Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0011300 | OGI:03023140 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:8728151-8732514 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgatcgtcaagacgCcaaatgccaatcgcgacgtggCtgtaaacgccaaactgccaactggagaacaacaaccaaccaatcgtagcttttcctttggaatacccgtaccactgcacaggaatcgttgatgagctgccgtacaccctttgttctaacaagaagacatccacggcaattccaacctaagctactgtcatcggaagttccaaagtttggcaaagcacggcatatgatggcaaagacaaataaatcaccaccacgaacatgcatatttacatcgtcagttcctacttacactcatgcgcttgaatgcacatttaacctattctccgggctgaatattagccgctgactaaaccacgacatatCcccCTCGCAGCAAACTATGAGAAAGAATCAACAAATGAAACGCAATGGTTGGGGTTGACGACTGTGCTGTTGACAATATTGCTTCCCGGTAACGAATCGTCCTCCCCGGCCAGCTCCACATGATTAGCAGAACTAATATCTGCAAGAGAGAATATGCACGCCAGTCAAAAGTCAGATTAACCACGCGCTCAATGTCAACCTAGTGCGCCACAACCGGGCAGCTGACGGTAACAACTTTGTATTATATTTGATATGGACGAATCTGTGTTCCGGCGATGATGTGTGAAAATCGTTTGCCCAACTTTTCTTTCGAAGCAAAACAATTGTGTAGGAACAGTTTAAATATTTACTATTTTTGCATGAGTGGAAAGCAAGTTAAAGAAGACTAACTTACCATTCCACCGATATTCTGAAGCCGTCCTCAATTCTATCCATTTATGCCGCGTACCGATGAATTTGAGCGCGAAGATGTCCTCATAGACCTTATCGACCGCATTGACCTATTAACGAAAGGATGCTCCAGCAGCTTTGCTGCAGAGGGTCTGTCTTGCGGATTGGGTTTTACGCACTGGCTTATAAAATCACGAGCATCCCTAGAAAGGCAATTTGGAATTGCTGGTGGTTCCCCCTTCCCAATCCTGTATAAAGCTTGTGTCTGCAGAACAAGTTGAGAAAATGGGGTAAATGCAAAAAGGAAACAAAGTAATATatgcatactggataattatcaaacttggaaccaacaccataactgaatttggaggagctaaattagattcctgatgaacaataactcacccattccagaccaggatagggaagttgacgtgtcaacatctctaggactgtgcagcccagactccatatatcagcttcaGgtccatatgttgtcttgggattgacaacctgaaatttcatcattatcttaggaggcaactacaacattatctaacatcaatgcaTtataaacacatttttggctttttacctcctacctaTtAGtttgttattctagataaaccatcaaaatAaaagaaggtaaacaaatactacctctgtttcaagttataacggaggaagtaaaacccaagcatgtccaaatctAatctaatagaaatattgtgccatacctcaggtgccatccaataaacagttcctttgcacgatttaagcacgttgaaTttggtaatctgagagatttgaCagaaatcaatcatataAATgagaTaaattttaaaataataactgaaacattcaaagattaaaaaggaacataaagatttcgcgagagtaagcaGacctccttaGcaagaccaaagtcagcaagtttcacggatccattggcatgcaccaatatattggcacatttgatatccctgcaagacgagatttgaactgttattcacttattcagaatAaatgtacagtaccagttccttaagaatcttcaagctaacgataaaaatcagtgagcaGgcattaattagaataactgtcagctgaagtgAaaaaaaaaaacaataagcctccttagaaggctAaacagcagatatgctgattcagctaatgttattacctatgaacaatgtttcgttcatgcaggtaagtcaacccattaagaatctgtcttgtatatgctgaaacatgagtatctcgcagtctgtACctctgatacaaagatgcAagagatccttGggtgactaattcAaggaagatgtacagttttgagtcctcctgcagtagtcacaagaatggttcaatatgaGccttaaaagaaaaaaagtacaagaaaactagaaatttacatacagcccaatagcaaatggtgcttcaacAaaatgatgaatggtcgAtcaataacTtactttgtcggtaccatagtactgcAcaatattttcatgttcaaactgactcaaaagtgcgaTttcctaaaatatgaaaagAagttaggacagatcacatttacaatacaacagaaccAgtaagatattatAgccctGGgccctggcattattgacaaACcaaaaggaaacaccAacctgctcaagctgaaaaatgcactgctgtgcAttgctcccttgatcAcacaagcagacctctttgacagcaaagAagacaccctcgctgtaaaacatcaaatcataagatgtcgatAtcaactattccggcatgtaagagacatgtgttatgcaaacattacagcagcctatactaagaataactgttgcaattgaacaccacataaaAGgaacaacaGgtattacaatgattcatttaggacagccAGgtcatgtgcatcttctagaagctAagtttcacatgtttcagaacccttagtgattaaacatatgtttacatcatGtcatattgaacacaacAaatcaaataaATtaagtactattacattcAacattctgactctagcggaattctgattgtctacagcgtagggttatgctattcaagtagttgAaaatgAaatcatgttgatgaTtcaattaccacttactagtaccctacacgccatctagcaactgtacttaaagagatAtaattggagacatacagtgtacaatcaatcagagaatcaattttcctaaattcgggttaacaatggcttccaaGatatgccttatgctatcTtagggcaggttaaattgttgggtctcacaaattctcgaccacAaagtgaacaatcaGcatatagaaatcataagcacAaagtgaacaatcaacatatagaaatcataagcacaaagtgagcgatcagcatatagaaatcataaaatttactctttagagcacttactcgctgatcccctcgaagactgtcccaaacGAgccacttcccaggagcatcccccggttccacgaccggatcttcctcctaaacctcccattcggcgagatgtagaacatggactcGgtggttgtgctcgacgtttcgtcatcgttcgtcgtcgacagcgaagacgtgcccgtgaattcctcggacgtctcccctagcctgagctcctccagcgtcaacaccgcggccgcatcatcctcctcctcacccgcGtcctggcatgcggaatcaCcaccagatctgctcgccggggcgtgagcatGgctatcctcctccggcgcgaacgaccgcaagatAtcccacgtggactccaccacgcagaccgccggccgtaccatcgacGgcggcggcttgagcacgaccggcggcggccgcacgcccttgatccctccctcgccgctcgccttcctcacatctggacgggctggctcccacggatccacccgtaataggggcgctggagcttcaattgcCAcggacctgggcgtttccttcgccGggagcacgggagcagcggcgggggcgggcagggagggcggctCctcctcggcggcaacctcgcggcggacaggagagtccctcgcggggggttcctcgcgcggcttgggggtggaggcggaggaggagaaGgaggagcggccGgccttgtgcgcctcccagtcagcgacggggacggcgaagtcgtcgacgccggagaggccgaggctggagcagagcagctgcacgtccctgcacccgtcgccgctcccgccgatccggaagctcgtgaggtcgagggagcacgccggggagcaggcgagcgacggcgaCccggacgcaggcgcggacgcggcgggcggggactgcgggtaggcgcagaagTtcgaggcgtcgtatccgatgtgcttcgcggcgttccggcgttcgagccggcGgcgccgcctcgacgagcccccagacgacgacgacggcgacggcggcgcggcgggcggccccatcgtcGgcctcagctcatggacgagagagagaggggAaggatggttcgtgataagtgcctagcgagcgagactcctcttggcttggctttGggtttgggggagaagagGAgagaagagaagggaagacggcaagctgcagatttttaTtttttttctccgtttcgcccact
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| CDS seq | atggggccgcccgccgcgccgccgtcgccgtcgtcgtcgtctgggggctcgtcgaggcggcgcCgccggctcgaacgccggaacgccgcgaagcacatcggatacgacgcctcgaActtctgcgcctacccgcagtccccgcccgccgcgtccgcgcctgcgtccggGtcgccgtcgctcgcctgctccccggcgtgctccctcgacctcacgagcttccggatcggcgggagcggcgacgggtgcagggacgtgcagctgctctgctccagcctcggcctctccggcgtcgacgacttcgccgtccccgtcgctgactgggaggcgcacaaggcCggccgctcctcCttctcctcctccgcctccacccccaagccgcgcgaggaaccccccgcgagggactctcctgtccgccgcgaggttgccgccgaggagGagccgccctccctgcccgcccccgccgctgctcccgtgctccCggcgaaggaaacgcccaggtccgTGgcaattgaagctccagcgcccctattacgggtggatccgtgggagccagcccgtccagatgtgaggaaggcgagcggcgagggagggatcaagggcgtgcggccgccgccggtcgtgctcaagccgccgcCgtcgatggtacggccggcggtctgcgtggtggagtccacgtgggaTatcttgcggtcgttcgcgccggaggaggatagcCatgctcacgccccggcgagcagatctggtgGtgattccgcatgccaggaCgcgggtgaggaggaggatgatgcggccgcggtgttgacgctggaggagctcaggctaggggagacgtccgaggaattcacgggcacgtcttcgctgtcgacgacgaacgatgacgaaacgtcgagcacaaccacCgagtccatgttctacatctcgccgaatgggaggtttaggaggaagatccggtcgtggaaccgggggatgctcctgggaagtggcTCgtttgggacagtcttcgaggggatcagcgacgagggtgtctTctttgctgtcaaagaggtctgcttgtgTgatcaagggagcaaTgcacagcagtgcatttttcagcttgagcaggaaAtcgcacttttgagtcagtttgaacatgaaaatattgTgcagtactatggtaccgacaaagaggactcaaaactgtacatcttcctTgaattagtcaccCaaggatctctTgcatctttgtatcagagGTacagactgcgagatactcatgtttcagcatatacaagacagattcttaatgggttgacttacctgcatgaacgaaacattgttcatagggatatcaaatgtgccaatatattggtgcatgccaatggatccgtgaaacttgctgactttggtcttgCtaaggagattaccaaAttcaacgtgcttaaatcgtgcaaaggaactgtttattggatggcacctgaggttgtcaatcccaagacaacatatggacCtgaagctgatatatggagtctgggctgcacagtcctagagatgttgacacgtcaacttccctatcctggtctggaatggACACAAGCTTTATACAGGATTGGGAAGGGGGAACCACCAGCAATTCCAAATTGCCTTTCTAGGGATGCTCGTGATTTTATAAGCCAGTGCGTAAAACCCAATCCGCAAGACAGACCCTCTGCAGCAAAGCTGCTGGAGCATCCTTTCGTCAATGCGGTCGATAAGGTCTATGAGGACATCTTCGCGCTCAAATTCATCGGTACGCGGCATAAATGGATAGAATTGAGGACGGCTTCAGAATATCGGTGGAATGATATTAGTTCTGCTAATCATGTGGAGCTGGCCGGGGAGGACGATTCGTTACCGGGAAGCAATATTGTCAACAGCACAGTCGTCAACCCCAACCATTGCGTTTCATTTGTTGATTCTTTCTCATAG
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| Protein seq | MGPPAAPPSPSSSSGGSSRRRRRLERRNAAKHIGYDASNFCAYPQSPPAASAPASGSPSLACSPACSLDLTSFRIGGSGDGCRDVQLLCSSLGLSGVDDFAVPVADWEAHKAGRSSFSSSASTPKPREEPPARDSPVRREVAAEEEPPSLPAPAAAPVLPAKETPRSVAIEAPAPLLRVDPWEPARPDVRKASGEGGIKGVRPPPVVLKPPPSMVRPAVCVVESTWDILRSFAPEEDSHAHAPASRSGGDSACQDAGEEEDDAAAVLTLEELRLGETSEEFTGTSSLSTTNDDETSSTTTESMFYISPNGRFRRKIRSWNRGMLLGSGSFGTVFEGISDEGVFFAVKEVCLCDQGSNAQQCIFQLEQEIALLSQFEHENIVQYYGTDKEDSKLYIFLELVTQGSLASLYQRYRLRDTHVSAYTRQILNGLTYLHERNIVHRDIKCANILVHANGSVKLADFGLAKEITKFNVLKSCKGTVYWMAPEVVNPKTTYGPEADIWSLGCTVLEMLTRQLPYPGLEWTQALYRIGKGEPPAIPNCLSRDARDFISQCVKPNPQDRPSAAKLLEHPFVNAVDKVYEDIFALKFIGTRHKWIELRTASEYRWNDISSANHVELAGEDDSLPGSNIVNSTVVNPNHCVSFVDSFS |
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| Function | Mitogen-activated protein kinase kinase kinase 1 [UniProtKB/Swiss-Prot:Q39008] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0011300 | OsNaBo_03g0011300.01 | Chr03 | 8728151 | 8732514 | - | NAM | ||
