Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_01g0012970 | OGI:01031140 | 15/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr01:10489610-10492582 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATCTTGGCGGTGGTGGAGGGCGGGCTGAAGGGAGATAGTGAGAAAGGCGGAGGCCCGTGGAGGAAGGAGAGGAGAGGTGGAGGGCAAGGCAAGGGTTTGGTTGGCGGTGGGCGGCGGGCACAAAACCTTTTAATACTGCAGAAGTTTTTTCCCGAGCGATGCTCTTCAGCTATCACCAGCCAAACGAGCGTTTAGAGGTCCTCCTAAAAAGATAGATCTTTTTTTAGGTAATACTCCTAAGTGTCCGTCAACAAAAATCGGTTTTTCGTGCTGGTTTTTGATCCAGAATCCATCGATATATTTTTGCAAGCGTTTGTTTTATTAGTCTGTCAGTAAAAATAAATGGATGACGCCATGAAAAATGGTTTTTATTGTGAAATAAATGACATTGTTTTTGATGTTTTTTAATTTCTATCCGCGTCGTATTGAAGTTGCTACTAAATAGTAATTCGCAAATATAAAAATAAAAATTGACTGTACCTATAACGTCTTTGTAAAGGTAATAAAAATGATACCGTTTTCTACCGTTTCCATCCCTAGTCAGTTAAAGGAGTGTCGAGCTGCCTGATATATTTTTTTCCCAACAACCTCATCTTACATGAACGATGAGCATTTTTTTTATATAGCAATGATTGAGGAATCTAGACCAGTGGATCGTGACAACTACAGTCAGCGTATACGTGCAGAGATCAAATCAAATGCCCAGCAAATGAAATTTTTTGTGCATTAATCCACTGTTCTATATATATCGAACAATGTCTTAGTATATTGTAGTTGTCCAGTTGCTGTTTCAACACGATCGACGATATATAGAGATTATGATGGTGATGCACTGGGGCGACGACGTACGAAGCAAAGGAAGATCGAACGTGTGCGTATGCCGGCCGATGCGACGTACGCGTACCGACCACATATCTGAATGCATCCTCTTCACACGAGCGGCGACACATGGGTGTGTGTACAGCCACCACTGTTTCTATACTATATCCTTTGATGAAACGGCAAACACTGTTTATATAAATCTCGTATATATACAAAACAACAATAATGACACGATAAAGTCTACTGTAGACATAATCTTCCCTGTATAATTAAACAAATGTATAATCAGCTACTTCCTCCGTTTCAGAATGTAAGTCATTCTAGCATTTTTCACATTCATATTGATGTTAATGAATCTAGACATATATATTTATTTAGATTTATTAACATTAATATGAATATAGGAAATATTAGAATTACTTATATTCTGAAACAGAGAGAGTATATGTATGTATGTGACCCCATTATCTTTGGTTTATTATAAGCTAGTAGTGCTTTGCTAGGCACGCCGTACGTTGGAAAATTGTTTGGAGAGTCAGAAATACACTCATAGTGCCGGCCAAAATACATCCCACTGATAATTAATTTGCTCTGGCTAGGCTGAATCTCGCAGAAAGCGATTTTTCTGTTCGGATTTTGTGGAGGAGAATGCTGCGTGGACATAAACGATTGGGCCACCGGTGTACCGGAGAAAATTTCAGACTATCTGCTTTAGTTTATAATTATTCAGACTTTTCTTTTTGAAATTTCTTTTTAGTGACCTAACAGGCCAGGCGTGTTATGGTTATGGCCATGGTTCTTCTGAAGTAGTGATGGAAGCTAGAAATGGGCCACATACCTATTTGGTCGGCAAAAAACAAATATGCATTTCGTATCTTGTTTGGTACCTTTCCATCACAGTTTTATCATCCTCTAAGTAAATAACATCAAGATTAAAGACATCAAAATATTGCTCATGTCCCGTGGATTGCTAATGTTTTAAATATTTCATGTCATTGCACAAATAAAAATTAATCTTAATTAGTTGTATACAACACATTCAATAATGCACAGTGGTGGACCTAGGGGTGGTGCTAGATATGCACTGGCATACCTAAAATAACTTGAAAAATGTTAGTAACTAGAAAAAAAAATGCCTGTACATCGTAACGGGTGAAGGCTATTTTAATTTTATGGAAAAAGTACAACGAAGGTCCCTCAACTTGTCATCGAGTTATAAAATCGTCCTCAAACCGCAAAACCGGATACAACGCACCCCTCAACTTAGAAAACCAGTACAAAGTAGGTCCCTCGGCGGTTTTGACTCCGGTTTTGTCTGATATGACAGCTGACTCAGCATGGGTCCAACGTGTCAGCCTCTTCTTCCCCCTCTCCACCTCTCTTCCTCTCTCTTCTTTTCTCTCACTGCAGCACAGCCACCGGGTGGGGAGGAGATCGGTGGGGGAGGCGGGAGTCCGGCGGCGACGACGCTGCGGACGGCGCGCGTGGCCCTCGCCTTGGTGCATGCCACTCCCCTCGCCGCGTCCAGCCGCACCACCCAGAGCGCGGCGACGTCGACGACGGCGAAACGTGCTGCCTCCTCGCCGTCGCCGGACGACCGGAGCGAGCGGTACGAGAGGCCCTCGTAGTTGTGCCCGCCGCTGCGCGCGCGGACAGTGAGGCCGTGGTTGCGGCAGCAGACGACGTAGGCGCGCACCTCGTCGGCGGTGACCGGCGTGAGCACCAGCGCGGGGCGGGGCGTCCGCGGCGTGGCGATTTGCACTAGATTAGCACTGTATGCTGAACATAGCACAAGCCAACAAATACAGCAGGCTAGGAGCTTACCCTCAGCAACCTGAGCATCCAAACCTGATCTGTCTATGCCATTGATCTCCCAATCCTGCAACCAGACCATAACAACATCAATTCAGGAAAGTTGGAAACTCCAAGCAGCATCACTAAACATATACGTAGCTAGCTCTACCTCCTGCTCCGGCGACATGGCCGTCTCGTCATGAGCGTAGACTACGATAGCAAGCGGGCCACGCCGAGGGGGGCGCGAGGCGGGGCACCAGAGGAAGCCGCGGCTGTCGTCTCGCCACCGCGCGGAACACAGCGACGCGAGCAGCGAGAAGTGGATGAGAGGGAGGCGCGAGCGGCTTGGCTCCAT
