Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsGoSa_01g0012530 OGI:01031140 | 15/16 GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) Chr01:10415769-10419422
Gene Symbol -
DNA seq

ttagtgacctaacaggccaggcgtgttatggttatggccatggttcttctgaagtagtgatagaagctagaaatgggccacatacctatttggtcggcaaaaaacaaatatgcatttcgtatcttgtttggtacctttccatcgcagttttatcatcctctaagtaaataacatcaagattaaagacatcaaaatattgctcatgtccgtggattgctaatgctttaaatatttcatgtcattgcacaaataaaaattattcttaattagttgtatacaacacattcaatgatgcacagtggtggacccaggggtggtgctagatatgcactggtatacctaaaataacttgaaaaatgttagtaagtggaaaaaaaatgactgtgcattgtaacgggtgaaggctattttaattttatgaaaaagtacaacgaaggtccctcaacttatcatcgagttataaaatcgtcctcaaaccgcaaaaccagatacaacgcatccctcaacttagaaaaccagtacaaagtaggtccctcggcggTtttgactccggttttgtctgatgtggcagctgactcagcgtgggtccaacgtatcagcctcttcttCCccctctccacctctcttcctctctcttcttttctctcactgcagcacagccaccgggtggggaggagatcggtgggggaggcgggagtccggcggcgacgacgctgcggacggcgcgcgtggccctcgccttggtgcatgccactcccctcgccgcgtccagccgcaccacccagagcgcggcgacgtcgacgacggcgaaacgtgctgcctcctcgccgtcgccggacgaccggagcgagcggtacgagaggccctcgtagttgtgcccgccgctgcgcgcgcggacagtgaggccgtggttgcggcagcagacgacgtaggcgcgcacctcgtcggcggtgaccggcgtgagcaccagcgcggggcggggcgtccgcggcgtggtgatttgcactagattagcactgtatgctgaacatatcacaagccaacaaatacagcaggctaggagcttaccctcagcaacctgagcatccaaacctgatctgtctatgccattgatctcccaatcctgcaaccagaccataacaacatcaattcaggaaagttggaaactccaagcagcatcactaaacatatacgtagctagctctacctcctgctccggcgacatggccgtctcgtcatgagcgtagactacgatagcaagcgggccacgccgaggggggcgcgaggcggggcaccagaggaagccgcggctgtcgtctcgccaccgcgcggaacacagcgacgcgagcagcgagaagtggatgagagggaggcgcgagcggcttggctccatgctcgtcttgctcgcggtcgcagccggagctttgctcagcttggccttggcggccgtcttggccttggacctggccgccgtcgccttcttctcctcggcagcctccctcacttaacggcgaactcgtccgcagcgctcgcccgtctctgcttcgccgcccgcagcccggccgccaagggcgtcgtcggcgccaagaggaagaggaccccgcgcccctccgccgccgctaagaagcccgcgtcgtcgtcggcggcggcgtcggccaagtgggcgaagaaggcgcgcggttcccccctcgacccgcccgcgccaagagggcgatgaaggctgccccctgcgaagctgatgcagccgcccaaatccatctgcgcgggcccgccgccgcgctcgctcgccggccgtctccgaatcgccgccggactcccgcctcccccaccggcctcctcccggacctccccacccaccggctcttctgctagcgagaaaagaagaggagagaggaagagaggtggagaggggtgaagaagaggctcacacatgggaagaagaggagagaggaagagaggtggagaggggtgaagaagaggctcacacatgggactcacactgagtcagctgccacgtcagataaaaccggagttaaaaccaccgaaggacctactttatactggttttataagttgagggatacgttgtatctggttgtgtggttcgaggacgattttgtaactcgatgacaagttgagggaccttaggtgtacttttttctaattttattattgctatacggtttagttataggtgatatttactgtgagaattcatttggATatattttttttagaaaatcatgtgttgcggttaggagttcaatcatcttaagttagcatgcaagttaattttttaaagagattttttatacactactcctgtattttcaaaagtgaacgaacttaaaacccgaacccaactcgtacatggatgacgtaccaaagtactggtaaaaatatcttcaatctttataatagttttactgtaagaatttgcttggatatatatttttctagaaaactatgagctgcaattagaagtctgatcatctcaagttagcatgtaagttttttttaaagagatttcttatatgactccttctatatttctaaaagcgcggagcttcatctagttaagactgtttgtatgcaactatgcatgtagtgtttgatttgcctctcttaagaaccactgtgaaaacatcctggataaaaatcttaggtccgccactaatgatgcacatttattctttacataaataaataaaaagatacatgttagaatgttagatgatgattatttgaggaagatctcttgataaaaatgagaggagggagtacctacctatcgcagggaaaagtatatataacatccaattttactactttagagggtttgcacgaagatattatacttcctcagctctgttctctttgccatttggaacattatcgaatttcgcataaactagtacagttccttaataattgtagaaatatttcaccttacatggaagagagaaaagaggagagaggaggcgaggaacaagatgagataaggaggatattggtgacatgggagtctcaactcaacgagtaaaccacggttaacatgctatgttagtaaaaaaagcgcttcttaaatcaacaaaggagtaaatttacatagacttttaaagataggggagacattatacccggttttgtggttgaggagggtaattccatcacgagtaagaatgaggaacgattaatagacttattcgaaccaacctgctgataagaaacagaagaagaaaccaaacggcccggtccgtcagggagcaaaccagcgagcgcctgcaagaaaccggacccgacagtatatgatgggccgaaatctcgtgacagcccggggcccatgtagtgtgtcgccggcttgcgtccgccgccgccgcctgaccgaaagcgacgcagccatggccggagctgctgccgatcgccgccgcgctcccctcccctttccccacattccggcggccggcgcgggcggcgggcccacttctcgctctcggtgagtgctctcctcctcctcctcctcctcccgttccccactgcttCccggtccccttctcggtgagtgttctgttgttcgagcggcgactgttggcgtgaccccgccgagggccgaggcgatggcggcttctcgtctgctcggctggtggattccat

