Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_10G003320 | OGI:10013200 | 1/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr10:4294540-4302028 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTGCACTCTATCTCCAATCCTCCACTTCCTTTTCGCACCGGCATCGCGCCGCCGTCTGTGCGATAGCCGCATCTCACCGCCGCCCGGCGATCCCGTCGGCCGCCGCCCTTCCCCTCACGCTCACGGTGGCCGTCTCCTAGCCTCCCCCGCCATCCCTCTCCGCAGCTCTCTGGGCGGAGTTGGAGTAGTAGGTCGTCGTCGCGTTGAGGCGCGGGATACACCGCCTTCTCCCTCCGTCCTTGTCCACCACCGTCAGTGTGTGTAGGCGGCGGCGCAGGGCAGTGCCGGGCCGGCTGGAACGCCACCTCGCCGATGGGGCTGTGTCGTCGGGTACTCCACCAACGCCCTTCTGTCATCCATCGAATTAATTCCTTCTCTTAGAAATTAATTTACTTATTACTTTCTTGTTGATAGATTTCCTAGGATGGGACGTTTGCAATTTTGGTGTTTCCCATGGCACTTGTCTTCCACTGGCAACGTTGTCAAAAGTTGAGAAACTTCCATCACAAGCCAGGTGCGTGCTATTACTGAATTTTAGTGGTAGCAACAGGATCCGTTCAGTTGTTCATCTAGAGAAACAGCTTCTTTTGACGGGAACTCTATTATAAATAGAAATATCAATGCTATCAGATGCTGAAGCTGCAAAATCTATAGAAAAATATACTTGTTTTCAAATAAATTAAGTCCCCCTGAAACTTCTGTTATGTGCAGCACGGCACATGATTAATTATAGTCGTCATAGCCTCAGTCTTGGCATAGTTATAAGGTAGTAATTGGCACGGCTTTAATCTGGCAAATGTGAGGAATAGAAGAAGCGATAACCATGATGTAGCTCTATAGTTTTACCAGAGCCAACGATATTCAAGGTTTGTTTTGTTTCGCAATGTCATCAACTGTCTCTTTTGGTTGTCTTTGTTTTCGTCCAATGGGAGCAATTTTCTTGCATATGGAAGCTGTGGCCATTCCCATCCAATGTGGTTCCTGAATGGCTGATATATTATGTATACAAGGTTGGATCAATACATGCATCCAAATGAGTCTCCCCTTTGGGACTTCAATAAGTTATTTTGCAAGTGGATTTCTAAGTTACCCTGTAACCTGAGATGTCCTTGAAAATCCTAGAAAATTGGCTAGGTTTTTATATGATTCTTTTATCTGATGTAATATCACTCACCTGGCATCTACTACATCCCTAACAAGTTTTCTCACCTGGCATCTACTACATATGCACATTATTTTTTTTATTGTTTTTAAACTAAGCATCTGGAAGTTATATATGGTCAATTTCCAAAAGTTTGGCCATATTTTGTTTGAACTGTCAAATATATATTGACTTGGGGGGGGACTTTGGGCAGTATGAGAGATTATTGAACAATTGTTGAGCACACTACAGGAACATGTAGTTCCGTTACCTAAATTTTTAGTAATACTTTCTCAAATATTGTAAAATTTCTCATTATGTAACCTTGCCAAGCAGCAGAATTGAATTAAAAAGGAATAGGCCAATTTGAGCCAAGATAGACCGATTGGAGTCATTTATCTTTAACAGAAATAAATATATAAAGAACAATTGTACTGCAAAAGTGAAAAATGCTCCTTATGTATAGTTGCTGGAATGAATGGTGATGTATGATGGTAGGTGATTTTAATTTCAGGGTTAGGTTCACTATTGTTTTAACTGCAGAAGCCAGAATCCCAGATTAGTTAGGGTGTCGTAGATTGTTGTGTTTCTTCTAAGAAACCTTAAACAATCATTTTGCGAGTTTTCTCCCTAAAAAGGAATTCTTATAAGGAAATAATATACTACTGTTACAAATTAATGTAGCATTATATACTATCTACGTTGTCGCAGTTCCAATACTCTGAGCTTTATTAGTTCCACTAAACATTAAAGACATTTAAGTTCATGATATTCCTGGCCAAAGATTAGCAAATAGGTTTCAAATAGATTTTGTTTTTACTTTAGGACATTGGCGTACGTTGCTGGCTTAGAGATATTTATTGAAATGTTTAGTTTGGATTCCCGTTGCAACGCACGGGCACCTAACTAGTTACTAATTCATTGCAGCGAAAAATAATCCTACTTAAAAACCACCCAGAGGCGACAACAAAACAAGACGTATAGTTAGTTATTCCCGTTGCGTCGTAGTGGTGCCCCAATTCGAGGTTTGCTTCCAATCCTTCTTGCATCTCCCCTCTTCGATTGCTGAAGTTTTCACATCTCTCTACGATCTCAAATCTTGCTTACGGTCATGGCTTCGCATCTTTCCTCTCCATTTCTCCTAACAATTTCTGCTCAAATCTTGCACTACGATCTCAAATCATGCTTACAGCGGATTCATGGCTTCTTGAATCTTGACTCTTGGTTTTCCCATTCTGCAGCTTTCGCACGCACACCACCTATTCGACGAAAGGCCTCTGCGTGCTCGGCCACCATCACCGTAGCCCCAGCTAATGTCCATGGCAATGTCAAGCTCAACGACCTCCCCAGCCATATCATCCTCCACATCATGTCCTTCATGAGCATTTGCCAGGCTGGGCATGCATGCGTGCTGTGCTGTCAAATCTCCGGCGTTCCGTGCCCTGCATGAACATCGACTTCGATTATCTGGCAAGAAAGGTATGTTTATTGATCTTACATATTCCCCCTTGTCTTAGTGTATGCAGGACCTTAATTCATACATCTTCATATTCCCCCCCTTGACACTCCACGATTTACATAAGATTAGTTACCTGTACACACAAAACTATTTGTTTCATAACTAGTTCTTATGCCATGAAACCATGATGTGCAAATAGGATAACTAGTGCTACCAACCACTTGGTGCAATCTAGTTCATGCGCTCCTTTCATTTGTACAAAAAACAATCTGTTGGTTAGTTGACCTGAAGTATCTTAGTTTGGTACGCAGTTCGATCTCACAGAAACTGGAGCATTCCCAATTTGATGACACTATATTTTCTAGTGTATATGCGATTTTGGGTTTGGCAGCTGAAAATGTATCTCAGTGACCATTTTACTTTAGTTCAGATCATTATACATACTCTTATCTTTGTTTTTGAAAGAGGGTTTTGGTGGTGATGGTAGGCTCAACCATTCCCTCACAAGATCTTTGTGGGTGTAAATATATAAGCGTTAGTGTTGTTTTTAAGATCAGGAAAAGTTTTCTATAATATGGCATGAGATTTTTGTAGCCCTCCTGATAATTTATACCTGGTGCAGATAAAAATCGAAGACAATATGCAATGTTGTCCGGAATTCATCAATCTTGTAACCTGTCACTAGGTTGATGATGTCTGGACTCTTAAGTTGTATGCATTAACCGTCTTCCTGCAGAACTTTCCAAAACTGGAGAAGCTGACTCTAGAAATAAAAAAAGGTACAAATTTTTACCACATGTATACTGAAATCTTAATTGCATGGAAGTTTTTGAGTGTGTATTTTATCAGTACAAAACTTACTTTCTCTGCTATAGGAGTATACCCAAAAATATCAAAGGCGAGCTTAAAGAAAGATCATTTACCTGTGAGAACCTTAAGATTGTCGAGGTCACATTCTTGGAGGAAGATCCCCTGGTCAACCGCCTGGAAAATTTCTTTTTCAATAGTGGCATTAACTCTCTTCAGATTAATATCACACTCTGGAACTACAACTGACCTTACAAATCTGAGGTTTTCAGAGAAGATCACAAGCATCCAAGGATCAGACGTTAACATGCATTGTCATCATTCAATCACTCTGTGGGGGTGACTTAGATAAATTTCATCTAACCAAATTTGGAGGCAATGAGGCACATGGATATGTTTACTGCCCTTGTTATTAGTTCTATGGCTAGGGAAATTTCATCTAACTGTCTGCGCTGCTGATCGATGCTTGTGCTGACAATCTGACTTGGTGGATTGATTGCTTATTTGGAAAATTTTGCACTGTCACAGAGTGGATCACATTTTTGGAAAATTTCGCTGCAAAGAGCTTGATCGCAAATCGTCGCCACTTGTGTTGATGCTCCAAGCACCAAGTAAAACAGTTTGTTAAATGTTCAATGGTCATGCATTTACAGGCACGATAACTGGGGAAGCCATCGACTGGGCTATATGCCCTATGAAACAATTGAAGGCTTTGCTCAGGGAGTTGTTCACCTGCACTGCACAAGCAATATGGGCTGCGCATTATTCATTGTGATTTGAAACCGGGCAATATTCTCTTTGGTTCTGATATGACTCCTAAGATTTCTGATTTTGGTTTCTGATTTCTCATTGGCCGTAGAAGCTCGATCAACTACATTAAAGAATACTCCTGCCATCAAAACTACAACCGCACTTTCGACCTCTGGGTTTGGACCCCTGATCTGAGCTCCATCCCAAAGGCAATGTGGTTCACCATCACCCGACCTGGTGTGGAGGGCTGTGCGGTGCAACCAACATCCCCTTCCCCGACCTCGAGCCGGAGCAGCCAGCACCAACAGAACCGAAGGGAGGGCTCACGTACCCCATCATCATCATCCATGTTGACATGGTAGAAGATATGATCTCCCACCAAAGCCGTGGCTTCAAATGGCACTACAGCTATCCAGATGACATGACAAGAGGAAGGATGCAGGCACGGCCTCTGCAGCCTTGGAGAGCCCTGCCTGAGCCAGGGAGAAGATCGGATGATGAAGACGACCATGAACAAAGATCAAGAAGGCACATGAGCAGATCCCTGTGGGACCGCCTTAGTGGCCGTGTTGCAAGCCGAAGCAGAGAGCTGGACTGCGACGACTGTATCCGCTACATTGCTACAACCAGGAGAACAGAGGGCGCCAAAGGGCCCGCGAGACAGGTGGTGGAGACAGGTGACAGCAGGAGCAGAAGCCACCACCTGTCTCGCTCAGTCGAACCTGGTGAGACCAGGATACGCCGCCATTCAGTGGTGGAGCAGCACCGCTCCATCCTCCCCCAGTCGCCGGCAAATCAAAACAACGCCCAGGACTCCCGTGCACTGCTCGACCTCCTGGAGAAGCACCTGGACCCAATGCACCATGAGGCGTCGTCCATTGGCAGATCGACGTACTCCCCTGACACCTCTCTGCCACCACCAGCTTCCCCTATGTTTGTACTTTCCTTCGTTGCAGGGCAAGATGAGCAGGCTGCGCTGCCGGGATGGACACAGCAAGTGGTGGGCGCCTTCCTTGCAGAGATCACCACCCCACCCCCGTCCAGCAGCCGCTCCTCCCAGCACTGGGGGCTAAACAGCGCCACCCCTGCCGCAACAAGGTGACTATTTCCACCCATCGCCAAAGTGCTCAGCTGGCAACCAAAGCCAAACGCAGCTCAAACTTAGAAACTATAGCCCAGGAGATTATGGCAAACATGTTTGGTGTGTTTGATGATAATAAGCGCCTTGATGAACATATAAAATAGGAAAAGTCCAAATACCCACCAAACTTTGGATGGGAGTTCGTCTAACACCCTAAACTTTTAAACTGGATATTCAACCCCCTAAACTTTACAACAGCGTTTATATAACCCACGAAGATGGTTTTTCATAGTGGTTTTTATCTAATTTGTATATAAGTTGGATGAGTTTGATCACATGACATACATATTGGACATATATATTAAAATCTTCACCTAAATCTTTTTTAGTTTTCATTTTCTTGATGTATTTTCTAGATTTTACTGCATGAGTCTGATCGTACCATGGAGCTGCATGGTTAACACTTAATACACATATTTTATGGACATGTTAGTATTTGGTAGCAGAAGCATTTGAAGTGTTCTGTGTGATGATGCTCTGAATGCCAAGTATGCTATGTGTTGTTTCTGAGTATTGAAATAGCTCAGCTTAACTTTCTTTATTTGTAGGTATTGGTAACATGATCCAGGTCCAGAGCATTCTTATTTGAGGTATGCATATGGATCTGTCTGTGAATTATCTCCTTGTTTCCCCCCTTCTGCTACAGAAATGCTACATAAATGTTAGTTAGGTGTAGATCGAAATACTAGCCTGATTATTGGAGATTGGACACTCAGTTTGAGGAATTGGCAGATAGAAATAATTGCTATAGTTAGCCTAATTTGAGGTATACATGGTTCTCTCCATGAATGTTCTTCCTTTTTACTTATTTTATTATTATTTTTTATCTCTATAGGGTGCAAGTTTGTAATGGGTGCTCTGAATGTCAGTTTTTCTATGTGATATCATCATTGTTAATATCAGACCTCAATTTATCTTTTTGCATTTTAAATTGTAAATTCTGTCATGGTTTCTGTCATGGCTATTAGAGTATAAGTTATGCAAATTTTGGCGTTTTGTGTTGTGCTAGCAGATTGGGACATGCTGATAGGTCAGTGTTTTTAAAGTGGCATGAAGGTCATTTTTGGTCTAGCAATTGCTATGTCACATGTTCACATGTTAAGTCTTTGGTAGCAGGATCCATTTTAAATGTTCTATATGATGTTCTGAATGTGAAATACTCCCGCTGTCCAAGGTAGTTATATTTTGGGAAGAAGGGAGTCTTATCTCATGTCCTGTTTTTGAATTTCAAGGATGCATTTGAAATGTGCTATGTTAGTACATGATCTTCAGTTTGTGGCACTAGATGTTTGTATTCTGACACTTATTATAATGTGTTCCTTCAGTTTAAGACTACCGACAATCATTCCATGAATTAATCGTCTTGGGGCATCAACCTAGGAAACAGCGAGGCACCAAAGAGCATTATCATTAGCAAAATCCTGTAGCACAACAGGACACTTGGTTGTGCACCATTGAAGGCAGTCATTCAGTGCTTTGAAACTGTCCAGGCAACCAAGATGATTAGGGAGCTGAGTCCTTTCAGCAGCTCCATAGAGATGCTTTTATGTTCCATGCACTACCAACTAGTGACCGGCTGGGCTGCCGTATCCTCTGGTGCAATGGCACTCAAGCGTAACCTTTGAAGGAACACAGTTCAGATTTGCCGCACGAAGAGACATGAAACAAGTAAATGCTGAATTGACTCTTCACTTGATCACACGGGGGACATGCATCCGGATGTGGAAGCCCACGCTTGGCAAGGCGGTCTGCTGTCCAGCCACTGTTGTCAGCAAGCCAAATAAAAATTTTACAGCACAAAGGAGTCCAAGTTTTCCAAATTCTTTTCCATGGTGCAAATCGGACAGAGCCAAAGAAAAACAGGTTATATGCTGGCTTTGCTTGAATAAGCACATGATCAAGCAAACCTGATTCGCTTCTTCAGAGTTCTGCTGCTTCACAGTGAACATCGGGAGTAAGCAACACTTTCATTTTGAGTTTATGCTTCATAAGCTGCATTGCTCTGGTTGATTCTCACCTAACTAGGGCAGCGTAGTTCTCACCTGATAATTTCTGAACCAATCTTCCTTAGTCAGCTGAGATTTTATGTTTAGATTTAGTTTTATGTTTTCAATTTGTCGCATTGTGGTTTCAATCATTCAGTATAATAGATCTCCATAATGAAATTAATTTCATCAGTTTTTGAAGATA
More
|
||||||||||
| CDS seq | ATGGGGCTGTGTCGTCGGGATGGGACGTTTGCAATTTTGGTGTTTCCCATGGCACTTGTCTTCCACTGGCAACGTTGTCAAAAGTTGAGAAACTTCCATCACAAGCCAGCTTTCGCACGCACACCACCTATTCGACGAAAGGCCTCTGCGTGCTCGGCCACCATCACCGTAGCCCCAGCTAATGTCCATGGCAATGTCAAGCTCAACGACCTCCCCAGCCATATCATCCTCCACATCATGCTGGGCATGCATGCGTGCTGTGCTGTCAAATCTCCGGCGTTCCGTGCCCTGCATGAACATCGACTTCGATTATCTGGCAAGAAAGAACTTTCCAAAACTGGAGAAGCTGACTCTAGAAATAAAAAAAGGAGTATACCCAAAAATATCAAAGGCGAGCTTAAAGAAAGATCATTTACCTGTGAGAACCTTAAGATTGTCGAGGTCACATTCTTGGAGGAAGATCCCCTGGTCAACCGCCTGGAAAATTTCTTTTTCAATAGTGGCATTAACTCTCTTCAGATTAATATCACACTCTGGAACTACAACTGA
More
|
||||||||||
| Protein seq | MGLCRRDGTFAILVFPMALVFHWQRCQKLRNFHHKPAFARTPPIRRKASACSATITVAPANVHGNVKLNDLPSHIILHIMLGMHACCAVKSPAFRALHEHRLRLSGKKELSKTGEADSRNKKRSIPKNIKGELKERSFTCENLKIVEVTFLEEDPLVNRLENFFFNSGINSLQINITLWNYN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_10G003320 | OsN22_10G003320_01 | Chr10 | 4294806 | 4298414 | + | NAM | ||
| CDS seq | ATGGGGCTGTGTCGTCGGGATGGGACGTTTGCAATTTTGGTGTTTCCCATGGCACTTGTCTTCCACTGGCAACGTTGTCAAAAGTTGAGAAACTTCCATCACAAGCCAGCTTTCGCACGCACACCACCTATTCGACGAAAGGCCTCTGCGTGCTCGGCCACCATCACCGTAGCCCCAGCTAATGTCCATGGCAATGTCAAGCTCAACGACCTCCCCAGCCATATCATCCTCCACATCATGCTGGGCATGCATGCGTGCTGTGCTGTCAAATCTCCGGCGTTCCGTGCCCTGCATGAACATCGACTTCGATTATCTGGCAAGAAAGAACTTTCCAAAACTGGAGAAGCTGACTCTAGAAATAAAAAAAGGAGTATACCCAAAAATATCAAAGGCGAGCTTAAAGAAAGATCATTTACCTGTGAGAACCTTAAGATTGTCGAGGTCACATTCTTGGAGGAAGATCCCCTGGTCAACCGCCTGGAAAATTTCTTTTTCAATAGTGGCATTAACTCTCTTCAGATTAATATCACACTCTGGAACTACAACTGA
More
|
|||||||
