Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0012460 | OGI:01031140 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:10102654-10103878 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagtgacctaacaggccaggcgtgttatggttatggccatggttcttctgaagtagtgatagaagctagaaatgggccacatacctatttggtcggcaaaaaacaaatatgcatttcgtatcttgtttggtacctttccatcgcagttttatcatcctataagtaaataacatcaagattaaagacatcaaaatattgctcatgtcccgtggattgctaatgttttaaatatttcatgtcattgcacaaataaaaattaatcttaattagttgtatacaacacattcaatgatgcacagtggtgaacccaggggtggtgctagatatgcactggcatacctaaaataacttgaaaaatgttagtaactagaaaaaaaaatgcctgtgcattgtaacgggtgaaggctattttaattttatggaaaaagtacaacgaaggtccctcaacttgtcatcgagttataaaatcgtcctcaaaccgcaaaaccggatacaacgcacacctcaacttagaaaaccagtacaaagtaggtccctcggcggttttaactccggttttgtctgatgtggcagctgactcagcgtgggtccaacgtgtcagcctcttcttCcccctctccacctctcttcctttctcttcttttctctcactgcagcacagccaccgggtggggagatcggcgggggaggcgGGAgtccggcggcgacgacgctgcggacggcgcgcgtggccctcgccttggtgcatgccactcccctcgccgcgtccagccgcaccacccagagcgcggcgacgtcgacgacggcgaaacgtgctgcctcctcgccgtcgccggacgaccggagcgagcggtacgagaggccctcgtagtTGtgcccgccgctgcgcgcgcggacagtgaggccgtggttgcggcagcagacgacgtaggcgcgcacctcgtcggcggtgaccggcgtgagcaccagcgcggggcggggcgtccgcggcgtggcgatttgcactagattagcactgtatgctgaacatagcacaagccaaaaaatacagcaggctaggagcttaccctcagcaacctgagcatccaaacctgatctgtctatgccattgatctcccaatcctgcaaccagaccataacaacatcaattcaggaaagttggaaactccaagcagcatcactaaacatatacgtagctagctctacctcctgctccggcgacat
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| CDS seq | atgtcgccggagcaggaggattgggagatcaatggcatagacagatcaggtttggatgctcaggttgctgaggcatacagtgctaatctagtgcaaatcgccacgccgcggacgccccgccccgcgctggtgctcacgccggtcaccgccgacgaggtgcgcgcctacgtcgtctgctgccgcaaccacggcctcactgtccgcgcgcgcagcggcgggcaCAactacgagggcctctcgtaccgctcgctccggtcgtccggcgacggcgaggaggcagcacgtttcgccgtcgtcgacaagaaccatggccataaccataacacgcctggcctgttaggtcactaa |
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| Protein seq | MSPEQEDWEINGIDRSGLDAQVAEAYSANLVQIATPRTPRPALVLTPVTADEVRAYVVCCRNHGLTVRARSGGHNYEGLSYRSLRSSGDGEEAARFAVVDKNHGHNHNTPGLLGH |
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| Function | Berberine bridge enzyme-like Cyn d 4 [UniProtKB/Swiss-Prot:Q5QJ60] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0012460 | OsNaBo_01g0012460.01 | Chr01 | 10102654 | 10103878 | - | NAM | ||
| CDS seq | atgtcgccggagcaggaggattgggagatcaatggcatagacagatcaggtttggatgctcaggttgctgaggcatacagtgctaatctagtgcaaatcgccacgccgcggacgccccgccccgcgctggtgctcacgccggtcaccgccgacgaggtgcgcgcctacgtcgtctgctgccgcaaccacggcctcactgtccgcgcgcgcagcggcgggcaCAactacgagggcctctcgtaccgctcgctccggtcgtccggcgacggcgaggaggcagcacgtttcgccgtcgtcgacaagaaccatggccataaccataacacgcctggcctgttaggtcactaa
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| Protein seq | MSPEQEDWEINGIDRSGLDAQVAEAYSANLVQIATPRTPRPALVLTPVTADEVRAYVVCCRNHGLTVRARSGGHNYEGLSYRSLRSSGDGEEAARFAVVDKNHGHNHNTPGLLGH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.072654 | 10.249332 | 2.390528 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g18230 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0012970 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0012670 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013000 | RBH | 0.873030 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0012470 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0012580 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0171600 | RBH | 0.4719105 | 0.439985 | 0.1317075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0012510 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0169400 | RBH | 1.264884 | 0.8144695 | 0.154956 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012510 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0012590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0012530 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0012670 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G012650 | RBH | 0.142188 | 0.000000 | 1.445504 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016590 | RBH | 0.0 | 0.0 | 0.0 |