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CDS seq

atggaatccaccagccgagcagacgagaagccgccatcgcctcggccctcggcggggtcacgccaacagtcgccgctcgaacaacagaacactcaccgagaaggggaccggGaagcagtggggaacgggaggaggaggaggaggaggagagcactcaccgagagcgagaagtgggcccgccgcccgcgccggccgccggaatgtggggaaaggggaggggagcgcggcggcgatcggcagcagctccggccatggctgcgtcgctttcggtcaggcggcggcggcggacgcaagccggcgacacactacatgggccccgggctgtcacgagatttcggcccatcatatactgtcgggtccggtttcttgcaggcgctcgctgtgagggaggctgccgaggagaagaaggcgacggcggccaggtccaaggccaagacggccgccaaggccaagctgagcaaagctccggctgcgaccgcgagcaagacgagcatggagccaagccgctcgcgcctccctctcatccacttctcgctgctcgcgtcgctgtgttccgcgcggtggcgagacgacagccgcggcttcctctggtgccccgcctcgcgcccccctcggcgtggcccgcttgctatcgtagtctacgctcatgacgagacggccatgtcgccggagcaggaggattgggagatcaatggcatagacagatcaggtttggatgctcaggttgctgaggcatacagtgctaatctagtgcaaatcaccacgccgcggacgccccgccccgcgctggtgctcacgccggtcaccgccgacgaggtgcgcgcctacgtcgtctgctgccgcaaccacggcctcactgtccgcgcgcgcagcggcgggcacaactacgagggcctctcgtaccgctcgctccggtcgtccggcgacggcgaggaggcagcacgtttcgccgtcgtcgacaagaaccatggccataaccataacacgcctggcctgttaggtcactaa

