Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0248900 | OGI:01102940 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:8275770-8278961 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGGAGATTATGGATACCCCATATCTACATGGCAGTTATATTCCAGCTGGATACAGGGTACTGAATATAGATAGAATATCTTTATGAGAACTCGGGTTAGATTATAAACTTGTGTGTCAAGGAAATACCCGGGATCCTACTCGGTTACGATTGTATTTTATCTGTAATCCCATATTCCGTTAGGATATGGACTGTATTTTGTAAAGCGGACCTCTTCCCCTATATAAGGAGGGGTCCGTGTGCCTCTTGGGGCGGGATCTTTTTTCCAGTTTATACAATCAATAATACACTCGGCGGAATCATCCCCGGACAGGAGTAGGGTATTACTTCTTAAATAAGAAGGCCTGAACCTGTATAAAATTCCTTGTCTCTAAACTCATCCACTTTCCTAGATTGATAGCCACCCCCTTTAATAACAATAACCTACCTTTAGCATATATTAAACCAAGGAGTATATGACAAACATGTATGGTGGATAATACTAGTTATAAATCTTGACCTCATATAATTATAGTTCAACTGTAAGTTAGGATTGTTCATTAAGGGATAATCTGTAACCATAATATGATTAACCTAAACAATTCTAACATACAAAGCATGGATAATTATTAACCTTTTCTAATTTATTGTGACAAGTAAAATATTTTCATAATTAAAGCAAAGCCTCCATCAATAAAATAATAATACAAATGGTTCCCTGCGATTAATTGCTTGATCCCAAATCCATCTAACAACAGAACCTCTGGTATGTAACCGTGCTATTTAGATAGATGCATATATAGCCATAATCCTTCCATAGCCATTTGATAGAATAAATCGCTGATTAGCCCACGTCTTTCGACGTATGCAGTTGTCATTTCGACAACACTCTGCTTGTCCTTTTTCTCAGTTTCAAAAGAATAGTCATGGATTATAGCATGGTGTGTAACAGCTTCCTTGCAAGTAGTAGTATCTGCGAACACCTCTCCTTCATCAATACATGGGTTATCAAAATCATATGCAAACACATGCTCAAGGTCAGAGTCATTGTCATCGTCATCATGTATTTGGTCATCAAGATCATCACAATCATATTCAGAGTCAGAGGAGGCTGCTGCATCACTATCATAGCTGCTATCACTATCAACCTCTAGTGGGTCACAATTTGGGCATAGCTGGGGCTCCTCCTCTTCGTTCTCTTCCTTCTCATCATCCCAAACCTCTTCATCATCGTCATCGTCTTGGCTCCTCCTCTTTGCACACTTTTTTACAACCTTCTTTGCACTCTTTTTAATAGGGGATGTGGCTTCATCATCAGGATGTGAAGTGCTCTCCGGATGGGTGGTGCTCTCATTTTGGGTGGATGGTACTGGTTGGATGGAGTTCTCAAGATGGTTGTAACTCTCAGGCAGTGTTAGTGGCGTAGCATCAACCAATAGGTCAGTAAATAGTGGTGGAGTACATGGAATAGAATACCTCACAGATGGGTGGCACCTTCTTTTAGTTGGTGAAGGTTCAACTTGCAATGGACCACCAAAATCATTGACAATGGCATGAATATTGACAACCCCGTGCTGATTACCCTTATCCAACCAATCTAGCAATTGTGAATCTGTGGTTATCTCTACTTTACTCTGAGTTGACACATCACCCAATTTCCAAAAGCCGATGTATTGATTTGGCCCCCAGTTAAAATTTTCCCCTACATCGTCAACTAGCGCAAGCATCGAATACCTATCCCTTTCGATAGAAATTTTGACATTGTTTCCCTTAACATATGTCCTTTGACCCAAAAGCGATGTGGTAAAATAAGACTCAACCTTAATAATGGCTGTCAAGAAGCCTTGGTCATTCCTACAGGATAAGCAAAACAATGGAGAAATATTCTAGCAGCTCAACGAGGAATAGATGAAAACCTACATCTAAATATACAGGGACTGAATAACTAATGCATGGAAGACCTATCTAACAGAAATATCATATGATTTTAAATGGATTGTACAGTATATGTGATTTAAGTGGGTTGACAAGTGATTTTACTCTTTGAGTAATTATTGGATGCTAACCGACTCAACCTTATTTGGGTGGTTCTATCATAACAATTCTGTACCTATTCCTCATAAATAAATTAAAGACTCATCTATCTGTATTCATGTTTGATTTACCTAATTATAAGGCTAACTTTATTATTTAAATAATCTATAAGTCATGGGGTTTAATTATACAACCATTTAATAGTACTAGTATCTTCCTATACATTAATTTGAGACATCATTTAAAATTAGTTTGTGTGGTTGTTACATTGACAAAGCATGTTAGAGACAAATATTCTTACATCTACCTTACTGTAAAGTACTAAACATATCCAGCTTAAACTACTTTTAACAAGGTTGTAAACATATGGCTACTTTCTTATATTACTTCATGCTACCATTGTTTGATGATTAATTTATTAAACTCACTATCTATTAATTCAAATCAGCACCTAAGGTAGAGAGGCCGTTGTTTAATTACAATGCACAACATATTCACACAAAGAGATATTGCTAATGCTTGATTATATCCTGAAGATACGCAAGCAAGATATGGTTAGCTATGCACATGCTAAGGTTGCATAGCAAACCAGCAAATTCGGACTCTTGAACCAGTTGAACAAGGATTAAAAATATTCAAAAAGAATTCCTCAAAACACACACATATATTGTTGGTAACATCCCTACACGATAGATAGAACAAGCAGGTCACAAGCATAAGTATAGATTATATACCTTTCCATGGTGGTCCTGCTACTACTGCCCACAGTAGCCACCATGCCGCTTGAAGCAGCTGACGCTGCAGCCTACCGTCGACGCCGACACCCGCTGCAGCCACGTGCCGCGGCCGCGCGCCGCAACTTGACGCCGCTCGACGGAGCCACCGCAAGCGTGGTAGCCGCGCCGTAGCCTGACGCCGCCCGCTGCAGGTGCCGCCCCAAGCCGCCGCAAGCACCGTAACCTGATGCCGCCCGCTGCAGCCGTCGCCCCAAGCTGTTGCTTGCCTTGCTCTACTCGCCGAAATCCATCTGCACCTCTTCCATTGGCATCTAATACTTCAAAGCTACCGATTTTTGGTTGATTTGCTCCTGATTTGAGAGAAGGGATGAGAGGATTTGGGGTTTAGGGTTCGTCGTGCGAGAGGAGAGGAGGAGTTCTGATGCGGTAGAGTTGGGGAAGAA
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| CDS seq | AATATTTCTCCATTGTTTTGCTTATCCTGTAGGAATGACCAAGGCTTCTTGACAGCCATTATTAAGGTTGAGTCTTATTTTACCACATCGCTTTTGGGTCAAAGGACATATGTTAAGGGAAACAATGTCAAAATTTCTATCGAAAGGGATAGGTATTCGATGCTTGCGCTAGTTGACGATGTAGGGGAAAATTTTAACTGGGGGCCAAATCAATACATCGGCTTTTGGAAATTGGGTGATGTGTCAACTCAGAGTAAAGTAGAGATAACCACAGATTCACAATTGCTAGATTGGTTGGATAAGGGTAATCAGCACGGGGTTGTCAATATTCATGCCATTGTCAATGATTTTGGTGGTCCATTGCAAGTTGAACCTTCACCAACTAAAAGAAGGTGCCACCCATCTGTGAGGTATTCTATTCCATGTACTCCACCACTATTTACTGACCTATTGGTTGATGCTACGCCACTAACACTGCCTGAGAGTTACAACCATCTTGAGAACTCCATCCAACCAGTACCATCCACCCAAAATGAGAGCACCACCCATCCGGAGAGCACTTCACATCCTGATGATGAAGCCACATCCCCTATTAAAAAGAGTGCAAAGAAGGTTGTAAAAAAGTGTGCAAAGAGGAGGAGCCAAGACGATGACGATGATGAAGAGGTTTGGGATGATGAGAAGGAAGAGAACGAAGAGGAGGAGCCCCAGCTATGCCCAAATTGTGACCCACTAGAGGTTGATAGTGATAGCAGCTATGATAGTGATGCAGCAGCCTCCTCTGACTCTGAATATGATTGTGATGATCTTGATGACCAAATACATGATGACGATGACAATGACTCTGACCTTGAGCATGTGTTTGCATATGATTTTGATAACCCATGTATTGATGAAGGAGAGGTGTTCGCAGATACTACTACTTGCAAGGAAGCTGTTACACACCATGCTATAATCCATGACTATTCTTTTGAAACTGAGAAAAAGGACAAGCAGAGTGTTGTCGAAATGACAACTGCATACGTCGAAAGACGTGGGCTAATCAGCGATTTATTCTATCAAATGGCTATGGAAGGATTATGGCTATATATGCATCTATCTAAATAG
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| Protein seq | NISPLFCLSCRNDQGFLTAIIKVESYFTTSLLGQRTYVKGNNVKISIERDRYSMLALVDDVGENFNWGPNQYIGFWKLGDVSTQSKVEITTDSQLLDWLDKGNQHGVVNIHAIVNDFGGPLQVEPSPTKRRCHPSVRYSIPCTPPLFTDLLVDATPLTLPESYNHLENSIQPVPSTQNESTTHPESTSHPDDEATSPIKKSAKKVVKKCAKRRSQDDDDDEEVWDDEKEENEEEEPQLCPNCDPLEVDSDSSYDSDAAASSDSEYDCDDLDDQIHDDDDNDSDLEHVFAYDFDNPCIDEGEVFADTTTCKEAVTHHAIIHDYSFETEKKDKQSVVEMTTAYVERRGLISDLFYQMAMEGLWLYMHLSK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0248900 | Os07t0248900-01 | Chr07 | 8275770 | 8278961 | - | irgsp1_rep | ||