| Protein seq | MGLCRRDGTFAILVFPMALVFHWQRCQKLRNFHHKPAFARTPPIRRKASACSATITVAPANVHGNVKLNDLPSHIILHIMLGMHACCAVKSPAFRALHEHRLRLSGKKELSKTGEADSRNKKRSIPKNIKGELKERSFTCENLKIVEVTFLEEDPLVNRLENFFFNSGINSLQINITLWNYN |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_10G003320 | OsN22_10G003320_02 | Chr10 | 4294540 | 4302028 | + | IsoSeq | ||
| CDS seq | TGCACTCTATCTCCAATCCTCCACTTCCTTTTCGCACCGGCATCGCGCCGCCGTCTGTGCGATAGCCGCATCTCACCGCCGCCCGGCGATCCCGTCGGCCGCCGCCCTTCCCCTCACGCTCACGGTGGCCGTCTCCTAGCCTCCCCCGCCATCCCTCTCCGCAGCTCTCTGGGCGGAGTTGGAGTAGTAGGTCGTCGTCGCGTTGAGGCGCGGGATACACCGCCTTCTCCCTCCGTCCTTGTCCACCACCGTCAGTGT
More
|
|||||||
| Protein seq | CTLSPILHFLFAPASRRRLCDSRISPPPGDPVGRRPSPHAHGGRLLASPAIPLRSSLGGVGVVGRRRVEARDTPPSPSVLVHHRQC |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr10 | 4294870 | 4294964 | + | OsN22_10G003320_02 | OsN22_10G003320_02,OsN22_10G003320_01 | All |
| A3 | Chr10 | 4297160 | 4297877 | + | OsN22_10G003320_02 | OsN22_10G003320_02,OsN22_10G003320_01 | All |
| RI | Chr10 | 4296923 | 4297160 | + | OsN22_10G003320_02 | OsN22_10G003320_02,OsN22_10G003320_01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.901394 | 1.763052 | 2.969149 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0127000 | SBH | 0.837057 | 0.604194 | 1.839073 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0127000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001240 | SBH | 0.059386 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001240 | SBH | 0.0 | 0.0 | 0.139198 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001210 | SBH | 0.0 | 0.000000 | 0.389954 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001150 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003530 | SBH | 2.942142 | 8.098986 | 4.598973 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003670 | SBH | 0.019392 | 0.0 | 0.746464 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003490 | SBH | 0.000000 | 0.057889 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001260 | SBH | 0.134524 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003670 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001220 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003740 | SBH | 0.062828 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003620 | RBH | 0.000000 | 1.136633 | 1.490405 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001100 | SBH | 0.0 | 0.0 | 0.0 |
