Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_01g0042880 OGI:01102940 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr01:39673767-39677341
Gene Symbol -
DNA seq

atggaaaggtatataatctatacttatgcttgtgacctacttgttctatctatcatgtagggatgttaccaacaatatgtgtgtgttttgaggaattctttttgaatgtttttaatccttgttcaactggttcaagagtccgaatttgctggtttgctatgcaaccttagcatgtgcatagctaaccatatcttgcttgcgtatcttcaggatataatcaagcattagcaatatctctttgtgtgaatatgctgtgcattgtaattaaacaacggcctctccaccttaggtgcttatttgaattaatagatagtgagtttaataaattacatcaaacaatggtagcatgaagtaatataagaaagtagccatatgtttacaactttgttaaaagtagtttaagctggatatgtttttacattggtatgatatttctgttagataggtcttccatgcattagttattcagtccctgtatatttagatgtaggtttttcatctattcctcgttgagctgctataatatttctccattgttttgcttatcctgtaggaatgaccaaggcttcttgacagccattattaaggttgagtcttattttaccacatcgcttttgggtcaaaggacatatgttaagggaaacaatgtcaaaatttcgatcgaaagggataggtattcgatgcttgcgctagttgacgatgtaggggaaaattttaactgggggccaaatcaATacatcagcttttggaaaatgggtgatgtgtcaactcagagtaaagtagagataaccacagattcacaattgctagattggttggataagggtaatcagcacggggttgtcaatattcatgccattgtcaatgattttggtggtccattgcaagttgaaccttcaccaactaaaagaaggtgccacccatctgtgaggtattctattccatgtactccaccactatttactgacctattggttgatgctacgccactaacactgcctgagagttacaaccatctcgagaactccatccaaccagtaccatccacccaaaatgagagcaccacccatccggagagcacttcacatcctgatgatgaagccacatcccctattaaaaagagtgcaaagaaggttgtaaaaaagtgtgcaaagaggaggagccaagccgatgacgatgatgaagaggttcgggatgatgagaaggaagaacgaagaggaggagccccagctatgcccaaattgtgacccactagaggttgatagtgatagcatatgatagtgatgcagcctcctctgactctgaatatgattgtgatgatcttgatgaccaaatacatgatgacgatgacaatgactctgaccttgagcatgtgtttgcATatgattttgataacctatgtattgatgaaggagaggtgttcgcagatactactacttgcaaggaagctgttacacaccatgctataatccatgactattcttttgaaactgagaaaaaggacaagcagagattcagagctttttgcaagaaaaaagagcagggttgtaaatggaggtttcatgcctctacaagtaagaaatactatggctgcaaggtaaatttgtgctgaaatgttcagttaattattttatcatttcatggttaaatttgatgcataaaaagctgataattacattgttatatgtgcaggtcaaggtaaataggcctgcccacaattgttgttccataaataagactggggctgccatggcaacaaatagctgggttgctgaaagagttatagattggctgaaggagactccaactctaggagctagtgcattgaaggtcaagctagagaagaagtacaaatttacaataggatatgacAaagtttttagaggcaaagagaaggctcttgagaagatatttgggaagtgggaagacagctttgcattgctgcccttttagagaggagcttttgaaggcacaacctggaagtattgtcgatattgataccgagattcatgaagaccaagtatgcttcaggcggctgttcatagctctgaaaccttgcattgatggcttcctacaaggttgtaggccatatattgcaatggactcaacacacttgacagggaagcatagaggacagctggcagctgctgttgcaatagatggaaacaactggctttttcctgttgcatttggtgtgatagaagctgagacaacggagagttggacatggttcgtgcaaaacttgaagaatgctattggtaatcctcctgggctagccatcagcacagatgctgggaaaggactagagagagctgttagtgatgtctatccaactgctgagcaccgggagtgcatgcgacacctgtggaagaacttcaagaaaccatggaccactttttggtgaaaacatgtggcctgctgctaagtgctacaccagccagcagtacaactatcacatgaacaagattgctgagaaatctcctgaagctattgcatatttaaaaaccaatcacccattttttggagtaggagcaaattctcagagctttcaaaggtggactacatcaacaacaatctttctgagtcattcaacaattgggtgatgaagatcaaggaattacacatagtggacttatttgacacacttaggcaaatgataattgacaaatttcacttgaggagccaacttgcaagcaaaatggaaggaagaataattccatctattattaagacactgaatgaacagagcaagaatctaaaagattacaatgtggtaaggagtaattgcgatgatttagctgaagtttctgtggtgtccaacaagggagtggtatggaggcatgcagtgaacctaaaggctcatacatgctcttgtagagcctggcaagtaagtgggaaaccttgtaaccatgcattggcattcataggctctctaaggtttcctgacatgaatggctatgtggatgagtgctattcagtgcaaagattgaggcaaacatatgctgggatatggaacccaatgacatcaaagaatatgtggacatttgtagatcctggtttcaaattgatgaggccaaagttgaggagaaagcctggaaggcctaggacacacaggattaaagcttcagatgagtctggctgtagaaagaagaggacatgccctgaatgtggtgacaaaggccactttgcAaagacatgtcagggaggacctatagctagcaaaaggtacttgtcatctttttttttcctttcatttgtaaattggctgctcactccagattttatacaggaaaaggtcatcttcatcaacaccatcctcagatcaaggaagcaatactcctggtgcaacacctaggtcaaacaaaaaaaatactactggatcatccatgtaattagtatttcttactagttaattccatcctcatttgcaatctatttgcatcttgtattcagatttaggtactgacttatagaattgttgttgcagtggcaatgcaaatgatgtgtcaacaagaccaccaagagcaagagggaaggggaaggagaagaaaggttctgttgcggcatccatttga