| CDS seq | AATATTTCTCCATTGTTTTGCTTATCCTGTAGGAATGACCAAGGCTTCTTGACAGCCATTATTAAGGTTGAGTCTTATTTTACCACATCGCTTTTGGGTCAAAGGACATATGTTAAGGGAAACAATGTCAAAATTTCTATCGAAAGGGATAGGTATTCGATGCTTGCGCTAGTTGACGATGTAGGGGAAAATTTTAACTGGGGGCCAAATCAATACATCGGCTTTTGGAAATTGGGTGATGTGTCAACTCAGAGTAAAGTAGAGATAACCACAGATTCACAATTGCTAGATTGGTTGGATAAGGGTAATCAGCACGGGGTTGTCAATATTCATGCCATTGTCAATGATTTTGGTGGTCCATTGCAAGTTGAACCTTCACCAACTAAAAGAAGGTGCCACCCATCTGTGAGGTATTCTATTCCATGTACTCCACCACTATTTACTGACCTATTGGTTGATGCTACGCCACTAACACTGCCTGAGAGTTACAACCATCTTGAGAACTCCATCCAACCAGTACCATCCACCCAAAATGAGAGCACCACCCATCCGGAGAGCACTTCACATCCTGATGATGAAGCCACATCCCCTATTAAAAAGAGTGCAAAGAAGGTTGTAAAAAAGTGTGCAAAGAGGAGGAGCCAAGACGATGACGATGATGAAGAGGTTTGGGATGATGAGAAGGAAGAGAACGAAGAGGAGGAGCCCCAGCTATGCCCAAATTGTGACCCACTAGAGGTTGATAGTGATAGCAGCTATGATAGTGATGCAGCAGCCTCCTCTGACTCTGAATATGATTGTGATGATCTTGATGACCAAATACATGATGACGATGACAATGACTCTGACCTTGAGCATGTGTTTGCATATGATTTTGATAACCCATGTATTGATGAAGGAGAGGTGTTCGCAGATACTACTACTTGCAAGGAAGCTGTTACACACCATGCTATAATCCATGACTATTCTTTTGAAACTGAGAAAAAGGACAAGCAGAGTGTTGTCGAAATGACAACTGCATACGTCGAAAGACGTGGGCTAATCAGCGATTTATTCTATCAAATGGCTATGGAAGGATTATGGCTATATATGCATCTATCTAAATAG
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| Protein seq | NISPLFCLSCRNDQGFLTAIIKVESYFTTSLLGQRTYVKGNNVKISIERDRYSMLALVDDVGENFNWGPNQYIGFWKLGDVSTQSKVEITTDSQLLDWLDKGNQHGVVNIHAIVNDFGGPLQVEPSPTKRRCHPSVRYSIPCTPPLFTDLLVDATPLTLPESYNHLENSIQPVPSTQNESTTHPESTSHPDDEATSPIKKSAKKVVKKCAKRRSQDDDDDEEVWDDEKEENEEEEPQLCPNCDPLEVDSDSSYDSDAAASSDSEYDCDDLDDQIHDDDDNDSDLEHVFAYDFDNPCIDEGEVFADTTTCKEAVTHHAIIHDYSFETEKKDKQSVVEMTTAYVERRGLISDLFYQMAMEGLWLYMHLSK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0248900 | RBH | 3.477760 | 3.688490 | 3.808002 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0008960 | SBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016100 | SBH | 0.000000 | 0.0 | 0.795451 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0008950 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0008700 | SBH | 0.024185 | 0.257277 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0033150 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0144500 | RBH | 0.0120695 | 0.2675805 | 0.020899 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033150 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G008870 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000240 | RBH | 0.0 | 0.0 | 0.0 |
