Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0047740 | OGI:01102940 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:43438851-43442444 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaaatggatgccgcaacagaacctttcttctccttccccttccctcttgctcttggtggtcttgttgacacatcatttgcattgccactgcaacaacaattctataagtcagtacctaaatctgaatacaagatgcaaatagattgcaaatgaggatggaattaactagtaagaaatactaattacatggatgatccagtagtattttttttgtttgacctaggtgttgcaccaggagtattgcttccttgatctgaggatggtgttgatgaagatgaccttttcctgtataaaatctggagtgagcagccaatttacaaatgaaaggaaaaaaaaagatgacaagtaccttttgctagctataggtcctccctgacatgtctttgcaaagtggcctttgtcaccacattcagggcatgtcctcttctttctacagccagactcatctgaagctttaatcctgtgtgtcctaggccttccaggctttctcctcaactttggcctcatcaatttgaaaccaggatctacaaatgtccacatattctttgatgtcattgggttccatatcccagcatatgtttgcctcaatctttgcactgaatagcactcatccacatagccattcatgtcaggaaaccttagagagcctatgaatgccaatgcatggttacaaggtttcccacttacttgccaggctctacaagagcatgtatgagcctttaggttcactgcatgcctccataccactcccttattggacaccacagaaacttcagctaaatcatcgcaattactccttaccacattgtaatcttttagattcttgctctgttcattcagtgtcttaataatagatggaattattcttccttccattttgcttgcaagttggctcctcaagtgaaatttgtcaattatcatttgcctaagtgtgtcaaataagtccactatgtgtaattccttgatcttcatcacccaattgttgaatgactcagaaagattgttgttgatgtagtccacctttgaaagctctgagaatttgctcctactccaaaaaaatgggtgattggtttttaaatatgcaatagcttcaggagatttctcagcaatcttgttcatgtgatagttgtactgctggctggtgtagcacttagcagcaggccacatgttttcaccaaaaagtggtccatggtactgcttcttgaagttcttccacaggtgtcgcatgcactctcggtgctcagcagttggatagacatcactaacagctctctctagtcctttcccagcatctgtgctgatggctagcccaggaggattaccaatagcattcttcaagttctgcacgaaccatgtccaactctccgttgtctcagcttctatcacaccaaatgcaacaggaaaaagccagttgtttccatctattgcaacagcagctgccagctgtcctctatgcttccctgtcaagtgtgttgagtccattgcaatatatggcctacaaccttgtaggaagccatcaatgcaaggtttcagagctatgaacagccgcctgaagcatacttggtcttcatgaatctcggtatcaatatcgacaatacttccaggttgtgccttcaaaagctcctctctaaaagtgggcagcaatgcaaagctgtcttcccacttcccaaatatcttctcaagggccttctctttgcctctaaaaactttgtcatatcctattgtaaatttgtacttcttctctagcttgaccttcaatgcactagctcctagagttggagtctccttcagccaatctataactctttcagcaacccagctatttgttgccatggcagccccagtcttatttatggaacaacaattgtgggcaggcctatttaccttgacctgcacatataacaatgtaattatcagctttttatgcatcaaatttaaccatgaaatgataaaataattaactgaacatttcagcacaaatttaccttgcagccatagtatttcttacttgtagaggcatgaaacctccatttacaaccctgctcttttttcttgcaaaaagctctgaatctatgcttgtcctttttctcagtttcaaaagaatagtcatagattatagcatggtgtgtaacagcttccttgcaagtagtagtatttgcgaacacctctccttcatcaatacatgggttatcaaaatcatatgcaaacacatgctcaaggtcagagtcattgtcatcgtcatcatgtatttggtcatcaagatcatcacaatcatattcagagtcagaggaggctgctgcatcactatcatagctgctttcactatcaacctctagtgggtcacaatttgggcatagctggggctcctcctcttcgttctcttccttctcatcatcccgaacctcttcatcatcgtcatcggcttggctcctcctctttgcacacttttttacaaccttctttgcactctttttaataggggatgtggcttcatcatcaggatgtgaagtgctctccggatgggtggtgctctcattttgggtggatggtactggttggatggagttctcaagatggttgtaactctcaggcagtgttagtggcgtagcatcaaccaataggtcagtaaatagtggtggagtacatggaatagaatacctcacagatgggtggcaccttcttttagttggtgaaggttcaacttgcaatggaccaccaaaatcattgacaatggcatgaatattgacaaccccgtgctgattacccttatccaaccaatctagcaattgtgaatctgtggttatctctactttactctgagttgacacatcacccaatttccaaaagctgatgtattgatttggcccccagttaaaattttcccctacatcgtcaactagcgcaagcatcgaatacctatccctttcgatcgaaattttgacattgtttcccttaacatatgtcctttgactcaaaagcgatgtggtaaaataagactcaaccttaataatggctgtcaagaagccttggtcattcctacaggataagtaaaacaatggagaaatattctagcagctcaacgaggaatagatgaaaaacctacatctaaatatacagggactgaataactaatgcatggaagacctatctaacagaaatatcataccaatgtaaaaacatatccagcttaaactacttttaacaaagttgtaaacatatggctactttcttatattacttcatgctaccattgtttgatgattaatttattaaactcactatctattaattcaaataagcacctaaggtggagaggccgttgtttaattacaatgcacagcatattcacacaaagagatattgctaatgcttgattatatcctgaagatacgcaagcaagatatggttagctatgcacatgctaaggttgcatagcaaaccagcaaattcggactcttgaaccagttgaacaaggattaaaaacattcaaaaagaattcctcaaaacacacacatatattgttggtaacatccctacatgatagatagaacaagtaggtcacaagcataagtatagattatatacctttccat
