Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsNaBo_01g0042880 | OGI:01102940 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:39673767-39677341 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | atggaaaggtatataatctatacttatgcttgtgacctacttgttctatctatcatgtagggatgttaccaacaatatgtgtgtgttttgaggaattctttttgaatgtttttaatccttgttcaactggttcaagagtccgaatttgctggtttgctatgcaaccttagcatgtgcatagctaaccatatcttgcttgcgtatcttcaggatataatcaagcattagcaatatctctttgtgtgaatatgctgtgcattgtaattaaacaacggcctctccaccttaggtgcttatttgaattaatagatagtgagtttaataaattacatcaaacaatggtagcatgaagtaatataagaaagtagccatatgtttacaactttgttaaaagtagtttaagctggatatgtttttacattggtatgatatttctgttagataggtcttccatgcattagttattcagtccctgtatatttagatgtaggtttttcatctattcctcgttgagctgctataatatttctccattgttttgcttatcctgtaggaatgaccaaggcttcttgacagccattattaaggttgagtcttattttaccacatcgcttttgggtcaaaggacatatgttaagggaaacaatgtcaaaatttcgatcgaaagggataggtattcgatgcttgcgctagttgacgatgtaggggaaaattttaactgggggccaaatcaATacatcagcttttggaaaatgggtgatgtgtcaactcagagtaaagtagagataaccacagattcacaattgctagattggttggataagggtaatcagcacggggttgtcaatattcatgccattgtcaatgattttggtggtccattgcaagttgaaccttcaccaactaaaagaaggtgccacccatctgtgaggtattctattccatgtactccaccactatttactgacctattggttgatgctacgccactaacactgcctgagagttacaaccatctcgagaactccatccaaccagtaccatccacccaaaatgagagcaccacccatccggagagcacttcacatcctgatgatgaagccacatcccctattaaaaagagtgcaaagaaggttgtaaaaaagtgtgcaaagaggaggagccaagccgatgacgatgatgaagaggttcgggatgatgagaaggaagaacgaagaggaggagccccagctatgcccaaattgtgacccactagaggttgatagtgatagcatatgatagtgatgcagcctcctctgactctgaatatgattgtgatgatcttgatgaccaaatacatgatgacgatgacaatgactctgaccttgagcatgtgtttgcATatgattttgataacctatgtattgatgaaggagaggtgttcgcagatactactacttgcaaggaagctgttacacaccatgctataatccatgactattcttttgaaactgagaaaaaggacaagcagagattcagagctttttgcaagaaaaaagagcagggttgtaaatggaggtttcatgcctctacaagtaagaaatactatggctgcaaggtaaatttgtgctgaaatgttcagttaattattttatcatttcatggttaaatttgatgcataaaaagctgataattacattgttatatgtgcaggtcaaggtaaataggcctgcccacaattgttgttccataaataagactggggctgccatggcaacaaatagctgggttgctgaaagagttatagattggctgaaggagactccaactctaggagctagtgcattgaaggtcaagctagagaagaagtacaaatttacaataggatatgacAaagtttttagaggcaaagagaaggctcttgagaagatatttgggaagtgggaagacagctttgcattgctgcccttttagagaggagcttttgaaggcacaacctggaagtattgtcgatattgataccgagattcatgaagaccaagtatgcttcaggcggctgttcatagctctgaaaccttgcattgatggcttcctacaaggttgtaggccatatattgcaatggactcaacacacttgacagggaagcatagaggacagctggcagctgctgttgcaatagatggaaacaactggctttttcctgttgcatttggtgtgatagaagctgagacaacggagagttggacatggttcgtgcaaaacttgaagaatgctattggtaatcctcctgggctagccatcagcacagatgctgggaaaggactagagagagctgttagtgatgtctatccaactgctgagcaccgggagtgcatgcgacacctgtggaagaacttcaagaaaccatggaccactttttggtgaaaacatgtggcctgctgctaagtgctacaccagccagcagtacaactatcacatgaacaagattgctgagaaatctcctgaagctattgcatatttaaaaaccaatcacccattttttggagtaggagcaaattctcagagctttcaaaggtggactacatcaacaacaatctttctgagtcattcaacaattgggtgatgaagatcaaggaattacacatagtggacttatttgacacacttaggcaaatgataattgacaaatttcacttgaggagccaacttgcaagcaaaatggaaggaagaataattccatctattattaagacactgaatgaacagagcaagaatctaaaagattacaatgtggtaaggagtaattgcgatgatttagctgaagtttctgtggtgtccaacaagggagtggtatggaggcatgcagtgaacctaaaggctcatacatgctcttgtagagcctggcaagtaagtgggaaaccttgtaaccatgcattggcattcataggctctctaaggtttcctgacatgaatggctatgtggatgagtgctattcagtgcaaagattgaggcaaacatatgctgggatatggaacccaatgacatcaaagaatatgtggacatttgtagatcctggtttcaaattgatgaggccaaagttgaggagaaagcctggaaggcctaggacacacaggattaaagcttcagatgagtctggctgtagaaagaagaggacatgccctgaatgtggtgacaaaggccactttgcAaagacatgtcagggaggacctatagctagcaaaaggtacttgtcatctttttttttcctttcatttgtaaattggctgctcactccagattttatacaggaaaaggtcatcttcatcaacaccatcctcagatcaaggaagcaatactcctggtgcaacacctaggtcaaacaaaaaaaatactactggatcatccatgtaattagtatttcttactagttaattccatcctcatttgcaatctatttgcatcttgtattcagatttaggtactgacttatagaattgttgttgcagtggcaatgcaaatgatgtgtcaacaagaccaccaagagcaagagggaaggggaaggagaagaaaggttctgttgcggcatccatttga