| CDS seq | atggggccgcccgccgcgccgccgtcgccgtcgtcgtcgtctgggggctcgtcgaggcggcgcCgccggctcgaacgccggaacgccgcgaagcacatcggatacgacgcctcgaActtctgcgcctacccgcagtccccgcccgccgcgtccgcgcctgcgtccggGtcgccgtcgctcgcctgctccccggcgtgctccctcgacctcacgagcttccggatcggcgggagcggcgacgggtgcagggacgtgcagctgctctgctccagcctcggcctctccggcgtcgacgacttcgccgtccccgtcgctgactgggaggcgcacaaggcCggccgctcctcCttctcctcctccgcctccacccccaagccgcgcgaggaaccccccgcgagggactctcctgtccgccgcgaggttgccgccgaggagGagccgccctccctgcccgcccccgccgctgctcccgtgctccCggcgaaggaaacgcccaggtccgTGgcaattgaagctccagcgcccctattacgggtggatccgtgggagccagcccgtccagatgtgaggaaggcgagcggcgagggagggatcaagggcgtgcggccgccgccggtcgtgctcaagccgccgcCgtcgatggtacggccggcggtctgcgtggtggagtccacgtgggaTatcttgcggtcgttcgcgccggaggaggatagcCatgctcacgccccggcgagcagatctggtgGtgattccgcatgccaggaCgcgggtgaggaggaggatgatgcggccgcggtgttgacgctggaggagctcaggctaggggagacgtccgaggaattcacgggcacgtcttcgctgtcgacgacgaacgatgacgaaacgtcgagcacaaccacCgagtccatgttctacatctcgccgaatgggaggtttaggaggaagatccggtcgtggaaccgggggatgctcctgggaagtggcTCgtttgggacagtcttcgaggggatcagcgacgagggtgtctTctttgctgtcaaagaggtctgcttgtgTgatcaagggagcaaTgcacagcagtgcatttttcagcttgagcaggaaAtcgcacttttgagtcagtttgaacatgaaaatattgTgcagtactatggtaccgacaaagaggactcaaaactgtacatcttcctTgaattagtcaccCaaggatctctTgcatctttgtatcagagGTacagactgcgagatactcatgtttcagcatatacaagacagattcttaatgggttgacttacctgcatgaacgaaacattgttcatagggatatcaaatgtgccaatatattggtgcatgccaatggatccgtgaaacttgctgactttggtcttgCtaaggagattaccaaAttcaacgtgcttaaatcgtgcaaaggaactgtttattggatggcacctgaggttgtcaatcccaagacaacatatggacCtgaagctgatatatggagtctgggctgcacagtcctagagatgttgacacgtcaacttccctatcctggtctggaatggACACAAGCTTTATACAGGATTGGGAAGGGGGAACCACCAGCAATTCCAAATTGCCTTTCTAGGGATGCTCGTGATTTTATAAGCCAGTGCGTAAAACCCAATCCGCAAGACAGACCCTCTGCAGCAAAGCTGCTGGAGCATCCTTTCGTCAATGCGGTCGATAAGGTCTATGAGGACATCTTCGCGCTCAAATTCATCGGTACGCGGCATAAATGGATAGAATTGAGGACGGCTTCAGAATATCGGTGGAATGATATTAGTTCTGCTAATCATGTGGAGCTGGCCGGGGAGGACGATTCGTTACCGGGAAGCAATATTGTCAACAGCACAGTCGTCAACCCCAACCATTGCGTTTCATTTGTTGATTCTTTCTCATAG
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| Protein seq | MGPPAAPPSPSSSSGGSSRRRRRLERRNAAKHIGYDASNFCAYPQSPPAASAPASGSPSLACSPACSLDLTSFRIGGSGDGCRDVQLLCSSLGLSGVDDFAVPVADWEAHKAGRSSFSSSASTPKPREEPPARDSPVRREVAAEEEPPSLPAPAAAPVLPAKETPRSVAIEAPAPLLRVDPWEPARPDVRKASGEGGIKGVRPPPVVLKPPPSMVRPAVCVVESTWDILRSFAPEEDSHAHAPASRSGGDSACQDAGEEEDDAAAVLTLEELRLGETSEEFTGTSSLSTTNDDETSSTTTESMFYISPNGRFRRKIRSWNRGMLLGSGSFGTVFEGISDEGVFFAVKEVCLCDQGSNAQQCIFQLEQEIALLSQFEHENIVQYYGTDKEDSKLYIFLELVTQGSLASLYQRYRLRDTHVSAYTRQILNGLTYLHERNIVHRDIKCANILVHANGSVKLADFGLAKEITKFNVLKSCKGTVYWMAPEVVNPKTTYGPEADIWSLGCTVLEMLTRQLPYPGLEWTQALYRIGKGEPPAIPNCLSRDARDFISQCVKPNPQDRPSAAKLLEHPFVNAVDKVYEDIFALKFIGTRHKWIELRTASEYRWNDISSANHVELAGEDDSLPGSNIVNSTVVNPNHCVSFVDSFS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0011300 | OsNaBo_03g0011300.02 | Chr03 | 8728211 | 8732498 | - | IsoSeq | ||