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| CDS seq | atggaaaggaatgaccaaggcttcttgacagccattattaaggttgagtcttattttaccacatcgcttttgagtcaaaggacatatgttaagggaaacaatgtcaaaatttcgatcgaaagggataggtattcgatgcttgcgctagttgacgatgtaggggaaaattttaactgggggccaaatcaatacatcagcttttggaaattgggtgatgtgtcaactcagagtaaagtagagataaccacagattcacaattgctagattggttggataagggtaatcagcacggggttgtcaatattcatgccattgtcaatgattttggtggtccattgcaagttgaaccttcaccaactaaaagaaggtgccacccatctgtgaggtattctattccatgtactccaccactatttactgacctattggttgatgctacgccactaacactgcctgagagttacaaccatcttgagaactccatccaaccagtaccatccacccaaaatgagagcaccacccatccggagagcacttcacatcctgatgatgaagccacatcccctattaaaaagagtgcaaagaaggttgtaaaaaatggcaatgcaaatgatgtgtcaacaagaccaccaagagcaagagggaaggggaaggagaagaaaggttctgttgcggcatccatttga
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| Protein seq | MERNDQGFLTAIIKVESYFTTSLLSQRTYVKGNNVKISIERDRYSMLALVDDVGENFNWGPNQYISFWKLGDVSTQSKVEITTDSQLLDWLDKGNQHGVVNIHAIVNDFGGPLQVEPSPTKRRCHPSVRYSIPCTPPLFTDLLVDATPLTLPESYNHLENSIQPVPSTQNESTTHPESTSHPDDEATSPIKKSAKKVVKNGNANDVSTRPPRARGKGKEKKGSVAASI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0047740 | OsCMeo_01g0047740.01 | Chr01 | 43438851 | 43442444 | - | NAM | ||
| CDS seq | atggaaaggaatgaccaaggcttcttgacagccattattaaggttgagtcttattttaccacatcgcttttgagtcaaaggacatatgttaagggaaacaatgtcaaaatttcgatcgaaagggataggtattcgatgcttgcgctagttgacgatgtaggggaaaattttaactgggggccaaatcaatacatcagcttttggaaattgggtgatgtgtcaactcagagtaaagtagagataaccacagattcacaattgctagattggttggataagggtaatcagcacggggttgtcaatattcatgccattgtcaatgattttggtggtccattgcaagttgaaccttcaccaactaaaagaaggtgccacccatctgtgaggtattctattccatgtactccaccactatttactgacctattggttgatgctacgccactaacactgcctgagagttacaaccatcttgagaactccatccaaccagtaccatccacccaaaatgagagcaccacccatccggagagcacttcacatcctgatgatgaagccacatcccctattaaaaagagtgcaaagaaggttgtaaaaaatggcaatgcaaatgatgtgtcaacaagaccaccaagagcaagagggaaggggaaggagaagaaaggttctgttgcggcatccatttga
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| Protein seq | MERNDQGFLTAIIKVESYFTTSLLSQRTYVKGNNVKISIERDRYSMLALVDDVGENFNWGPNQYISFWKLGDVSTQSKVEITTDSQLLDWLDKGNQHGVVNIHAIVNDFGGPLQVEPSPTKRRCHPSVRYSIPCTPPLFTDLLVDATPLTLPESYNHLENSIQPVPSTQNESTTHPESTSHPDDEATSPIKKSAKKVVKNGNANDVSTRPPRARGKGKEKKGSVAASI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0248900 | SBH | 3.477760 | 3.688490 | 3.808002 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0248900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0027370 | SBH | 0.434756 | 0.0 | 0.491190 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016100 | SBH | 0.000000 | 0.0 | 0.795451 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0016450 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015800 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0033150 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0567700 | RBH | 0.0046295 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033150 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000240 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0042880 | RBH | 0.0 | 0.0 | 0.0 |
