Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0233200 | OGI:03018600 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:7066551-7067714 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACTGCTGCTGCGCGGGGCAGAAGGTGATGACGTACTGCGCGCCGGTGCCGCACGTGAACGTGCTGGTGGGGTCGTCGTACGCGTAGCTGTACGCCGCCGGGCACGCCGCCTTGAACAGCCGCGAGTACCTCGTCGGCCCGCAGCTGTCCGGCCCGCCGTGCGCCCCCGTGCAGCAGTACTCCGCCGTCCCGAACGCCTCGCACGCGCTCCGGCACGCCACCGTCGTCGTCGCCGCCGCCCCGGACTGCTGGTCGTTCTCCTTCCCCGCCACCTGCAGCTCCGCGGGGCACAGCGCGTTCACGTCGCCGACGCACCCGGCGTACCCGCACGTCGAGCGGTTCACCCTGGCGCCCGTCGCCGCCACGCCGATGCCGACGTTGTACCCGTCCACCAGGCTCACGTCGTAGAAGTCCTTCCCGTCGGTGCCGCCCAGCGTGAACTCGGCGAGGGTGACAGGCGGCGCGCCGCCGAGGGAGCAGCTCACGGCGCCGCCGCAGTCCCCCGTGACGCAGGCGAGGGACGCGGTGCCGGAGGGTGCACAGTCCGTGCGCGCCCACAAGCGGCCGGACCAACCAGCCGGGGCCGGGAACGAGACGTTGGCGCCGGGCGACAGCTCGAACCCGCCGCCCCCGACGGCCACCGCGGTGTTGCCGGACAAGGTGGCCGGCCAGACGGTGTAGGTGCAGTTGTTGCGCAGCGTGAAGACCGTCGTGCCGACTGCCTCAGCGCCGAACTGCAGCTGCGACCATAGGACCCCTGCATTGAGACACGCATTGTTGAAGAATAAAGAAGATGTATGCTAACAGCCTAAAGTTAACCTGAAAGTTTCTCAGACTTACCAACGATGATTTGAAGGGCTGGAGTTCGTCCGAATTCCATGGATTGAAATGGTTTAGCTCGAATGAGAAAAAAAATGAATATGTGTTTTTTTTTTGGAATTGAGGAGAGAAATGGCAGTTGAACAATGCGGGTAATAGAAGAGGAAATGCGCAAATGGTGAACTAGCAGCAACAGTAATTTGCCCGGTGATTATCTTGTTTATATGGACGTTGGTGATATCCTCAGATATTAGGTGGGAACTGGAGAGAACATGGCGGAGTTTGTTGAGAATTCGGAGGAAGGCACGAGCAGCGCCGGACGTCGCGTGCCCAACTTCTGCCAT
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| CDS seq | ATGGCAGAAGTTGGGCACGCGACGTCCGGCGCTGCTCGTGCCTTCCTCCGAATTCTCAACAAACTCCGCCATGTTCTCTCCAGTTCCCACCTAATATCTGAGGATATCACCAACGTCCATATAAACAAGATAATCACCGGGCAAATTACTGTTGCTGCTAGGGTCCTATGGTCGCAGCTGCAGTTCGGCGCTGAGGCAGTCGGCACGACGGTCTTCACGCTGCGCAACAACTGCACCTACACCGTCTGGCCGGCCACCTTGTCCGGCAACACCGCGGTGGCCGTCGGGGGCGGCGGGTTCGAGCTGTCGCCCGGCGCCAACGTCTCGTTCCCGGCCCCGGCTGGTTGGTCCGGCCGCTTGTGGGCGCGCACGGACTGTGCACCCTCCGGCACCGCGTCCCTCGCCTGCGTCACGGGGGACTGCGGCGGCGCCGTGAGCTGCTCCCTCGGCGGCGCGCCGCCTGTCACCCTCGCCGAGTTCACGCTGGGCGGCACCGACGGGAAGGACTTCTACGACGTGAGCCTGGTGGACGGGTACAACGTCGGCATCGGCGTGGCGGCGACGGGCGCCAGGGTGAACCGCTCGACGTGCGGGTACGCCGGGTGCGTCGGCGACGTGAACGCGCTGTGCCCCGCGGAGCTGCAGGTGGCGGGGAAGGAGAACGACCAGCAGTCCGGGGCGGCGGCGACGACGACGGTGGCGTGCCGGAGCGCGTGCGAGGCGTTCGGGACGGCGGAGTACTGCTGCACGGGGGCGCACGGCGGGCCGGACAGCTGCGGGCCGACGAGGTACTCGCGGCTGTTCAAGGCGGCGTGCCCGGCGGCGTACAGCTACGCGTACGACGACCCCACCAGCACGTTCACGTGCGGCACCGGCGCGCAGTACGTCATCACCTTCTGCCCCGCGCAGCAGCAGTGA
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| Protein seq | MAEVGHATSGAARAFLRILNKLRHVLSSSHLISEDITNVHINKIITGQITVAARVLWSQLQFGAEAVGTTVFTLRNNCTYTVWPATLSGNTAVAVGGGGFELSPGANVSFPAPAGWSGRLWARTDCAPSGTASLACVTGDCGGAVSCSLGGAPPVTLAEFTLGGTDGKDFYDVSLVDGYNVGIGVAATGARVNRSTCGYAGCVGDVNALCPAELQVAGKENDQQSGAAATTTVACRSACEAFGTAEYCCTGAHGGPDSCGPTRYSRLFKAACPAAYSYAYDDPTSTFTCGTGAQYVITFCPAQQQ |
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| Function | Pathogenesis-related protein 5 [UniProtKB/Swiss-Prot:P28493] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0233200 | Os03t0233200-00 | Chr03 | 7066551 | 7067714 | - | irgsp1_rep | ||
| CDS seq | ATGGCAGAAGTTGGGCACGCGACGTCCGGCGCTGCTCGTGCCTTCCTCCGAATTCTCAACAAACTCCGCCATGTTCTCTCCAGTTCCCACCTAATATCTGAGGATATCACCAACGTCCATATAAACAAGATAATCACCGGGCAAATTACTGTTGCTGCTAGGGTCCTATGGTCGCAGCTGCAGTTCGGCGCTGAGGCAGTCGGCACGACGGTCTTCACGCTGCGCAACAACTGCACCTACACCGTCTGGCCGGCCACCTTGTCCGGCAACACCGCGGTGGCCGTCGGGGGCGGCGGGTTCGAGCTGTCGCCCGGCGCCAACGTCTCGTTCCCGGCCCCGGCTGGTTGGTCCGGCCGCTTGTGGGCGCGCACGGACTGTGCACCCTCCGGCACCGCGTCCCTCGCCTGCGTCACGGGGGACTGCGGCGGCGCCGTGAGCTGCTCCCTCGGCGGCGCGCCGCCTGTCACCCTCGCCGAGTTCACGCTGGGCGGCACCGACGGGAAGGACTTCTACGACGTGAGCCTGGTGGACGGGTACAACGTCGGCATCGGCGTGGCGGCGACGGGCGCCAGGGTGAACCGCTCGACGTGCGGGTACGCCGGGTGCGTCGGCGACGTGAACGCGCTGTGCCCCGCGGAGCTGCAGGTGGCGGGGAAGGAGAACGACCAGCAGTCCGGGGCGGCGGCGACGACGACGGTGGCGTGCCGGAGCGCGTGCGAGGCGTTCGGGACGGCGGAGTACTGCTGCACGGGGGCGCACGGCGGGCCGGACAGCTGCGGGCCGACGAGGTACTCGCGGCTGTTCAAGGCGGCGTGCCCGGCGGCGTACAGCTACGCGTACGACGACCCCACCAGCACGTTCACGTGCGGCACCGGCGCGCAGTACGTCATCACCTTCTGCCCCGCGCAGCAGCAGTGA
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| Protein seq | MAEVGHATSGAARAFLRILNKLRHVLSSSHLISEDITNVHINKIITGQITVAARVLWSQLQFGAEAVGTTVFTLRNNCTYTVWPATLSGNTAVAVGGGGFELSPGANVSFPAPAGWSGRLWARTDCAPSGTASLACVTGDCGGAVSCSLGGAPPVTLAEFTLGGTDGKDFYDVSLVDGYNVGIGVAATGARVNRSTCGYAGCVGDVNALCPAELQVAGKENDQQSGAAATTTVACRSACEAFGTAEYCCTGAHGGPDSCGPTRYSRLFKAACPAAYSYAYDDPTSTFTCGTGAQYVITFCPAQQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0233200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g13070 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009900 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0009760 | SBH | 0.0 | 5.072670 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0009800 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0009730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0009620 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0116600 | SBH | 0.0052505 | 0.067629 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009530 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0116500 | SBH | 0.006783 | 0.04076 | 0.0299505 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009630 | RBH | 0.0 | 0.058724 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009720 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0009630 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0009700 | RBH | 0.0 | 0.126092 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0009650 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G009630 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009550 | RBH | 0.0 | 0.0 | 0.0 |
