 1.955823 | 7.167735 | 13.608560 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011770 | RBH | 0.504617 | 0.316687 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0012030 | RBH | 0.931611 | 2.456889 | 6.616468 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0308100 | RBH | 3.111251 | 7.3592555 | 2.9214755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010940 | RBH | 0.411690 | 0.000000 | 0.439065 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0305200 | RBH | 2.416669 | 6.7069065 | 6.033999 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011590 | RBH | 0.211027 | 0.239423 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011200 | RBH | 0.658635 | 2.934639 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011210 | RBH | 4.128793 | 9.758816 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011710 | RBH | 0.459923 | 0.398856 | 0.353692 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011940 | RBH | 0.037944 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011130 | RBH | 0.637570 | 4.976045 | 2.919816 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011110 | RBH | 0.767433 | 9.338324 | 4.110528 |