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CDS seq

atggaaaggaatgaccaaggcttcttgacagccattattaaggttgagtcttattttaccacatcgcttttgggtcaaaggacatatgttaagggaaacaatgtcaaaatttcgatcgaaagggataggtattcgatgcttgcgctagttgacgatgtaggggaaaattttaactgggggccaaatcaATacatcagcttttggaaaatgggtgatgtgtcaactcagagtaaagtagagataaccacagattcacaattgctagattggttggataagggtaatcagcacggggttgtcaatattcatgccattgtcaatgattttggtggtccattgcaagttgaaccttcaccaactaaaagaaggtgccacccatctgtgaggtattctattccatgtactccaccactatttactgacctattggttgatgctacgccactaacactgcctgagagttacaaccatctcgagaactccatccaaccagtaccatccacccaaaatgagagcaccacccatccggagagcacttcacatcctgatgatgaagccacatcccctattaaaaagagtgcaaagaaggttgtaaaaaatggcaatgcaaatgatgtgtcaacaagaccaccaagagcaagagggaaggggaaggagaagaaaggttctgttgcggcatccatttga

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Protein seq

MERNDQGFLTAIIKVESYFTTSLLGQRTYVKGNNVKISIERDRYSMLALVDDVGENFNWGPNQYISFWKMGDVSTQSKVEITTDSQLLDWLDKGNQHGVVNIHAIVNDFGGPLQVEPSPTKRRCHPSVRYSIPCTPPLFTDLLVDATPLTLPESYNHLENSIQPVPSTQNESTTHPESTSHPDDEATSPIKKSAKKVVKNGNANDVSTRPPRARGKGKEKKGSVAASI

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_01g0042880 OsNaBo_01g0042880.01 Chr01 39673767 39677341 + NAM
CDS seq

atggaaaggaatgaccaaggcttcttgacagccattattaaggttgagtcttattttaccacatcgcttttgggtcaaaggacatatgttaagggaaacaatgtcaaaatttcgatcgaaagggataggtattcgatgcttgcgctagttgacgatgtaggggaaaattttaactgggggccaaatcaATacatcagcttttggaaaatgggtgatgtgtcaactcagagtaaagtagagataaccacagattcacaattgctagattggttggataagggtaatcagcacggggttgtcaatattcatgccattgtcaatgattttggtggtccattgcaagttgaaccttcaccaactaaaagaaggtgccacccatctgtgaggtattctattccatgtactccaccactatttactgacctattggttgatgctacgccactaacactgcctgagagttacaaccatctcgagaactccatccaaccagtaccatccacccaaaatgagagcaccacccatccggagagcacttcacatcctgatgatgaagccacatcccctattaaaaagagtgcaaagaaggttgtaaaaaatggcaatgcaaatgatgtgtcaacaagaccaccaagagcaagagggaaggggaaggagaagaaaggttctgttgcggcatccatttga

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Protein seq

MERNDQGFLTAIIKVESYFTTSLLGQRTYVKGNNVKISIERDRYSMLALVDDVGENFNWGPNQYISFWKMGDVSTQSKVEITTDSQLLDWLDKGNQHGVVNIHAIVNDFGGPLQVEPSPTKRRCHPSVRYSIPCTPPLFTDLLVDATPLTLPESYNHLENSIQPVPSTQNESTTHPESTSHPDDEATSPIKKSAKKVVKNGNANDVSTRPPRARGKGKEKKGSVAASI

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0248900 SBH 3.477760 3.688490 3.808002
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os07g0248900 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0008960 SBH 0.000000 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0016100 RBH 0.000000 0.0 0.795451
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0047740 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0015800 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0033150 SBH 0.000000 0.000000 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0567700 RBH 0.0046295 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU NA NA NA NA NA
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0033150 SBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G000240 SBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_08g0000240 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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