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Protein seq

MESTSRADEKPPSPRPSAGSRQQSPLEQQNTHREGDREAVGNGRRRRRRRALTESEKWARRPRRPPECGERGGERGGDRQQLRPWLRRFRSGGGGGRKPATHYMGPGLSRDFGPSYTVGSGFLQALAVREAAEEKKATAARSKAKTAAKAKLSKAPAATASKTSMEPSRSRLPLIHFSLLASLCSARWRDDSRGFLWCPASRPPRRGPLAIVVYAHDETAMSPEQEDWEINGIDRSGLDAQVAEAYSANLVQITTPRTPRPALVLTPVTADEVRAYVVCCRNHGLTVRARSGGHNYEGLSYRSLRSSGDGEEAARFAVVDKNHGHNHNTPGLLGH

Function Berberine bridge enzyme-like Cyn d 4 [UniProtKB/Swiss-Prot:Q5QJ60]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsGoSa_01g0012530 OsGoSa_01g0012530.01 Chr01 10415769 10419422 - NAM
CDS seq

atggaatccaccagccgagcagacgagaagccgccatcgcctcggccctcggcggggtcacgccaacagtcgccgctcgaacaacagaacactcaccgagaaggggaccggGaagcagtggggaacgggaggaggaggaggaggaggagagcactcaccgagagcgagaagtgggcccgccgcccgcgccggccgccggaatgtggggaaaggggaggggagcgcggcggcgatcggcagcagctccggccatggctgcgtcgctttcggtcaggcggcggcggcggacgcaagccggcgacacactacatgggccccgggctgtcacgagatttcggcccatcatatactgtcgggtccggtttcttgcaggcgctcgctgtgagggaggctgccgaggagaagaaggcgacggcggccaggtccaaggccaagacggccgccaaggccaagctgagcaaagctccggctgcgaccgcgagcaagacgagcatggagccaagccgctcgcgcctccctctcatccacttctcgctgctcgcgtcgctgtgttccgcgcggtggcgagacgacagccgcggcttcctctggtgccccgcctcgcgcccccctcggcgtggcccgcttgctatcgtagtctacgctcatgacgagacggccatgtcgccggagcaggaggattgggagatcaatggcatagacagatcaggtttggatgctcaggttgctgaggcatacagtgctaatctagtgcaaatcaccacgccgcggacgccccgccccgcgctggtgctcacgccggtcaccgccgacgaggtgcgcgcctacgtcgtctgctgccgcaaccacggcctcactgtccgcgcgcgcagcggcgggcacaactacgagggcctctcgtaccgctcgctccggtcgtccggcgacggcgaggaggcagcacgtttcgccgtcgtcgacaagaaccatggccataaccataacacgcctggcctgttaggtcactaa

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Protein seq

MESTSRADEKPPSPRPSAGSRQQSPLEQQNTHREGDREAVGNGRRRRRRRALTESEKWARRPRRPPECGERGGERGGDRQQLRPWLRRFRSGGGGGRKPATHYMGPGLSRDFGPSYTVGSGFLQALAVREAAEEKKATAARSKAKTAAKAKLSKAPAATASKTSMEPSRSRLPLIHFSLLASLCSARWRDDSRGFLWCPASRPPRRGPLAIVVYAHDETAMSPEQEDWEINGIDRSGLDAQVAEAYSANLVQITTPRTPRPALVLTPVTADEVRAYVVCCRNHGLTVRARSGGHNYEGLSYRSLRSSGDGEEAARFAVVDKNHGHNHNTPGLLGH

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.000000 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0759700 SBH 2.543346 1.943270 6.001562
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g18230 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os01g0759700 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0012970 RBH 0.0 0.000000 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0012670 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0013000 RBH 0.873030 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0012470 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0012580 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0171600 RBH 0.4719105 0.439985 0.1317075
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0012510 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0169400 RBH 1.264884 0.8144695 0.154956
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0012510 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0012590 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0012670 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0024390 SBH 0.082680 2.672013 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G012650 RBH 0.142188 0.000000 1.445504
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0012460 RBH 1.072654 10.249332 2.390528
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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