Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0032710 | OGI:03083400 | 5/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:32274551-32275548 | ||||||||
| Gene Symbol | PR5 | ||||||||||
| DNA seq | ttagttacgtctgtccttccagcagcaggtagttacagtcacacacacaatgactttctctgctaagatggggacatccactgggccgttcagtcgctgggccgttggcgtacgcgcgtgcgggctggggaataatgtacgggctgtgcctctgtcgcgggacacgaccgatcggatggatatgtagggggaaaaagtacaccgaaggtccctcaacttgtcatcgagctacaaaatcgtcccccaaccacaaaacgaggtatccagcgtccctcaactataggtccacaataggtccttcggtgattttgaccccggttttgtcctaagtggcagctgagtcagcgtgggacccacgtgggccccacatgtcaggctgccacatcagcctcctctctccctctcttttccactcttctctccctcatctctctctcccttctctgactcagccgacgggaggaggagggcgtcggcggccggcgaggggcgatgcggcggcggtggggggagaagctgcgggtgggcggcggggaggggcggcgaggagcagagcgcgggtggtgggggtaggagcggcgcgcgggctcccccgtcggccgctgcccacgaggctcacgtcatagaagtccttcccgtcggcgccgcccagcgtgaactccgcgagggtgacgggcggcgcgccgccgagggagcagctcacggcgccgccgaagtcccccgtggcgcaggcgagggacgcggtgctgtagggtgcacagtccgtgcgcgcccacaagcggccggaccaaccatccggggctaggaatgagacgttggcgttgggcgacagcccgaagtcgccgcccccaacagcccccgaccgctgtgtttccggacaaggtggtcacccagacgatgtaggtgtagttgttgcgcagcgtgaagaccgtcgtgccagctgcctcagcgccgaactgcaactgcgaccataggaaccctgcattgagacacgccat
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| CDS seq | atggcgtgtctcaatgcagggttcctatggtcgcagttgcagttcggcgctgaggcagctggcacgacggtcttcacgctgcgcaacaactacacctacatcgtctggcggtcgggggctgttgggggcggcgacttcgggctgtcgcccaacgccaacgtctcattcctagccccggatggttggtccggccgcttgtgggcgcgcacggactgtgcaccctacagcaccgcgtccctcgcctgcgccacgggggacttcggcggcgccgtgagctgctccctcggcggcgcgccgcccgacagacgtaactaa |
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| Protein seq | MACLNAGFLWSQLQFGAEAAGTTVFTLRNNYTYIVWRSGAVGGGDFGLSPNANVSFLAPDGWSGRLWARTDCAPYSTASLACATGDFGGAVSCSLGGAPPDRRN |
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| Function | Pathogenesis-related thaumatin-like protein 3.5 [UniProtKB/Swiss-Prot:Q5DWG1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0032710 | OsNaBo_03g0032710.01 | Chr03 | 32274551 | 32275548 | - | NAM | ||
| CDS seq | atggcgtgtctcaatgcagggttcctatggtcgcagttgcagttcggcgctgaggcagctggcacgacggtcttcacgctgcgcaacaactacacctacatcgtctggcggtcgggggctgttgggggcggcgacttcgggctgtcgcccaacgccaacgtctcattcctagccccggatggttggtccggccgcttgtgggcgcgcacggactgtgcaccctacagcaccgcgtccctcgcctgcgccacgggggacttcggcggcgccgtgagctgctccctcggcggcgcgccgcccgacagacgtaactaa
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| Protein seq | MACLNAGFLWSQLQFGAEAAGTTVFTLRNNYTYIVWRSGAVGGGDFGLSPNANVSFLAPDGWSGRLWARTDCAPYSTASLACATGDFGGAVSCSLGGAPPDRRN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0233200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g46070 | SBH | 19.543270 | 16.820456 | 2.633747 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0233200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009900 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0009760 | SBH | 0.0 | 5.072670 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0009800 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0033530 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0009620 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0509200 | RBH | 0.0835945 | 0 | 0.0306245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009530 | SBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0510400 | SBH | 8.5316555 | 0.1302985 | 0.8747375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009630 | SBH | 0.0 | 0.058724 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009720 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0009700 | SBH | 0.0 | 0.126092 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0009650 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G032870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024780 | RBH | 0.0 | 0.0 | 0.0 |