| CDS seq | atgacgaaacgtcgagcacaaccacCgagtccatgttctacatctcgccgaatgggaggtttaggaggaagatccggtcgtggaaccgggggatgctcctgggaagtggcTCgtttgggacagtcttcgaggggatcagcgacgagggtgtctTctttgctgtcaaagaggtctgcttgtgTgatcaagggagcaaTgcacagcagtgcatttttcagcttgagcaggaaAtcgcac
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| Protein seq | MTKRRAQPPSPCSTSRRMGGLGGRSGRGTGGCSWEVARLGQSSRGSATRVSSLLSKRSACVIKGAMHSSAFFSLSRKSH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 8728914 | 8729174 | - | OsNaBo_03g0011300.02 | OsNaBo_03g0011300.01,OsNaBo_03g0011300.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.190235 | 21.003841 | 6.375943 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0262200 | RBH | 2.877811 | 2.450112 | 5.238444 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g15570 | RBH | 1.953127 | 1.580384 | 1.233908 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0262200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0011760 | RBH | 0.301367 | 14.233616 | 4.549437 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0011590 | RBH | 0.253523 | 3.334927 | 3.191709 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0011610 | RBH | 2.005717 | 5.757452 | 6.903831 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0011580 | RBH | 0.344124 | 0.256577 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0011440 | RBH | 7.510090 | 16.335958 | 14.836373 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0144700 | RBH | 8.924344 | 72.2642975 | 16.693718 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0011330 | RBH | 0.242589 | 0.681625 | 0.794813 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0145900 | RBH | 10.686834 | 79.662056 | 23.2518685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0011480 | RBH | 0.536792 | 0.120688 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0011550 | RBH | 1.330814 | 11.847241 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0011530 | RBH | 6.516989 | 11.837562 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0011500 | RBH | 0.678083 | 0.905852 | 1.371943 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0011440 | RBH | 0.186387 | 9.849440 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G011430 | RBH | 0.602168 | 1.941185 | 1.196787 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0030830 | RBH | 2.773051 | 27.019495 | 6.592595 |