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| CDS seq | ATGGAGCCAAGCCGCTCGCGCCTCCCTCTCATCCACTTCTCGCTGCTCGCGTCGCTGTGTTCCGCGCGGTGGCGAGACGACAGCCGCGGCTTCCTCTGGTGCCCCGCCTCGCGCCCCCCTCGGCGTGGCCCGCTTGCTATCGTAGTCTACGCTCATGACGAGACGGCCATGTCGCCGGAGCAGGAGGATTGGGAGATCAATGGCATAGACAGATCAGCATACAGTGCTAATCTAGTGCAAATCGCCACGCCGCGGACGCCCCGCCCCGCGCTGGTGCTCACGCCGGTCACCGCCGACGAGGTGCGCGCCTACGTCGTCTGCTGCCGCAACCACGGCCTCACTGTCCGCGCGCGCAGCGGCGGGCACAACTACGAGGGCCTCTCGTACCGCTCGCTCCGGTCGTCCGGCGACGGCGAGGAGGCAGCACTATTAAAAGGTTTTGTGCCCGCCGCCCACCGCCAACCAAACCCTTGCCTTGCCCTCCACCTCTCCTCTCCTTCCTCCACGGGCCTCCGCCTTTCTCACTATCTCCCTTCAGCCCGCCCTCCACCACCGCCAAGATGA
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| Protein seq | MEPSRSRLPLIHFSLLASLCSARWRDDSRGFLWCPASRPPRRGPLAIVVYAHDETAMSPEQEDWEINGIDRSAYSANLVQIATPRTPRPALVLTPVTADEVRAYVVCCRNHGLTVRARSGGHNYEGLSYRSLRSSGDGEEAALLKGFVPAAHRQPNPCLALHLSSPSSTGLRLSHYLPSARPPPPPR |
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| Function | Berberine bridge enzyme-like Cyn d 4 [UniProtKB/Swiss-Prot:Q5QJ60] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_01g0012970 | OsAzu_01g0012970.01 | Chr01 | 10489610 | 10492582 | - | NAM | ||
| CDS seq | ATGGAGCCAAGCCGCTCGCGCCTCCCTCTCATCCACTTCTCGCTGCTCGCGTCGCTGTGTTCCGCGCGGTGGCGAGACGACAGCCGCGGCTTCCTCTGGTGCCCCGCCTCGCGCCCCCCTCGGCGTGGCCCGCTTGCTATCGTAGTCTACGCTCATGACGAGACGGCCATGTCGCCGGAGCAGGAGGATTGGGAGATCAATGGCATAGACAGATCAGCATACAGTGCTAATCTAGTGCAAATCGCCACGCCGCGGACGCCCCGCCCCGCGCTGGTGCTCACGCCGGTCACCGCCGACGAGGTGCGCGCCTACGTCGTCTGCTGCCGCAACCACGGCCTCACTGTCCGCGCGCGCAGCGGCGGGCACAACTACGAGGGCCTCTCGTACCGCTCGCTCCGGTCGTCCGGCGACGGCGAGGAGGCAGCACTATTAAAAGGTTTTGTGCCCGCCGCCCACCGCCAACCAAACCCTTGCCTTGCCCTCCACCTCTCCTCTCCTTCCTCCACGGGCCTCCGCCTTTCTCACTATCTCCCTTCAGCCCGCCCTCCACCACCGCCAAGATGA
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| Protein seq | MEPSRSRLPLIHFSLLASLCSARWRDDSRGFLWCPASRPPRRGPLAIVVYAHDETAMSPEQEDWEINGIDRSAYSANLVQIATPRTPRPALVLTPVTADEVRAYVVCCRNHGLTVRARSGGHNYEGLSYRSLRSSGDGEEAALLKGFVPAAHRQPNPCLALHLSSPSSTGLRLSHYLPSARPPPPPR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0759700 | SBH | 2.543346 | 1.943270 | 6.001562 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g18230 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0759700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0012670 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013000 | RBH | 0.873030 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0012470 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0012580 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0171600 | RBH | 0.4719105 | 0.439985 | 0.1317075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0012510 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0169400 | RBH | 1.264884 | 0.8144695 | 0.154956 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012510 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0012590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0012530 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0012670 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0024390 | SBH | 0.082680 | 2.672013 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G012650 | RBH | 0.142188 | 0.000000 | 1.445504 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012460 | RBH | 1.072654 | 10.249332 | 2.390528 |