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CDS seq | atggaaaggaatgaccaaggcttcttgacagccattattaaggttgagtcttattttaccacatcgcttttgggtcaaaggacatatgttaagggaaacaatgtcaaaatttcgatcgaaagggataggtattcgatgcttgcgctagttgacgatgtaggggaaaattttaactgggggccaaatcaATacatcagcttttggaaaatgggtgatgtgtcaactcagagtaaagtagagataaccacagattcacaattgctagattggttggataagggtaatcagcacggggttgtcaatattcatgccattgtcaatgattttggtggtccattgcaagttgaaccttcaccaactaaaagaaggtgccacccatctgtgaggtattctattccatgtactccaccactatttactgacctattggttgatgctacgccactaacactgcctgagagttacaaccatctcgagaactccatccaaccagtaccatccacccaaaatgagagcaccacccatccggagagcacttcacatcctgatgatgaagccacatcccctattaaaaagagtgcaaagaaggttgtaaaaaatggcaatgcaaatgatgtgtcaacaagaccaccaagagcaagagggaaggggaaggagaagaaaggttctgttgcggcatccatttga
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Protein seq | MERNDQGFLTAIIKVESYFTTSLLGQRTYVKGNNVKISIERDRYSMLALVDDVGENFNWGPNQYISFWKMGDVSTQSKVEITTDSQLLDWLDKGNQHGVVNIHAIVNDFGGPLQVEPSPTKRRCHPSVRYSIPCTPPLFTDLLVDATPLTLPESYNHLENSIQPVPSTQNESTTHPESTSHPDDEATSPIKKSAKKVVKNGNANDVSTRPPRARGKGKEKKGSVAASI |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNaBo_01g0042880 | OsNaBo_01g0042880.01 | Chr01 | 39673767 | 39677341 | + | NAM | ||
CDS seq | atggaaaggaatgaccaaggcttcttgacagccattattaaggttgagtcttattttaccacatcgcttttgggtcaaaggacatatgttaagggaaacaatgtcaaaatttcgatcgaaagggataggtattcgatgcttgcgctagttgacgatgtaggggaaaattttaactgggggccaaatcaATacatcagcttttggaaaatgggtgatgtgtcaactcagagtaaagtagagataaccacagattcacaattgctagattggttggataagggtaatcagcacggggttgtcaatattcatgccattgtcaatgattttggtggtccattgcaagttgaaccttcaccaactaaaagaaggtgccacccatctgtgaggtattctattccatgtactccaccactatttactgacctattggttgatgctacgccactaacactgcctgagagttacaaccatctcgagaactccatccaaccagtaccatccacccaaaatgagagcaccacccatccggagagcacttcacatcctgatgatgaagccacatcccctattaaaaagagtgcaaagaaggttgtaaaaaatggcaatgcaaatgatgtgtcaacaagaccaccaagagcaagagggaaggggaaggagaagaaaggttctgttgcggcatccatttga
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Protein seq | MERNDQGFLTAIIKVESYFTTSLLGQRTYVKGNNVKISIERDRYSMLALVDDVGENFNWGPNQYISFWKMGDVSTQSKVEITTDSQLLDWLDKGNQHGVVNIHAIVNDFGGPLQVEPSPTKRRCHPSVRYSIPCTPPLFTDLLVDATPLTLPESYNHLENSIQPVPSTQNESTTHPESTSHPDDEATSPIKKSAKKVVKNGNANDVSTRPPRARGKGKEKKGSVAASI
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0248900 | SBH | 3.477760 | 3.688490 | 3.808002 |
Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | RAP-db | Os07g0248900 | SBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0008960 | SBH | 0.000000 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016100 | RBH | 0.000000 | 0.0 | 0.795451 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047740 | RBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015800 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0033150 | SBH | 0.000000 | 0.000000 | 0.000000 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0567700 | RBH | 0.0046295 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033150 | SBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000240 | SBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000240 | RBH | 0.0 | 0.0 | 0.0 |